rna4337, rna4337 (mRNA) Nannochloropsis gaditana

Overview
Namerna4337
Unique Namerna4337
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1373
Alignment locationCM002463.1:325755..326411 +

Link to JBrowse

Properties
Property NameValue
ProductEndonuclease/exonuclease/phosphatase
Orig transcript idgnl|cribi|Naga_100268g8.9473.mrna
Orig protein idgnl|cribi|Naga_100268g8.9473
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:325755..326411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100268g8gene4180Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4337rna4337-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26348.1cds4327Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4337 ID=rna4337|Name=rna4337|organism=Nannochloropsis gaditana|type=mRNA|length=1373bp
TGGGAAACGCATTTTTGGGCGATACCGCAGAGTTATGAGGGCTTCCTAAT
GGGAAGAAGTGGCATGTTTGATTCGAAGGACATACTTAATTTACCTCACC
AAAAACAGTGCTCGTACAATTCGTGGGGAAGGACAAGCCCATGGAGGAAG
TAGGAGGGGAGGAGGTTGATACGAGCTCATACACCCAGTTTCTTGAGTCC
ATGTTGGCAAGTGCCACAGCTGGTGTCATCTCTCGGATTCTTTGCCACCC
TCTAGACACGTGCAAGGCCCGACTCCAGAACCCCGGAAGCGAGTTTACAA
GCACTTTACAGGTTTTTCGACAGACATTGCAGCAAGAGGGTCTGGGGGGG
CTTTACAGAGGCCTCGGGACAGTCGTCAGCATTGGTACACCTGCTTTCAT
GCTGTATCTCGCCACGTACGAGTATGCGAAAAAACTGTGCCTTTCCATAC
CTGCACTGCAGCACGACTATCAGTTTGTGGGTCATTTCAGTGCGGGCATG
GCGGCCGAGACCGCATCGTGCCTGATCTACGTCCCTGTCGACGTGGTAAA
GGAGCGGCTGCAGGTGCAGCGTCGGTTGCTCAACGGACGGGAGATTCCGG
GAAGTCTACCTATGTATAGAGGGACGTGGCATGCACTGTCGACAATCGCG
CGACAGGAGGGCTTGCGAGGTGTCTATCGGGGCTATGGAGCGACGCTCTT
ATCTTTCGGCCCCTTCTCTGCTTTCTACTTCGTCTTTTACGAGACTTTCA
AAGGGTGGGGACTCCGCCACCTGCGTCTGGACAAGGCAGAGACCCTACCT
TTCCACATGACCTTGGCGTCGGCAGCAAGCGCTGGCGCGCTCGCCTCCCT
CATCACCAACCCCATGGATCTCGTCCGTCTGAGACTACAGGTGCAACGAG
GCTCTTCACTTCCTCCATTGACTCCTGCCCTGCACTCCTCTCCTGCACCG
TTTGCTAGCTTTCCCTCATCTACCGGGGCCTCGTGGACGGGAGTGGGATC
CCCGGCTCAGGTTCACGGCGCCCCGACGGCTCCACCGTCGCACCTCCCGA
TGGTAAAGGGGGAACGAGTAGCAGACACCGCCGCGATTGTAAGGGAGCAA
TACCATAACACACTGGACGGATTGATCAAGGTATACAATCGAGAGGGTTT
CCGTGGGCTGTTCAAAGGCTCCGGTGCTAGGATCGCCTTCTTCACTCCCT
CGACGATGATTTCCATGACCGTATACGATACCCTCAAAGGGGAAATTCAC
AACTTACTTTCCTGCTAGAATAGAAAAAGAAACAATAGATCAAAAAGGGA
ACGTACAACTAATTGTGGGCTGGTCTTGTGCACGAGCTCTGTCGATTTTC
ATATTCCCAGAAAGCAATCATGA
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protein sequence of rna4337

>rna4337-protein ID=rna4337-protein|Name=rna4337|organism=Nannochloropsis gaditana|type=polypeptide|length=218bp
MIPSANRLVCPTPLAAFSVLTWNVYFAPFQWETRMKYILDEASRLQPDVI
CFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPSTLNPDALTP
YGVLTLAKRVHKPVFETVDLPTRMGRRLLLTHLGCIGEGKAMKEKNESFH
AEYSKGHKGWTVGNVHLESLNSAPLRAEQLTTISQALREAEQRGRRVILG
GDFKLSNKTGWIFLMNCP
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mRNA from alignment at CM002463.1:325755..326411+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4337 ID=rna4337|Name=rna4337|organism=Nannochloropsis gaditana|type=mRNA|length=657bp|location=Sequence derived from alignment at CM002463.1:325755..326411+ (Nannochloropsis gaditana)
ATGATCCCATCGGCCAATCGCCTTGTGTGCCCAACACCCCTGGCAGCTTT
CTCGGTGTTGACTTGGAACGTGTACTTTGCACCCTTTCAATGGGAGACTC
GCATGAAATACATATTGGACGAGGCATCGCGATTGCAACCGGACGTAATT
TGTTTCCAAGAAGTGGTGCCCGGTTTTCTCACCCTTCTTCAAAGACCAAG
TAACTCGAGATGGAGCTTTTCAGACAGCAACAGCGACACTACTTGGCTCG
AGCACAACGACTATTTACCTTCAACGTTAAACCCTGATGCGCTTACGCCA
TATGGCGTCTTAACTCTCGCAAAGAGAGTGCACAAGCCAGTTTTCGAGAC
GGTTGACCTGCCAACCCGTATGggccgtcgcctcctcctgactCATCTCG
GGTGCataggggaaggaaaagcgatgaaggaaaagaatgaaAGCTTCCAT
GCGGAGTATAGCAAAGGACACAAGGGATGGACGGTGGGCAATGTACATTT
AGAATCACTCAATTCGGCACCTCTTAGAGCCGAGCAATTGACAACGATAA
GCCAAGCTTTGCGGGAGGCAGAGCAAAGAGGACGACGTGTGATACTCGGC
GGAGACTTCAAGTTAAGCAACAAGACGGGTTGGATATTCCTTATGAACTG
CCCATGA
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Coding sequence (CDS) from alignment at CM002463.1:325755..326411+

>rna4337 ID=rna4337|Name=rna4337|organism=Nannochloropsis gaditana|type=CDS|length=657bp|location=Sequence derived from alignment at CM002463.1:325755..326411+ (Nannochloropsis gaditana)
ATGATCCCATCGGCCAATCGCCTTGTGTGCCCAACACCCCTGGCAGCTTT
CTCGGTGTTGACTTGGAACGTGTACTTTGCACCCTTTCAATGGGAGACTC
GCATGAAATACATATTGGACGAGGCATCGCGATTGCAACCGGACGTAATT
TGTTTCCAAGAAGTGGTGCCCGGTTTTCTCACCCTTCTTCAAAGACCAAG
TAACTCGAGATGGAGCTTTTCAGACAGCAACAGCGACACTACTTGGCTCG
AGCACAACGACTATTTACCTTCAACGTTAAACCCTGATGCGCTTACGCCA
TATGGCGTCTTAACTCTCGCAAAGAGAGTGCACAAGCCAGTTTTCGAGAC
GGTTGACCTGCCAACCCGTATGggccgtcgcctcctcctgactCATCTCG
GGTGCataggggaaggaaaagcgatgaaggaaaagaatgaaAGCTTCCAT
GCGGAGTATAGCAAAGGACACAAGGGATGGACGGTGGGCAATGTACATTT
AGAATCACTCAATTCGGCACCTCTTAGAGCCGAGCAATTGACAACGATAA
GCCAAGCTTTGCGGGAGGCAGAGCAAAGAGGACGACGTGTGATACTCGGC
GGAGACTTCAAGTTAAGCAACAAGACGGGTTGGATATTCCTTATGAACTG
CCCATGA
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Synonyms
Publications