rna434, rna434 (mRNA) Nannochloropsis gaditana

Overview
Namerna434
Unique Namerna434
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length801
Alignment locationCM002455.1:1076894..1077825 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g48.1860.mrna
Orig protein idgnl|cribi|Naga_100003g48.1860
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1076894..1077825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g48gene418Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna434rna434-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30343.1cds434Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna434 ID=rna434|Name=rna434|organism=Nannochloropsis gaditana|type=mRNA|length=801bp
TGGACAGAAGTTAACTTCATCGATGCTTTGATTCCAGGTACAGGTCGAGC
ACGATGCGCGCTCTCAGCGTGGGCCTCATTCTAGCCACGATAGTTGGAGC
GGCAGCTTTTGTCGTACCGCCCCTCTCTCTTCCATCACGTGACTTCAAAA
TTCGTTTAAGCGCTGGAGGAAACGAGGACTGTGGCACGAGCCTTGAACGC
CGCTCCGCCTTGCACAATTCTCTGTGTCAGGCAGTGACCCTGTCGATGTT
CATGTTTGGCGGTGCTACTTGGATCTCCGCGCCGTCTCAAGCCATGGCAG
CGGTTGGAGAAGGTGGATTGCCCGCCGTTACAGAGGCATTTCAGCGCGTC
ATTCGCGGTCAGAGAGAATGGAATAAGGTGGGGAAAACGATTGCTGACAG
GGAAGGGAAGCTGGCGGACGAGGAATGGGTGAATACTCAGATCTTCTTGC
GAAATTCTTATATGGTGGGCGAGGACATGCGGCGAATCGTTCGCGATGCT
GAGGAGAGCAAGCGGGAAAAGGGCACGGCCATTGCCAAAGATTTTCAACG
TCTGACCCTGGACATGGATAAGCCTACCAAAAGCAAAGACTTTCAGGGCT
TCATCGAGGCGCAGAAGAAGGGCGCTTCCTACTTCCAGGACTTCATAGAC
CTGCTGAGCGACGTGCCCGACGAGCTGTAAGGAAAGAGTGATATTGCTTT
TTAAAAGCATGACTTGTTAAATGCACAGATGGCAGTCAGATATTCTCGGC
CGATGAAACGCCTTGAGTGAAAGAAACAAAACAAAACCAGAGTGCCATGC
C
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protein sequence of rna434

>rna434-protein ID=rna434-protein|Name=rna434|organism=Nannochloropsis gaditana|type=polypeptide|length=214bp
MMSRFASFFGRGAGNEGENEQTHAPAPAPAPVPHQQQPHRHHNQQQASHR
QPAPPPQGKASASTGNRPRSGSSGNSGSSRHKTGKRRGTSKTGPPAGGLS
PRSVSALAKLEDYAHDADALEKLLASVELCLQDYPRTPRARLLEAKDQIA
QMNGNLEKLQYNGVDSIITAELESGKEKAKEKRKALNQRCDSLRERILQN
SRDLAKMLTAGAGK
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mRNA from alignment at CM002455.1:1076894..1077825+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna434 ID=rna434|Name=rna434|organism=Nannochloropsis gaditana|type=mRNA|length=932bp|location=Sequence derived from alignment at CM002455.1:1076894..1077825+ (Nannochloropsis gaditana)
AGTGACATGGCTGTCGAAGGAAGTGCAGACTCGGTCACCTTCTAAACACA
TTTCGCGACCACAGGTAGATTCAGGGTCGACGCAAATGATGAGCCgcttc
gcctctttctttggCCGTGGCGCCgggaatgaaggggaaaacGAGCAAAC
GCACgctcccgcgcccgcccccgcgcccgTTCCCCACCAACAGCAACCAC
ATCGACACCATAATCAGCAACAAGCGTCACACCGGCAgccagcacctccg
ccaCAAGGGAAGGCTTCTGCTTCTACCGGCAATCGTCCACGCTCTGGGAG
CAGCGGAAACAGTGGGAGCTCCCGGCAtaagacggggaagaggagaggga
cttCGAAGACAGGGCCTCCTGCGGGAGGCCTTTCTCCACGCTCAGTGTCT
GCCCTTGCGAAACTGGAAGATTACGCTCACGATGCTGATGCGTTGGAAAA
GCTATTGGCAAGCGTGGAGTTGTGTTTGCAAGATTATCCGCGCACTCCAA
GGGCACGGTTGTTGGAAGCCAAAGATCAAATCGCTCAAATGAATGGAAAT
CTTGAGAAGCTACAATACAACGGCGTCGACTCTATCATAACGGCTGAACT
GGAgagtgggaaagaaaaagcaaaggaAAAGCGAAAAGCCTTGAATCAAC
GGTGTGACAGCTTGCGGGAGCGAATATTGCAGAATTCTAGAGACCTGGCA
AAAATGTTGActgcaggggcagggaaatAAAGCAGTTGCACAAAAGTTCG
AAACAAATTATAAATTGAAGCACCTTTGTCTACTCTCTTGTGATAATGGA
TAATCTAAACACAAGCCTGGGCAAAGCTCTTGCTCAGGCATCGTGCTCAC
ACATTGCTAGTATCATACGTGTACTTTATTGATTTAGGATAAGCGTATCA
TTCGATATCTCATAAGTACTGCGTACTGTTGT
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Coding sequence (CDS) from alignment at CM002455.1:1076894..1077825+

>rna434 ID=rna434|Name=rna434|organism=Nannochloropsis gaditana|type=CDS|length=645bp|location=Sequence derived from alignment at CM002455.1:1076894..1077825+ (Nannochloropsis gaditana)
ATGATGAGCCgcttcgcctctttctttggCCGTGGCGCCgggaatgaagg
ggaaaacGAGCAAACGCACgctcccgcgcccgcccccgcgcccgTTCCCC
ACCAACAGCAACCACATCGACACCATAATCAGCAACAAGCGTCACACCGG
CAgccagcacctccgccaCAAGGGAAGGCTTCTGCTTCTACCGGCAATCG
TCCACGCTCTGGGAGCAGCGGAAACAGTGGGAGCTCCCGGCAtaagacgg
ggaagaggagagggacttCGAAGACAGGGCCTCCTGCGGGAGGCCTTTCT
CCACGCTCAGTGTCTGCCCTTGCGAAACTGGAAGATTACGCTCACGATGC
TGATGCGTTGGAAAAGCTATTGGCAAGCGTGGAGTTGTGTTTGCAAGATT
ATCCGCGCACTCCAAGGGCACGGTTGTTGGAAGCCAAAGATCAAATCGCT
CAAATGAATGGAAATCTTGAGAAGCTACAATACAACGGCGTCGACTCTAT
CATAACGGCTGAACTGGAgagtgggaaagaaaaagcaaaggaAAAGCGAA
AAGCCTTGAATCAACGGTGTGACAGCTTGCGGGAGCGAATATTGCAGAAT
TCTAGAGACCTGGCAAAAATGTTGActgcaggggcagggaaatAA
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Synonyms
Publications