rna4343, rna4343 (mRNA) Nannochloropsis gaditana

Overview
Namerna4343
Unique Namerna4343
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2149
Alignment locationCM002463.1:339608..340379 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100078g26.6991.mrna
Orig protein idgnl|cribi|Naga_100078g26.6991
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:339608..340379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100078g26gene4187Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4343rna4343-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26316.1cds4333Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4343 ID=rna4343|Name=rna4343|organism=Nannochloropsis gaditana|type=mRNA|length=2149bp
CTCGCTTAAGCAGGCTTTAGTGTGCATGTTGCTCCACTAGTAATCATTCA
TTCAAAACGAAACTTCACCTCCGTTCGCAAGACCGGTCAGCCAACCGCTT
CGATTGATGCATGTTGTTGCTTAGATGCGTGGTTGGTTGTTCAAAGTTTA
TTTCCTCGACGCAATCTGCACAGGAAAAGCGTCTCCTCGCTTCCCTTCGG
CTTCTGGTGAGTCCGCCTGGATTCATTTAGCCCCCGACACCAAACTTAAT
TTTCGTCCGAGGCCAAAATGGAAACTCATCCGCCCATCGCAGCGTCGTTA
TTTTTTATCTCGGCTGCCACTGCAACGACGCTGGCCCTTTACAGCCGGAA
GCACAAAAAAGTCGCATTTTTCCGCGGCCCCGACATGTTGCATCCACCTC
CTGCCTCCTCAGAGGAAGACGGTCAGGCCCCCTCCGGGGCCAAAGTAATC
AAATACAAGTCGGTCAAAGACTCGAAACTTTCCTCTGAACTCAGCATCAA
AGACCTGGAGTGTGCGCACATCCACCAGGCCAACCTGCTGGAGATCCCTA
ACCTGGGAAAGACTTTCAAAGGTGCCCACGTCCAGAATCTTTCTCAGATG
AGCGGAACAACCTCGGGAGAATCGATTGCGTACAACAAATTGCTGGGCCA
CCAAGACGGGATTATTGCTGATATTGTCCGACGGGAGGGTTTGCCTCCTG
AGACGAAAGTTTACGTCCGCGCGGGTCCGCGCAAAGAGCTCCATTTCGAG
CCTGAGAAGGTGCGCGCGGCCATAGTCACGTGTGGAGGCCTCTGCCCCGG
GCTCAATAATGTCATCAGGGAGCTTGTCAATTCGCTTTTTCATCTCTACA
GGGCCCAGTCGGGCGTGTACGGGATCCGCGGAGGGTTCTCCGGCTTCCAT
GACGCGCACCGTCTGCCCATCATGCTCACCCCGGAGCTCGTGGATCAGAT
CCATCACGAGGGAGGGACGATCTTGGGGTCCTCCCGGGGCGGGTTCGATA
TCGACAAGATCATCCACTTCCTGGAAGAGAAGCAAATTTGCCAGCTGTAC
ATTATTGGCGGGGACGGGACGCACCGTGGAGCGAACAAGATCGGGGAGGA
GTGCCTGAAGCGAGGCCTGAACATCGCCGTGGTGGGCATCCCCAAGACCA
TCGACAACGACGTGGACTTGATCGACCGATCCTTCGGGTTCCAGACCTCG
GTGGAGGCAGCGCAGGCGGCGATCCGATGCGCCAAGACGGAGGCGATTTG
CAACTTGCCGAACGGGATCGGGGTGGTGAAGCTGATGGGCCGCTCGGCCG
GTTTCATCGCGGTGCATGCCACGTTGGCGAGCGGGGACGTGGATTTGTGT
CTGATCCCGGAGGTGCCCATAGTCCTGGAGGGAGAGCGGGGTTGTCTGCC
CCATTTGGCCCAGCGCGTGCAACAAAAAGGGCACGCGGTGGTGGTGGTGG
CGGAAGGGGCGGGGGAGGAGCTGTTAGGCCAGTCGGCGGAAAAGGACGCG
AGCGGGAACAAGAAACTCCCGGCCATCGGCCAGTTCTTGAAGGAGAAGAT
CGGGATCTACTTCAAGTCCCAGGGGCAGCCGTCCACGGTCAAGTACATCG
ACCCTTCCTACATGGTCCGCTCCGTCCCCGCCAATGCCGCCGACTCCATC
TACTGCTCCCTCCTCGCCCAGAACGCGGTCCACGGTGCCATGGCGGGCTT
TACTCAGTTCACGGTGGGCCTCTGCAACAACCGGCTCGTTTACTTGCCCA
TCCCCCTGGTGGTGGCGACCAGCCCTCGAGTCATGGATCCCGTGGGTCGG
ACCTGGGAGAGGGTCTTAAGTGTGACGCGCCAGCCCAACACGGCCATACA
GCTGGGCAAGGACAAAATCACCTCCGCCAAGACCTTTTTGTAGGGGGTTG
GGGGGGGGGGGAACGGTTTGAATAGGAAGGGGGGCTGGAAAGAGGGAATT
ATACATAGGTTTTATGTGGAGGTGCAGCGTAGAGAAACCATTTGCGTATG
TATGGCTGTGTTTTTCGTCTTGAGGGGCATCTACTCGCTCCTGGAACAGG
GGCGTGCGAATCGCCTGAATGGCATGTTATGAGCGTTCAAAAGAAAGGAC
AAGGGGGGACGGACCGAGCATACATGACGAGTCAATACTCCACAAGGCT
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protein sequence of rna4343

>rna4343-protein ID=rna4343-protein|Name=rna4343|organism=Nannochloropsis gaditana|type=polypeptide|length=177bp
VFSRRGFRLDGRICCCCVFSRRGFRLGGRTCCCCVFSRRGFRLGGRICCV
FSRRGFRLGGRICCCCIFSRRGFRLGGRICCCCIFSRRGFRLGGRICCCC
IFSRRGFRLGGKICCVFSRRGFRLGGIIGLFWDFALLRWRNHMTVDLCGE
RTHRHWEGDQVGNNLCAQGPVSFDLRG
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mRNA from alignment at CM002463.1:339608..340379+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4343 ID=rna4343|Name=rna4343|organism=Nannochloropsis gaditana|type=mRNA|length=772bp|location=Sequence derived from alignment at CM002463.1:339608..340379+ (Nannochloropsis gaditana)
GTCTTCAGCAGGAGGGGCTTCAGGCTCGACGGGAGgatctgctgctgctg
cgtcTTCAGCAGGAGGGGCTTCAGGCTCGGCGGGAGgacctgctgctgct
gcgtcTTCAGCAGGAGGGGCTTCAGGCTCGGCGGGAGGATCTGCTGCGTC
TTCAGCAGGAGGGGCTTCAGGCTCGGCGGGAGgatctgctgctgctgcat
ctTCAGCAGGAGGGGCTTCAGGCTCGGCGGGAGgatctgctgctgctgca
tctTCAGCAGGAGGGGCTTCAGGCTCGGCGGGAGgatctgctgctgctgc
atctTCAGCAGGAGGGGCTTCAGGCTCGGCGGGAAGATCTGCTGCGTCTT
CAGCAGGAGGGGCTTCAGGCTCGGCGGCATTATCGGCCTCTTTTGGgact
tcgccctcctccgctggCGAAATCATATGACAGTCGATTTGTGTGGTGAA
AGGACCCACAGGCACTGGGAGGGAGATCAAGTGGGGAATAATCTGTGCGC
GCAGGGACCCGTGAGCTTTGATTTGCGTGGTTAGACCATTCCCGACGCAG
TCCTCCCCAATCTGAGAGATCTCCGATGCGTCCGTGTGAATCTCTGCCTT
TAGCTGAAAGTTTCTGGACCTATGGGGTGGTACAGCGACAATTTTCTCGT
GCGAAGCCGTGCCAACGTAGTGGCCTTGAAAATCTGTGCGTGCATAGATT
TGATTGTGACATGAGTGCCGGGGGAGAGTGAAGACGGACCAATCGTGCTA
CACAAGGccaaaaagagaaaga
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Coding sequence (CDS) from alignment at CM002463.1:339608..340379+

>rna4343 ID=rna4343|Name=rna4343|organism=Nannochloropsis gaditana|type=CDS|length=534bp|location=Sequence derived from alignment at CM002463.1:339608..340379+ (Nannochloropsis gaditana)
GTCTTCAGCAGGAGGGGCTTCAGGCTCGACGGGAGgatctgctgctgctg
cgtcTTCAGCAGGAGGGGCTTCAGGCTCGGCGGGAGgacctgctgctgct
gcgtcTTCAGCAGGAGGGGCTTCAGGCTCGGCGGGAGGATCTGCTGCGTC
TTCAGCAGGAGGGGCTTCAGGCTCGGCGGGAGgatctgctgctgctgcat
ctTCAGCAGGAGGGGCTTCAGGCTCGGCGGGAGgatctgctgctgctgca
tctTCAGCAGGAGGGGCTTCAGGCTCGGCGGGAGgatctgctgctgctgc
atctTCAGCAGGAGGGGCTTCAGGCTCGGCGGGAAGATCTGCTGCGTCTT
CAGCAGGAGGGGCTTCAGGCTCGGCGGCATTATCGGCCTCTTTTGGgact
tcgccctcctccgctggCGAAATCATATGACAGTCGATTTGTGTGGTGAA
AGGACCCACAGGCACTGGGAGGGAGATCAAGTGGGGAATAATCTGTGCGC
GCAGGGACCCGTGAGCTTTGATTTGCGTGGTTAG
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Synonyms
Publications