EWM30343.1, cds434 (CDS) Nannochloropsis gaditana

Overview
NameEWM30343.1
Unique Namecds434
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1076979..1077623 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30343.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g48.1860.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1076979..1077623 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30343.1 vs. NCBI_GenBank
Match: gi|585113002|gb|EWM30343.1| (hypothetical protein Naga_100003g48 [Nannochloropsis gaditana])

HSP 1 Score: 436.417 bits (1121), Expect = 7.676e-155
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
Query:    1 MMSRFASFFGRGAGNEGENEQTHAPAPAPAPVPHQQQPHRHHNQQQASHRQPAPPPQGKASASTGNRPRSGSSGNSGSSRHKTGKRRGTSKTGPPAGGLSPRSVSALAKLEDYAHDADALEKLLASVELCLQDYPRTPRARLLEAKDQIAQMNGNLEKLQYNGVDSIITAELESGKEKAKEKRKALNQRCDSLRERILQNSRDLAKMLTAGAGK 214
            MMSRFASFFGRGAGNEGENEQTHAPAPAPAPVPHQQQPHRHHNQQQASHRQPAPPPQGKASASTGNRPRSGSSGNSGSSRHKTGKRRGTSKTGPPAGGLSPRSVSALAKLEDYAHDADALEKLLASVELCLQDYPRTPRARLLEAKDQIAQMNGNLEKLQYNGVDSIITAELESGKEKAKEKRKALNQRCDSLRERILQNSRDLAKMLTAGAGK
Sbjct:    1 MMSRFASFFGRGAGNEGENEQTHAPAPAPAPVPHQQQPHRHHNQQQASHRQPAPPPQGKASASTGNRPRSGSSGNSGSSRHKTGKRRGTSKTGPPAGGLSPRSVSALAKLEDYAHDADALEKLLASVELCLQDYPRTPRARLLEAKDQIAQMNGNLEKLQYNGVDSIITAELESGKEKAKEKRKALNQRCDSLRERILQNSRDLAKMLTAGAGK 214          
BLAST of EWM30343.1 vs. NCBI_GenBank
Match: gi|813131730|ref|XP_012197713.1| (hypothetical protein SPRG_03754 [Saprolegnia parasitica CBS 223.65] >gi|641537990|gb|KDO31834.1| hypothetical protein SPRG_03754 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-14
Identity = 33/62 (53.23%), Postives = 49/62 (79.03%), Query Frame = 0
Query:  137 TPRARLLEAKDQIAQMNGNLEKLQYNGVDSIITAELESGKEKAKEKRKALNQRCDSLRERIL 198
             P+  L+E+KD IAQM G+L+KLQ+NGVD IITA+L +GK   +++RK LN++C+S+R  +L
Sbjct:   49 VPKKELVESKDAIAQMCGSLDKLQFNGVDGIITADLVTGKADIRDQRKLLNKQCESIRTTML 110          
BLAST of EWM30343.1 vs. NCBI_GenBank
Match: gi|1173945098|gb|OQR93765.1| (hypothetical protein ACHHYP_02310 [Achlya hypogyna])

HSP 1 Score: 76.6406 bits (187), Expect = 1.950e-14
Identity = 33/63 (52.38%), Postives = 49/63 (77.78%), Query Frame = 0
Query:  136 RTPRARLLEAKDQIAQMNGNLEKLQYNGVDSIITAELESGKEKAKEKRKALNQRCDSLRERIL 198
            + PR  L EAKD +AQ+ G L+KLQ+NGVD IITA+L SGK+  +++RK LN++C+++R  +L
Sbjct:   50 KVPRKELAEAKDALAQLCGTLDKLQFNGVDGIITADLVSGKDHVRDQRKQLNRQCETIRTTML 112          
BLAST of EWM30343.1 vs. NCBI_GenBank
Match: gi|669151636|ref|XP_008611380.1| (hypothetical protein SDRG_07330 [Saprolegnia diclina VS20] >gi|530736854|gb|EQC35096.1| hypothetical protein SDRG_07330 [Saprolegnia diclina VS20])

HSP 1 Score: 75.485 bits (184), Expect = 4.766e-14
Identity = 31/62 (50.00%), Postives = 51/62 (82.26%), Query Frame = 0
Query:  137 TPRARLLEAKDQIAQMNGNLEKLQYNGVDSIITAELESGKEKAKEKRKALNQRCDSLRERIL 198
             P++ L+E+KD IAQM G+L+KLQ++GVD IITA+L +GK+  +++RK LN++C+++R  +L
Sbjct:   49 VPKSELVESKDAIAQMCGSLDKLQFHGVDGIITADLVTGKDDIRDQRKLLNKQCEAIRSTML 110          
BLAST of EWM30343.1 vs. NCBI_GenBank
Match: gi|1173946179|gb|OQR94734.1| (hypothetical protein THRCLA_22215 [Thraustotheca clavata])

HSP 1 Score: 72.4034 bits (176), Expect = 6.642e-13
Identity = 30/62 (48.39%), Postives = 50/62 (80.65%), Query Frame = 0
Query:  137 TPRARLLEAKDQIAQMNGNLEKLQYNGVDSIITAELESGKEKAKEKRKALNQRCDSLRERIL 198
              +  L+E+K+ IAQ+ G+L+KLQY+GVD IITA+L++GK+  +E+RK LN++C+S+R  ++
Sbjct:   50 VSKEELIESKETIAQLYGSLDKLQYHGVDGIITADLKTGKDHVREQRKELNRQCESIRTLMM 111          
BLAST of EWM30343.1 vs. NCBI_GenBank
Match: gi|676383245|ref|XP_009034901.1| (hypothetical protein AURANDRAFT_62608 [Aureococcus anophagefferens] >gi|323454198|gb|EGB10068.1| hypothetical protein AURANDRAFT_62608 [Aureococcus anophagefferens])

HSP 1 Score: 65.0846 bits (157), Expect = 9.651e-9
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 0
Query:  100 SPRSVSALAKLEDYAHDADALEKLLASVELCLQDYPRTPRARLLEAKDQIAQMNGNLEKLQYNGVDSIITAEL--ESGKEKAKEKRKALNQRCDSLRERI 197
            SP+S  AL KL       D LE+ +  VE  L+       A   EAK  +AQ+NG L+KLQ+ G+D+++T ++  ++ K + K KRKALNQ  +SLR RI
Sbjct:  695 SPKS-GALEKLLALRATFDDLERAVGEVEFGLRSG--NDAAWKAEAKADVAQINGRLDKLQFAGIDAVVTTDIKDDAKKSECKTKRKALNQDVESLRTRI 791          
The following BLAST results are available for this feature:
BLAST of EWM30343.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585113002|gb|EWM30343.1|7.676e-155100.00hypothetical protein Naga_100003g48 [Nannochlorops... [more]
gi|813131730|ref|XP_012197713.1|1.177e-1453.23hypothetical protein SPRG_03754 [Saprolegnia paras... [more]
gi|1173945098|gb|OQR93765.1|1.950e-1452.38hypothetical protein ACHHYP_02310 [Achlya hypogyna... [more]
gi|669151636|ref|XP_008611380.1|4.766e-1450.00hypothetical protein SDRG_07330 [Saprolegnia dicli... [more]
gi|1173946179|gb|OQR94734.1|6.642e-1348.39hypothetical protein THRCLA_22215 [Thraustotheca c... [more]
gi|676383245|ref|XP_009034901.1|9.651e-942.00hypothetical protein AURANDRAFT_62608 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna434rna434Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications