EWM26326.1, cds4335 (CDS) Nannochloropsis gaditana

Overview
NameEWM26326.1
Unique Namecds4335
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:341938..342069 +
Alignment locationCM002463.1:342241..342303 +
Alignment locationCM002463.1:342436..342823 +
Alignment locationCM002463.1:342996..343213 +

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Properties
Property NameValue
Protein idEWM26326.1
Producthigh mobility group protein tdp-1
Orig transcript idgnl|cribi|Naga_100078g24.7001.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:341938..342069 +
CM002463.1supercontigCM002463.1:342241..342303 +
CM002463.1supercontigCM002463.1:342436..342823 +
CM002463.1supercontigCM002463.1:342996..343213 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
Homology
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BLAST of EWM26326.1 vs. NCBI_GenBank
Match: gi|585108333|gb|EWM26326.1| (high mobility group protein tdp-1 [Nannochloropsis gaditana])

HSP 1 Score: 525.398 bits (1352), Expect = 0.000e+0
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0 
Query:    1 MAKRASSAATELVQPKGPCNAYMWFSNDPKTKERVKETLPKEHTNKDILSKCGEMWRTMNDQDKEPYAAQAEKDKARFEKEMDAFIKAGGSKKARKGGSGGSKGKTAKPSLPSRTTISDTKKQEKKEGKGEEAREKKGNGGQGATKPKALDFAFEHFMEAELKAEKPELKGKSEKEKQIFLKKKWDEMDESQKKGWTSAAPGSENKDALVAKGAKGVPMPASPATTAQPEGSEEEVEKERGKEDGEDEIEMEEEAGEGAGNETEDA 266
            MAKRASSAATELVQPKGPCNAYMWFSNDPKTKERVKETLPKEHTNKDILSKCGEMWRTMNDQDKEPYAAQAEKDKARFEKEMDAFIKAGGSKKARKGGSGGSKGKTAKPSLPSRTTISDTKKQEKKEGKGEEAREKKGNGGQGATKPKALDFAFEHFMEAELKAEKPELKGKSEKEKQIFLKKKWDEMDESQKKGWTSAAPGSENKDALVAKGAKGVPMPASPATTAQPEGSEEEVEKERGKEDGEDEIEMEEEAGEGAGNETEDA
Sbjct:    1 MAKRASSAATELVQPKGPCNAYMWFSNDPKTKERVKETLPKEHTNKDILSKCGEMWRTMNDQDKEPYAAQAEKDKARFEKEMDAFIKAGGSKKARKGGSGGSKGKTAKPSLPSRTTISDTKKQEKKEGKGEEAREKKGNGGQGATKPKALDFAFEHFMEAELKAEKPELKGKSEKEKQIFLKKKWDEMDESQKKGWTSAAPGSENKDALVAKGAKGVPMPASPATTAQPEGSEEEVEKERGKEDGEDEIEMEEEAGEGAGNETEDA 266
The following BLAST results are available for this feature:
BLAST of EWM26326.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108333|gb|EWM26326.1|0.000e+0100.00high mobility group protein tdp-1 [Nannochloropsis... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4345rna4345Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications