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Properties
| Property Name | Value |
|---|
| Product | high mobility group protein tdp-1 |
| Orig transcript id | gnl|cribi|Naga_100078g24.7001.mrna |
| Orig protein id | gnl|cribi|Naga_100078g24.7001 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:341554..343756 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4345 ID=rna4345|Name=rna4345|organism=Nannochloropsis gaditana|type=mRNA|length=513bp
ATGCCCCTCGATTTGATCTCGCCATTGGAAAGAGGGCAGTCTGACCATCA
GCCATCTTCTTCAAGCTCTTCATCATCGTCCTCAGGGACGTCATCGTCGG
GCGACAGCGGCAGTGGCAAATCTAGTAGCTCGAGTGGGGTTTCGTCTTCG
TACGGGTCGTCTTTCTACGATGGGACAGAGTCAGAACCTACGACGAAAGG
AAGCTGGGATTCTGACATCTCTACGTATCCTACGACGCCGTTTCATAAAT
CTTTTTGTTGCAAATGCCTGGGCTGGACGCTGGCTATTCTGCTCGTGCCA
AGCATAGTAGTTGGGATTCTTGTATACAAACGTGTGCTTTGGTTTACAAT
GCCAACAATAACCTATGAAAAAGGCTCTTCTCTGCGCATCTCGACGTTAG
ATGGTCCACACTCGGCAACAGATTACAACGTGGCCATAAATGTGAAGGTG
AATAATCCCAACAACTTTCCTCTCCGATTTAGCGATGTAGCTATGCAGTT
GACCGGTAGGTAG back to topprotein sequence of rna4345 >rna4345-protein ID=rna4345-protein|Name=rna4345|organism=Nannochloropsis gaditana|type=polypeptide|length=266bp
MAKRASSAATELVQPKGPCNAYMWFSNDPKTKERVKETLPKEHTNKDILS
KCGEMWRTMNDQDKEPYAAQAEKDKARFEKEMDAFIKAGGSKKARKGGSG
GSKGKTAKPSLPSRTTISDTKKQEKKEGKGEEAREKKGNGGQGATKPKAL
DFAFEHFMEAELKAEKPELKGKSEKEKQIFLKKKWDEMDESQKKGWTSAA
PGSENKDALVAKGAKGVPMPASPATTAQPEGSEEEVEKERGKEDGEDEIE
MEEEAGEGAGNETEDA back to topmRNA from alignment at CM002463.1:341554..343756+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4345 ID=rna4345|Name=rna4345|organism=Nannochloropsis gaditana|type=mRNA|length=2203bp|location=Sequence derived from alignment at CM002463.1:341554..343756+ (Nannochloropsis gaditana)
CGTGCTCGGGTTCAACATGGGCTAACAGCACATAACTTACTTTTCTGCTT
GCTGATTCATCACTCATTATTGCTTTATCGTCCACGAGAGGGAATGGCGA
CATTGTTACGTGTCCTGATACTTGAAGCCTTTACTGTTCCATTCTCACCA
GATAGCCGATAGCACAGTTATTGTCCATAGTTGATCTTCCTGCATGACTT
TTAAAGACCTGGCAATTTTTGAGCTTGTAGAGGTTTAATTGCAACCTAGT
CATCCGTGCGTGGAGGAAAACTTGTCCTTTGAACACCGTCCCCCCGTAGT
CTGAATTTCCctaccttccttcctccaccttcgaAGCTTCAGACACTTTC
ACAACGTTTGTCACCTGAAAACAAGCTATCCTCCATGGCTAAGCGGGCTT
CATCTGCTGCTACCGAACTGGTACAGCCCAAGGGACCGTGCAATGCGTAC
ATGTGGTTCAGTAATGATCCGAAGACGAAGGAACGGGTGAAAGAAACGCT
TCCCAAAGAACACACGGTAAGCGGAAAAGAAGCCTCGAAGTACTGTTCTC
ATTTGATTTGAACAATTAGATGCATTCATAACATAGACACGGAATGCGAG
GTTCTCGTGCTTTCAAAGAGAGATATAACGAGAAGAGAGGTTCACAGATT
TCATTTCAACCCTTTCATATACTTTGCACCTCCACAGAACAAAGACATTC
TATCCAAATGCGGGGAGATGTGGCGGACCATGAATGATCAGGACAAGGAA
GTACGTGGGATTTATGATCTCCCCTGTCATGCTCTCTGCTCGCTATGATC
CATCTCTGTGATCTTATTCTGAATGAGCTTTCCTGTAACGAGTAGATCCC
AGCCTGTGATGCCTTTTATTTTTTCCATAAAGCCATATGCAGCACAGGCT
GAGAAGGACAAAGCTCGCTTCGAAAAAGAAATGGATGCCTTTATCAAGGC
CGGCGGCTCGAAAAAAGCGCGGAAGGGTGGCAGCGGAGGCAGCAAGGGCA
AGACTGctaagccctccctcccttcccgcaccACCATTTCTGATACTAAG
AAAcaagagaaaaaggaagggaaaggggaggaggccagggagaaaaaggg
aaacggaggcCAAGGAGCGACGAAACCGAAGGCGCTTGATTTCGCATTTG
AACATTTTATGGAGGCTGAGTTGAAGGCGGAAAAGCCCGAACTGAAGGGT
AAAAgtgagaaagaaaaacaaatctttttgaaaaagaaatggGACGAAAT
GGACGAGAGTCAAAAAAAGGGTAAGGCGGAGGGGCAATTGCGTAGATGAC
AGTGACGATCATTTCCTATGTATTAGCGTACCAATGTCGCCTGACGGTGA
CTTCGACGACACGTCGCCACCTTGATTCTTTCACGTTCATCCTCATCCAC
ACCTCATGTGCCTTATACCAAAATCTGTGCTTTAATTTAAAGGTTGGACG
TCCGCGGCCCCTGGAAGTGAGAACAAGGACGCCCTCGTTGCCAAAGGCGC
GAAAGGCGTTCCCATGCCAGCGTCGCCCGCGACCACGGCGCAGCCAGAAG
GGTccgaagaagaggtggagaaggaaagaggaaaggaggacggcgaggat
gAGAtagagatggaagaggaagcaggagagggggcggggaatgAGACCGA
AGACGCCTGAAGACGCGCAACACAGCGCTGTATAAGTGATATATGCGCTC
TGAAGATATGTGTATGTTTCAGAAGTGAGCTCAAAAAGCGAAAAAATCGA
ATAAAAAGACGCTTGGCACGGACCGGCTATGACGAGAGCATGAATGTCAC
GGGGTAGGCGAAATCAACCTTCGGGTGTCGAAGCCGATGTCTTTCGAGCA
TATTTTCAAATTGCGCCGTTTAAAACAAGAAGCAGCTGTGAAGCTTACAA
CGAGTGGGCTCGAGGAAGAATGGATATAACGAGGACAATACACCGACACG
TAAGAAGCCAAGAATGACTACCTTACTAGTACAATACCGAACTAAAgatg
aaaaaaagggggaataAAACCTTGTTTTACGCCAAAGACATCCATGTGCT
GCTCCTCTTAAGTTAAAGACAAAGACATCCATGTGCTGCTCCTCTTAAGT
TCCCTTTTCAGGCAAAGGGAATTTTTCAGCATGCAGCATACGCTAGTGAG
TCGAGATACTTTGTTCCCAGAGACATCTAGTATGTGAGGAGAACAGGGGC
TGC back to topCoding sequence (CDS) from alignment at CM002463.1:341554..343756+ >rna4345 ID=rna4345|Name=rna4345|organism=Nannochloropsis gaditana|type=CDS|length=3204bp|location=Sequence derived from alignment at CM002463.1:341554..343756+ (Nannochloropsis gaditana)
ATGGCTAAGCGGGCTTCATCTGCTGCTACCGAACTGGTACAGCCCAAGGG
ACCGTGCAATGCGTACATGTGGTTCAGTAATGATCCGAAGACGAAGGAAC
GGGTGAAAGAAACGCTTCCCAAAGAACACACGAACAAAGACATTCTATCC
AAATGCGGGGAGATGTGGCGGACCATGAATGATCAGGACAAGGAACCATA
TGCAGCACAGGCTGAGAAGGACAAAGCTCGCTTCGAAAAAGAAATGGATG
CCTTTATCAAGGCCGGCGGCTCGAAAAAAGCGCGGAAGGGTGGCAGCGGA
GGCAGCAAGGGCAAGACTGctaagccctccctcccttcccgcaccACCAT
TTCTGATACTAAGAAAcaagagaaaaaggaagggaaaggggaggaggcca
gggagaaaaagggaaacggaggcCAAGGAGCGACGAAACCGAAGGCGCTT
GATTTCGCATTTGAACATTTTATGGAGGCTGAGTTGAAGGCGGAAAAGCC
CGAACTGAAGGGTAAAAgtgagaaagaaaaacaaatctttttgaaaaaga
aatggGACGAAATGGACGAGAGTCAAAAAAAGGGTTGGACGTCCGCGGCC
CCTGGAAGTGAGAACAAGGACGCCCTCGTTGCCAAAGGCGCGAAAGGCGT
TCCCATGCCAGCGTCGCCCGCGACCACGGCGCAGCCAGAAGGGTccgaag
aagaggtggagaaggaaagaggaaaggaggacggcgaggatgAGAtagag
atggaagaggaagcaggagagggggcggggaatgAGACCGAAGACGCCTG
AATGGCTAAGCGGGCTTCATCTGCTGCTACCGAACTGGTACAGCCCAAGG
GACCGTGCAATGCGTACATGTGGTTCAGTAATGATCCGAAGACGAAGGAA
CGGGTGAAAGAAACGCTTCCCAAAGAACACACGAACAAAGACATTCTATC
CAAATGCGGGGAGATGTGGCGGACCATGAATGATCAGGACAAGGAACCAT
ATGCAGCACAGGCTGAGAAGGACAAAGCTCGCTTCGAAAAAGAAATGGAT
GCCTTTATCAAGGCCGGCGGCTCGAAAAAAGCGCGGAAGGGTGGCAGCGG
AGGCAGCAAGGGCAAGACTGctaagccctccctcccttcccgcaccACCA
TTTCTGATACTAAGAAAcaagagaaaaaggaagggaaaggggaggaggcc
agggagaaaaagggaaacggaggcCAAGGAGCGACGAAACCGAAGGCGCT
TGATTTCGCATTTGAACATTTTATGGAGGCTGAGTTGAAGGCGGAAAAGC
CCGAACTGAAGGGTAAAAgtgagaaagaaaaacaaatctttttgaaaaag
aaatggGACGAAATGGACGAGAGTCAAAAAAAGGGTTGGACGTCCGCGGC
CCCTGGAAGTGAGAACAAGGACGCCCTCGTTGCCAAAGGCGCGAAAGGCG
TTCCCATGCCAGCGTCGCCCGCGACCACGGCGCAGCCAGAAGGGTccgaa
gaagaggtggagaaggaaagaggaaaggaggacggcgaggatgAGAtaga
gatggaagaggaagcaggagagggggcggggaatgAGACCGAAGACGCCT
GAATGGCTAAGCGGGCTTCATCTGCTGCTACCGAACTGGTACAGCCCAAG
GGACCGTGCAATGCGTACATGTGGTTCAGTAATGATCCGAAGACGAAGGA
ACGGGTGAAAGAAACGCTTCCCAAAGAACACACGAACAAAGACATTCTAT
CCAAATGCGGGGAGATGTGGCGGACCATGAATGATCAGGACAAGGAACCA
TATGCAGCACAGGCTGAGAAGGACAAAGCTCGCTTCGAAAAAGAAATGGA
TGCCTTTATCAAGGCCGGCGGCTCGAAAAAAGCGCGGAAGGGTGGCAGCG
GAGGCAGCAAGGGCAAGACTGctaagccctccctcccttcccgcaccACC
ATTTCTGATACTAAGAAAcaagagaaaaaggaagggaaaggggaggaggc
cagggagaaaaagggaaacggaggcCAAGGAGCGACGAAACCGAAGGCGC
TTGATTTCGCATTTGAACATTTTATGGAGGCTGAGTTGAAGGCGGAAAAG
CCCGAACTGAAGGGTAAAAgtgagaaagaaaaacaaatctttttgaaaaa
gaaatggGACGAAATGGACGAGAGTCAAAAAAAGGGTTGGACGTCCGCGG
CCCCTGGAAGTGAGAACAAGGACGCCCTCGTTGCCAAAGGCGCGAAAGGC
GTTCCCATGCCAGCGTCGCCCGCGACCACGGCGCAGCCAGAAGGGTccga
agaagaggtggagaaggaaagaggaaaggaggacggcgaggatgAGAtag
agatggaagaggaagcaggagagggggcggggaatgAGACCGAAGACGCC
TGAATGGCTAAGCGGGCTTCATCTGCTGCTACCGAACTGGTACAGCCCAA
GGGACCGTGCAATGCGTACATGTGGTTCAGTAATGATCCGAAGACGAAGG
AACGGGTGAAAGAAACGCTTCCCAAAGAACACACGAACAAAGACATTCTA
TCCAAATGCGGGGAGATGTGGCGGACCATGAATGATCAGGACAAGGAACC
ATATGCAGCACAGGCTGAGAAGGACAAAGCTCGCTTCGAAAAAGAAATGG
ATGCCTTTATCAAGGCCGGCGGCTCGAAAAAAGCGCGGAAGGGTGGCAGC
GGAGGCAGCAAGGGCAAGACTGctaagccctccctcccttcccgcaccAC
CATTTCTGATACTAAGAAAcaagagaaaaaggaagggaaaggggaggagg
ccagggagaaaaagggaaacggaggcCAAGGAGCGACGAAACCGAAGGCG
CTTGATTTCGCATTTGAACATTTTATGGAGGCTGAGTTGAAGGCGGAAAA
GCCCGAACTGAAGGGTAAAAgtgagaaagaaaaacaaatctttttgaaaa
agaaatggGACGAAATGGACGAGAGTCAAAAAAAGGGTTGGACGTCCGCG
GCCCCTGGAAGTGAGAACAAGGACGCCCTCGTTGCCAAAGGCGCGAAAGG
CGTTCCCATGCCAGCGTCGCCCGCGACCACGGCGCAGCCAGAAGGGTccg
aagaagaggtggagaaggaaagaggaaaggaggacggcgaggatgAGAta
gagatggaagaggaagcaggagagggggcggggaatgAGACCGAAGACGC
CTGA back to top
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