rna4342, rna4342 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4342
Unique Name	rna4342
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1380
Alignment location	CM002463.1:331619..334008 +

Link to JBrowse

Properties


Property Name	Value
Product	pyrophosphate-dependent phosphofructose kinase
Orig transcript id	gnl\|cribi\|Naga_100268g2.9475.mrna
Orig protein id	gnl\|cribi\|Naga_100268g2.9475
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:331619..334008 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100268g2	gene4185	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4342	rna4342-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26350.1	cds4332	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:331619..334008+
coding sequence from alignment at CM002463.1:331619..334008+

mRNA sequence

>rna4342 ID=rna4342|Name=rna4342|organism=Nannochloropsis gaditana|type=mRNA|length=1380bp
ATGGCTATTTCACCTCGAAAGCCCGACGTCCAGAACGATGGCCATGAACC
CAAAATTCAGGACGTCGTAGTGGTTGGCGCGGGCATCGCGGGGCTTGCGG
TTGCTAATGCCCTTCGACTCAAGGGTATAAATGTCACTGTTTACGAACGT
GCGTCACAATTGGATCGACAACGGGGAGCGGGTACGGGCTTGAGTCCCAA
CGGCCAACGATGTCTGCACGCGCTGGGATTCTCTCATGAGATGGTGTTGG
ACGTGTCCACCCCTATTCGTGAACACATCCTCTGCAACGAAGACCGAGTG
CTGGTCCGCTCTGATTACCCCTGGCGTTTGTATGAAAAATACAAGATGCC
TATCACAGGAACGTTGAGGGGAGGTTTAGTAAATATGATGGCCGAACCCC
TTCGAAAAAGCAAAAGCCTTCATTGCGGCGAAGCTGTAACAAACGTGGAG
GAACGTCCTGGAACGGGGAAAATTATTGTCACATTGGCCTCGGGAAAAAC
CCATGAGACCGATTTGGTGGTAGGAGCAGACGGCATTCACAGCACGTTGG
CCCCCTTGGTGCTGGGCAAGGAGATGGATCCTCCCATATACACAGGCTCT
TCTATTTTTTTTGGTGTCATCGACAACTTTCAGAAAGGCCCGCAATCTTT
GCCACCCGCAGACACGACTCAATTGGCAGGTCTCATTGATCACCCTGCGG
CCATCGTCCAGGTCCTTGGGCCCATCAAACTCTTCCTCGTGGCCGGGGGG
GCAGGCTCGGAGAAAAAATTGGTGTGGAAACTGAGCTATCCCACGCAAAC
GCCTCCGATGCGCAAGGAATGGGCTCTCGCTGAAGGGACAGTCCGCAAGG
AGGTGCAGGCATACCTTGACGAACGTAGGAATTCTGGGGCGAAAGTTGCC
ACCATCTCCGTTATCCAGGACTTGCTGGATCGTACATCCGACGCCCGATT
GCTCCATTTTGGGCTCTTCTCCCGCAAGGAGAAGGCGTACTGGCACAAGG
ATCGCCTGGTTCTAATTGGTGACGCGGCGCATGCTACCTTGCCGCATGTC
GGACAGGGTGCGAACATGGCACTGGAGGACGCCGTGGTCCTGGCCGATGC
CCTGGAGGCGCACGACTTTCGGCACGTGGAAGCCGCCTTGAGTTCTTTTT
ATGCCCGGCGGCGGGAACGAACGAAGCGGATAGTGGAGTCGAGTAGGGTC
ATGGGCTGGTTCTTGGACGCGCGGACTCCAGTGGGCGTGTGGCTGAGGAA
TGCCGTATTGGTGGGGGCCATGCGGATGGATTGCAACTATAGCAATTTCC
ACGCCCCTGAAATACCAGATGATACCAGCCATGGCTGCAAAGGAGTGCGC
TTGCAGGATCAGTCCGGCGTCTCACGCTGA

protein sequence of rna4342

>rna4342-protein ID=rna4342-protein|Name=rna4342|organism=Nannochloropsis gaditana|type=polypeptide|length=541bp
METHPPIAASLFFISAATATTLALYSRKHKKVAFFRGPDMLHPPPASSEE
DGQAPSGAKVIKYKSVKDSKLSSELSIKDLECAHIHQANLLEIPNLGKTF
KGAHVQNLSQMSGTTSGESIAYNKLLGHQDGIIADIVRREGLPPETKVYV
RAGPRKELHFEPEKVRAAIVTCGGLCPGLNNVIRELVNSLFHLYRAQSGV
YGIRGGFSGFHDAHRLPIMLTPELVDQIHHEGGTILGSSRGGFDIDKIIH
FLEEKQICQLYIIGGDGTHRGANKIGEECLKRGLNIAVVGIPKTIDNDVD
LIDRSFGFQTSVEAAQAAIRCAKTEAICNLPNGIGVVKLMGRSAGFIAVH
ATLASGDVDLCLIPEVPIVLEGERGCLPHLAQRVQQKGHAVVVVAEGAGE
ELLGQSAEKDASGNKKLPAIGQFLKEKIGIYFKSQGQPSTVKYIDPSYMV
RSVPANAADSIYCSLLAQNAVHGAMAGFTQFTVGLCNNRLVYLPIPLVVA
TSPRVMDPVGRTWERVLSVTRQPNTAIQLGKDKITSAKTFL

mRNA from alignment at CM002463.1:331619..334008+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4342 ID=rna4342|Name=rna4342|organism=Nannochloropsis gaditana|type=mRNA|length=2390bp|location=Sequence derived from alignment at CM002463.1:331619..334008+ (Nannochloropsis gaditana)
CTCGCTTAAGCAGGCTTTAGTGTGCATGTTGCTCCACTAGTAATCATTCA
TTCAAAACGAAACTTCACCTCCGTTCGCAAGACCGGTCAGCCAACCGCTT
CGATTGATGCATGTTGTTGCTTAGATGCGTGGTTGGTTGTTCAAAGTTTA
TTTCCTCGACGCAATCTGCACAGGAAAAGcgtctcctcgcttcccttcgG
CTTCTGGTGAGTCCGCCTGGATTCATTTAGCCCCCGACACCAAACTTAAT
TTTCGTCCGAGGCCAAAATGGAAACTCATCCGCCCATCGCAGCGTCGTTA
TTTTTTATCTCGGCTGCCACTGCAACGACGCTGGCCCTTTACAGCCGGAA
GCACAAAAAAGTCGCATTTTTCCGCGGCCCCGACATGTTGCatccacctc
ctgcctcctcagAGGAAGACGGTCAGGCCCCCTCCGGGGCCAAAGTAATC
AAATACAAGTCGGTCAAAGACTCGAAACTTTCCTCTGAACTCAGCATCAA
AGACCTGGAGTGTGCGCACATCCACCAGGCCAACCTGCTGGAGATCCCTA
ACCTGGGAAAGACTTTCAAAGGTGCCCACGTCCAGAATCTTTCTCAGATG
AGCGGAACAACCTCGGGAGAATCGATTGCGTACAACAAATTGCTGGGCCA
CCAAGACGGGATTATTGCTGATATTGTCCGACGGGAGGGTTTGCCTCCTG
AGACGAAAGTTTACGTCCGCGCGGGTCCGCGCAAAGAGCTCCATTTCGAG
CCTGAGAAGGTGCGCGCGGCCATAGTCACGTGTGGAGGCCTCTGCCCCGG
GCTCAATAATGTCATCAGGGAGCTTGTCAATTCGCTTTTTCATCTCTACA
GGGCCCAGGTGAGTCTCATGGACGGGTAGGGAGGGTGCATGTATGTCCGT
TTATGGGACGCGTGATATCCGGAGGCACACCCCACGCACTGTCTCACTCT
TTTGACTAGTAAAGGGGCATGCTGGCCCGTCGTATGTACCAAACGGTTTG
ATGCATCTTTCACTCAAGGGCCCATATTTCCTTACCTTGTTCCTTCGTCC
CTGCgatccccttttccccctcgtcccctccctctttttgaaTGCCCAGT
CGGGCGTGTACGGGATCCGCGGAGGGTTCTCCGGCTTCCATGACGCGCAC
CGTCTGCCCATCATGCTCACCCCGGAGCTCGTGGATCAGATCCatcacga
gggagggacgatcTTGGGGTCCTCCCGGGGCGGGTTCGATATCGACAAGA
TCATCCACTTCCTGGAAGAGAAGCAAATTTGCCAGCTGTACATTattggc
ggggacgggacgCACCGTGGAGCGAACAAGATCGGGGAGGAGTGCCTGAA
GCGAGGCCTGAACATCGCCGTGGTGGGCATCCCCAAGACCATCGACAACG
ACGTGGACTTGATCGACCGATCCTTCGGGTTCCAGACCTCGGTGGAGGCA
GCGCAGGCGGCGATCCGATGCGCCAAGACGGAGGCGATTTGCAACTTGCC
GAACGGGATCGGGGTGGTGAAGCTGATGGGCCGCTCGGCCGGTTTCATCG
CGGTGCATGCCACGTTGGCGAGCGGGGACGTGGATTTGTGTCTGATCCCG
GAGGTGCCCATAgtcctggagggagagcggggttGTCTGCCCCATTTGGC
CCAGCGCGTGCAACAAAAAGGGCacgcggtggtggtggtggcggaagggg
cgggggaggagctgtTAGGCCAGTCGGCGGAAAAGGACGCGAGCGGGAAC
AAGAAACTCCCGGCCATCGGCCAGTTcttgaaggagaagatcggGATCTA
CTTCAAGTCCCAGGGGCAGCCGTCCACGGTCAAGTACATCGACCCTTCCT
ACATGGTccgctccgtccccgccaatGCCGCCGACTCCATCtactgctcc
ctcctcgcccagaaCGCGGTCCACGGTGCCATGGCGGGCTTTACTCAGTT
CACGGTGGGCCTCTGCAACAACCGGCTCGTTTACTTGCCCATCCccctgg
tggtggcgacCAGCCCTCGAGTCATGGATCCCGTGGGTCGGACCTGGGAG
AGGGTCTTAAGTGTGACGCGCCAGCCCAACACGGCCATACAGCTGGGCAA
GGACAAAATCACCTCCGCCAAGACCTTTTTGTagggggttgggggggggg
ggaacggtttgaataggaaggggggctggaaagagggaatTATACATAGG
TTTTATGTGGAGGTGCAGCGTAGAGAAACCATTTGCGTATGTATGGCTGT
GTTTTTCGTCTTGAGGGGCATCTACTCGCTCCTGGAACAGGGGCGTGCGA
ATCGCCTGAATGGCATGTTATGAGCGTTCAAAAgaaaggacaagggggga
cGGACCGAGCATACATGACGAGTCAATACTCCACAAGGCT

Coding sequence (CDS) from alignment at CM002463.1:331619..334008+

>rna4342 ID=rna4342|Name=rna4342|organism=Nannochloropsis gaditana|type=CDS|length=3252bp|location=Sequence derived from alignment at CM002463.1:331619..334008+ (Nannochloropsis gaditana)
ATGGAAACTCATCCGCCCATCGCAGCGTCGTTATTTTTTATCTCGGCTGC
CACTGCAACGACGCTGGCCCTTTACAGCCGGAAGCACAAAAAAGTCGCAT
TTTTCCGCGGCCCCGACATGTTGCatccacctcctgcctcctcagAGGAA
GACGGTCAGGCCCCCTCCGGGGCCAAAGTAATCAAATACAAGTCGGTCAA
AGACTCGAAACTTTCCTCTGAACTCAGCATCAAAGACCTGGAGTGTGCGC
ACATCCACCAGGCCAACCTGCTGGAGATCCCTAACCTGGGAAAGACTTTC
AAAGGTGCCCACGTCCAGAATCTTTCTCAGATGAGCGGAACAACCTCGGG
AGAATCGATTGCGTACAACAAATTGCTGGGCCACCAAGACGGGATTATTG
CTGATATTGTCCGACGGGAGGGTTTGCCTCCTGAGACGAAAGTTTACGTC
CGCGCGGGTCCGCGCAAAGAGCTCCATTTCGAGCCTGAGAAGGTGCGCGC
GGCCATAGTCACGTGTGGAGGCCTCTGCCCCGGGCTCAATAATGTCATCA
GGGAGCTTGTCAATTCGCTTTTTCATCTCTACAGGGCCCAGTCGGGCGTG
TACGGGATCCGCGGAGGGTTCTCCGGCTTCCATGACGCGCACCGTCTGCC
CATCATGCTCACCCCGGAGCTCGTGGATCAGATCCatcacgagggaggga
cgatcTTGGGGTCCTCCCGGGGCGGGTTCGATATCGACAAGATCATCCAC
TTCCTGGAAGAGAAGCAAATTTGCCAGCTGTACATTattggcggggacgg
gacgCACCGTGGAGCGAACAAGATCGGGGAGGAGTGCCTGAAGCGAGGCC
TGAACATCGCCGTGGTGGGCATCCCCAAGACCATCGACAACGACGTGGAC
TTGATCGACCGATCCTTCGGGTTCCAGACCTCGGTGGAGGCAGCGCAGGC
GGCGATCCGATGCGCCAAGACGGAGGCGATTTGCAACTTGCCGAACGGGA
TCGGGGTGGTGAAGCTGATGGGCCGCTCGGCCGGTTTCATCGCGGTGCAT
GCCACGTTGGCGAGCGGGGACGTGGATTTGTGTCTGATCCCGGAGGTGCC
CATAgtcctggagggagagcggggttGTCTGCCCCATTTGGCCCAGCGCG
TGCAACAAAAAGGGCacgcggtggtggtggtggcggaaggggcgggggag
gagctgtTAGGCCAGTCGGCGGAAAAGGACGCGAGCGGGAACAAGAAACT
CCCGGCCATCGGCCAGTTcttgaaggagaagatcggGATCTACTTCAAGT
CCCAGGGGCAGCCGTCCACGGTCAAGTACATCGACCCTTCCTACATGGTc
cgctccgtccccgccaatGCCGCCGACTCCATCtactgctccctcctcgc
ccagaaCGCGGTCCACGGTGCCATGGCGGGCTTTACTCAGTTCACGGTGG
GCCTCTGCAACAACCGGCTCGTTTACTTGCCCATCCccctggtggtggcg
acCAGCCCTCGAGTCATGGATCCCGTGGGTCGGACCTGGGAGAGGGTCTT
AAGTGTGACGCGCCAGCCCAACACGGCCATACAGCTGGGCAAGGACAAAA
TCACCTCCGCCAAGACCTTTTTGTagATGGAAACTCATCCGCCCATCGCA
GCGTCGTTATTTTTTATCTCGGCTGCCACTGCAACGACGCTGGCCCTTTA
CAGCCGGAAGCACAAAAAAGTCGCATTTTTCCGCGGCCCCGACATGTTGC
atccacctcctgcctcctcagAGGAAGACGGTCAGGCCCCCTCCGGGGCC
AAAGTAATCAAATACAAGTCGGTCAAAGACTCGAAACTTTCCTCTGAACT
CAGCATCAAAGACCTGGAGTGTGCGCACATCCACCAGGCCAACCTGCTGG
AGATCCCTAACCTGGGAAAGACTTTCAAAGGTGCCCACGTCCAGAATCTT
TCTCAGATGAGCGGAACAACCTCGGGAGAATCGATTGCGTACAACAAATT
GCTGGGCCACCAAGACGGGATTATTGCTGATATTGTCCGACGGGAGGGTT
TGCCTCCTGAGACGAAAGTTTACGTCCGCGCGGGTCCGCGCAAAGAGCTC
CATTTCGAGCCTGAGAAGGTGCGCGCGGCCATAGTCACGTGTGGAGGCCT
CTGCCCCGGGCTCAATAATGTCATCAGGGAGCTTGTCAATTCGCTTTTTC
ATCTCTACAGGGCCCAGTCGGGCGTGTACGGGATCCGCGGAGGGTTCTCC
GGCTTCCATGACGCGCACCGTCTGCCCATCATGCTCACCCCGGAGCTCGT
GGATCAGATCCatcacgagggagggacgatcTTGGGGTCCTCCCGGGGCG
GGTTCGATATCGACAAGATCATCCACTTCCTGGAAGAGAAGCAAATTTGC
CAGCTGTACATTattggcggggacgggacgCACCGTGGAGCGAACAAGAT
CGGGGAGGAGTGCCTGAAGCGAGGCCTGAACATCGCCGTGGTGGGCATCC
CCAAGACCATCGACAACGACGTGGACTTGATCGACCGATCCTTCGGGTTC
CAGACCTCGGTGGAGGCAGCGCAGGCGGCGATCCGATGCGCCAAGACGGA
GGCGATTTGCAACTTGCCGAACGGGATCGGGGTGGTGAAGCTGATGGGCC
GCTCGGCCGGTTTCATCGCGGTGCATGCCACGTTGGCGAGCGGGGACGTG
GATTTGTGTCTGATCCCGGAGGTGCCCATAgtcctggagggagagcgggg
ttGTCTGCCCCATTTGGCCCAGCGCGTGCAACAAAAAGGGCacgcggtgg
tggtggtggcggaaggggcgggggaggagctgtTAGGCCAGTCGGCGGAA
AAGGACGCGAGCGGGAACAAGAAACTCCCGGCCATCGGCCAGTTcttgaa
ggagaagatcggGATCTACTTCAAGTCCCAGGGGCAGCCGTCCACGGTCA
AGTACATCGACCCTTCCTACATGGTccgctccgtccccgccaatGCCGCC
GACTCCATCtactgctccctcctcgcccagaaCGCGGTCCACGGTGCCAT
GGCGGGCTTTACTCAGTTCACGGTGGGCCTCTGCAACAACCGGCTCGTTT
ACTTGCCCATCCccctggtggtggcgacCAGCCCTCGAGTCATGGATCCC
GTGGGTCGGACCTGGGAGAGGGTCTTAAGTGTGACGCGCCAGCCCAACAC
GGCCATACAGCTGGGCAAGGACAAAATCACCTCCGCCAAGACCTTTTTGT
ag

Synonyms

Publications