EWM26316.1, cds4333 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26316.1
Unique Name	cds4333
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002463.1:339608..340141 +

Link to JBrowse

Properties


Property Name	Value
Start range	339608
Start range	.
Protein id	EWM26316.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_100078g26.6991.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:339608..340141 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM26316.1 vs. NCBI_GenBank
Match: gi|585108323|gb|EWM26316.1| (hypothetical protein Naga_100078g26, partial [Nannochloropsis gaditana])

HSP 1 Score: 319.316 bits (817), Expect = 1.160e-109
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0

Query:    1 VFSRRGFRLDGRICCCCVFSRRGFRLGGRTCCCCVFSRRGFRLGGRICCVFSRRGFRLGGRICCCCIFSRRGFRLGGRICCCCIFSRRGFRLGGRICCCCIFSRRGFRLGGKICCVFSRRGFRLGGIIGLFWDFALLRWRNHMTVDLCGERTHRHWEGDQVGNNLCAQGPVSFDLRG 177
            VFSRRGFRLDGRICCCCVFSRRGFRLGGRTCCCCVFSRRGFRLGGRICCVFSRRGFRLGGRICCCCIFSRRGFRLGGRICCCCIFSRRGFRLGGRICCCCIFSRRGFRLGGKICCVFSRRGFRLGGIIGLFWDFALLRWRNHMTVDLCGERTHRHWEGDQVGNNLCAQGPVSFDLRG
Sbjct:    1 VFSRRGFRLDGRICCCCVFSRRGFRLGGRTCCCCVFSRRGFRLGGRICCVFSRRGFRLGGRICCCCIFSRRGFRLGGRICCCCIFSRRGFRLGGRICCCCIFSRRGFRLGGKICCVFSRRGFRLGGIIGLFWDFALLRWRNHMTVDLCGERTHRHWEGDQVGNNLCAQGPVSFDLRG 177

The following BLAST results are available for this feature:

BLAST of EWM26316.1 vs. NCBI_GenBank

BLAST of EWM26316.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585108323\|gb\|EWM26316.1\|	1.160e-109	100.00	hypothetical protein Naga_100078g26, partial [Nann...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna4343	rna4343	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications