EWM26348.1, cds4327 (CDS) Nannochloropsis gaditana

Overview
NameEWM26348.1
Unique Namecds4327
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:325755..326411 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26348.1
ProductEndonuclease/exonuclease/phosphatase
Orig transcript idgnl|cribi|Naga_100268g8.9473.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:325755..326411 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Homology
BLAST of EWM26348.1 vs. NCBI_GenBank
Match: gi|585108357|gb|EWM26348.1| (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 456.447 bits (1173), Expect = 1.269e-162
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
Query:    1 MIPSANRLVCPTPLAAFSVLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPSTLNPDALTPYGVLTLAKRVHKPVFETVDLPTRMGRRLLLTHLGCIGEGKAMKEKNESFHAEYSKGHKGWTVGNVHLESLNSAPLRAEQLTTISQALREAEQRGRRVILGGDFKLSNKTGWIFLMNCP 218
            MIPSANRLVCPTPLAAFSVLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPSTLNPDALTPYGVLTLAKRVHKPVFETVDLPTRMGRRLLLTHLGCIGEGKAMKEKNESFHAEYSKGHKGWTVGNVHLESLNSAPLRAEQLTTISQALREAEQRGRRVILGGDFKLSNKTGWIFLMNCP
Sbjct:    1 MIPSANRLVCPTPLAAFSVLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPSTLNPDALTPYGVLTLAKRVHKPVFETVDLPTRMGRRLLLTHLGCIGEGKAMKEKNESFHAEYSKGHKGWTVGNVHLESLNSAPLRAEQLTTISQALREAEQRGRRVILGGDFKLSNKTGWIFLMNCP 218          
BLAST of EWM26348.1 vs. NCBI_GenBank
Match: gi|1173959020|gb|OQS05301.1| (hypothetical protein THRCLA_02551 [Thraustotheca clavata])

HSP 1 Score: 93.2041 bits (230), Expect = 5.284e-19
Identity = 64/196 (32.65%), Postives = 88/196 (44.90%), Query Frame = 0
Query:   17 FSVLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPSTLNPDALTPYGVLTLAKRVHKPVFETVDLPTRMGRRLLLTH-LGCIGEGKAMKEKNESFHAEYSKGHKGWTVGNVHLESLNSAPLRAEQLTTISQALREAEQRGRRVILGGDFKLSNKTGW 211
             S++TWNV+F P     R + ++ E     PD+IC QEV   FL +L                ++ L  ++++ S   P  + PYG L LA++  +P F  V LP+RMGR L+    LG  G  K+                    VG VHLESLNS   RA QL   S+ L+         IL GDF   +   W
Sbjct:   67 LSIVTWNVWFDPIAQAQRYQALIKEIINQSPDIICLQEVTSNFLEILH---------------SSALIQSEFISS---PGPIYPYGCLILARKTLEPEFYDVPLPSRMGRTLVYCEILGPNGNDKS-------------------AVGTVHLESLNSRDTRAAQLKVCSEQLKPYSN----AILCGDFNFDDTQEW 221          
BLAST of EWM26348.1 vs. NCBI_GenBank
Match: gi|1173934664|gb|OQR85928.1| (hypothetical protein ACHHYP_11178 [Achlya hypogyna])

HSP 1 Score: 83.1889 bits (204), Expect = 2.499e-15
Identity = 63/203 (31.03%), Postives = 83/203 (40.89%), Query Frame = 0
Query:   11 PTPLAAFSVLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPS--TLNPDALTPYGVLTLAKRVHKPVFETVDLPTRMGRRLLLTHLGCIGEGKAMKEKNESFHAEYSKGHKGWTVGNVHLESLNSAPLRAEQLTTISQALREAEQRGRRVILGGDFKLSNKTGW 211
            PT      V+TWNV+F       R + +  +   L  DV+C QEV P FL                      +EH+  L +  T +P  + PYG L LA+R  +P F+ V LP+RM R L++  +                         G  VG VHLESLNS  +R EQL     AL          IL GDF   +   W
Sbjct:   71 PTDPTQLRVVTWNVWFDRLAQAQRYEALFAQVLALAADVVCLQEVTPQFLAA--------------------VEHSVLLQAVYTHSPAPVYPYGCLILARRTLEPAFDHVPLPSRMDRVLIVCRV------------------------IGGAVGTVHLESLNSPIVRDEQLRVCEAALAPFTN----AILCGDFNFDDTQAW 225          
BLAST of EWM26348.1 vs. NCBI_GenBank
Match: gi|813162723|ref|XP_012202661.1| (hypothetical protein SPRG_07919, partial [Saprolegnia parasitica CBS 223.65] >gi|641532492|gb|KDO26517.1| hypothetical protein SPRG_07919, partial [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 49/166 (29.52%), Postives = 78/166 (46.99%), Query Frame = 0
Query:   19 VLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPSTLNPDALTPYGVLTLAKRVHKPVFETVDLPTRMGRRLLLTHLGCIGEGKAMKEKNESFHAEYSKGHKG----WTVGNVHLESLNSAPLRAEQL 180
            ++TWN++F P   E R   ++ +   L PDV+C QEV P  L+ ++  +  + ++          EH        +P+ + PYG L LA+R  +P F    LP++MGR +    + C+                  +GH G      +G VHLESLN+  +R  QL
Sbjct:   76 LVTWNMWFDPRAQEQRFDALIVDVLALNPDVVCLQEVTPQVLSAIEASALLQATY----------EH--------SPEPVCPYGCLILARRALRPKFANTPLPSKMGRSM----VTCV-----------------VQGHMGTLPDVIIGTVHLESLNAPAMREAQL 202          
BLAST of EWM26348.1 vs. NCBI_GenBank
Match: gi|813219360|ref|XP_012211057.1| (hypothetical protein SPRG_16340 [Saprolegnia parasitica CBS 223.65] >gi|641523357|gb|KDO18236.1| hypothetical protein SPRG_16340 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 76.2554 bits (186), Expect = 6.325e-13
Identity = 53/205 (25.85%), Postives = 87/205 (42.44%), Query Frame = 0
Query:   11 PTPLAAFSVLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPSTLNPDALTPYGVLTLAKRVHKPVFETVDLPTRMGRRLLLTHLGCIGEGKAMKEKNESFHAEYSKGHKG----WTVGNVHLESLNSAPLRAEQLTTISQALREAEQRGRRVILGGDFKLSNKTGW 211
            P+      ++TWN++F       R   ++ +   L PDV+C QEV P  L+ ++  +  + ++          EH+        P+ ++PYG L LA+R  +P F    LP++MGR ++     C+                  +GH G      +G VHLESLN+  +R  QL   +             +L GDF   +   W
Sbjct:   36 PSDPTRLRLVTWNMWFDDRAQAQRFDALIVDVLALNPDVVCLQEVTPQVLSAIEASALLQSTY----------EHS--------PEPVSPYGCLILARRALRPKFANTPLPSKMGRSMVT----CV-----------------VQGHMGTLPDVIIGTVHLESLNAPAMREAQLRACAAVFLPHAN----AVLCGDFNFDDTQAW 197          
BLAST of EWM26348.1 vs. NCBI_GenBank
Match: gi|831785315|ref|XP_012757750.1| (hypothetical protein SAMD00019534_017050 [Acytostelium subglobosum LB1] >gi|735858382|dbj|GAM18530.1| hypothetical protein SAMD00019534_017050 [Acytostelium subglobosum LB1])

HSP 1 Score: 76.2554 bits (186), Expect = 7.650e-13
Identity = 60/199 (30.15%), Postives = 87/199 (43.72%), Query Frame = 0
Query:   19 VLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPSTLNPDALTPYGVLTLAKR----VHKPVFETVDLPTRMGRRLLLTHLGCIGEGKAMKEKNESFHAEYSKGHKGWTVGNVHLESLNS-APLRAEQLTT---ISQALREAEQRGRRVILGGDFKLSNKT 209
            ++T+NV+F  + W  R   +     +  PDV+C QEV P FL  L+              +  W++ +  +    + D + PYGV+ L++R     H   F    LPTR  R+ LLT L  +  G  M                  +V  VHLESLNS + +R +QL T   I+Q  R+A Q      L GD      T
Sbjct:   57 IVTFNVWFDSYLWRQRATELFGIVEQRMPDVVCLQEVTPMFLDYLK--------------EQRWVKEHYLMSDCGHSDTVFPYGVVILSRRDNVKFHLHSFTIYPLPTRQNRK-LLTALFQLDSGALM------------------SVSTVHLESLNSNSDMRIKQLQTIERITQERRQANQLECDSFLVGDLNFGAST 222          
BLAST of EWM26348.1 vs. NCBI_GenBank
Match: gi|551607273|ref|XP_005784956.1| (hypothetical protein EMIHUDRAFT_230880 [Emiliania huxleyi CCMP1516] >gi|485638072|gb|EOD32527.1| hypothetical protein EMIHUDRAFT_230880 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 73.9442 bits (180), Expect = 6.603e-12
Identity = 60/199 (30.15%), Postives = 82/199 (41.21%), Query Frame = 0
Query:   11 PTPLAAFSVLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPSTLNPDALTPYGVLTLAKRVHKPVFETVDLP-TRMGRRLLLTHLGCIGEGKAMKEKNESFHAEYSKGHKGWTVGNVHLESLNSAPLRAEQLTTISQALREAEQRGRRVILGGDFKLSNK 208
            P   A+  V+TWNV+F P + + RM  +  EA    PDVIC QEVVP     ++  S  R +++ S +D                  +  YG L LA+    P F  V    +RMGR LL+  L    +         +             V   HLESLN+A LRA+QL      L   +       L GDF   + 
Sbjct:   77 PPAGASLRVVTWNVWFGPVEAQARMAALFSEALGTTPDVICLQEVVPDLAASIRGCSALRRAYAISAND------------------VGSYGCLILARHELSPRFTEVPYQCSRMGRSLLVAELSPPADPAPPAACRVA-------------VATTHLESLNNARLRAKQLRIARDTLASYDS----AALVGDFNFDSS 240          
BLAST of EWM26348.1 vs. NCBI_GenBank
Match: gi|551610685|ref|XP_005786449.1| (hypothetical protein EMIHUDRAFT_111400 [Emiliania huxleyi CCMP1516] >gi|485639738|gb|EOD34020.1| hypothetical protein EMIHUDRAFT_111400 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 73.559 bits (179), Expect = 8.834e-12
Identity = 59/198 (29.80%), Postives = 82/198 (41.41%), Query Frame = 0
Query:   15 AAFSVLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPSTLNPDALTPYGVLTLAKRVHKPVFETVDLP-TRMGRRLLLTHLGCIGEGKAMKEKNESFHAEYSKGHKGWTVGNVHLESLNSAPLRAEQLTTISQALREAEQRGRRVILGGDFKLSNKTGW 211
            A+  V+TWNV+F P + + RM  +  EA    PDVIC QEVVP     ++  S  R +++ S +D                  +  YG L LA+    P F  V    +RMGR LL+  L    +         +             V   HLESLN+A LRA+QL      L   +       L GDF   +   +
Sbjct:   80 ASLRVVTWNVWFGPVEAQARMAALFSEALGTTPDVICLQEVVPDLAASIRGCSALRRAYAISAND------------------VGSYGCLILARHELSPRFTEVPYQCSRMGRSLLVAELSPPADPAPPAACRVA-------------VATTHLESLNNARLRAKQLRIARDTLASYDS----AALVGDFNFDSSQNF 242          
BLAST of EWM26348.1 vs. NCBI_GenBank
Match: gi|669155890|ref|XP_008613507.1| (hypothetical protein SDRG_09359 [Saprolegnia diclina VS20] >gi|530734579|gb|EQC32821.1| hypothetical protein SDRG_09359 [Saprolegnia diclina VS20])

HSP 1 Score: 73.1738 bits (178), Expect = 1.117e-11
Identity = 58/201 (28.86%), Postives = 86/201 (42.79%), Query Frame = 0
Query:   11 PTPLAAFSVLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPSTLNPDALTPYGVLTLAKRVHKPVFETVDLPTRMGRRLLLTHLGCIGEGKAMKEKNESFHAEYSKGHKGWTVGNVHLESLNSAPLRAEQLTTISQALREAEQRGRRVILGGDFKLSNKTGW 211
            P+      V+TWN++F       R   ++ +   L PDV+C QEV P  L+ ++  +  + ++  S                  P+ + PYG L LA+R   P F T  LP++MGR ++     C+ EG                G     VG VHLESLN+  +RA QL   + AL          +L GDF   +   W
Sbjct:   68 PSDPTRLRVVTWNMWFDHRDQALRFDALIMQVLALNPDVVCLQEVTPQVLSAIEASALLQATYDHS------------------PEPVYPYGCLVLARRTLHPAFATTPLPSKMGRSMVT----CVVEGH--------------MGALPGVVGTVHLESLNAPAVRAAQLRACAAALAPHAN----AVLCGDFNFDDTQAW 228          
BLAST of EWM26348.1 vs. NCBI_GenBank
Match: gi|470526521|ref|XP_004356772.1| (endonuclease/exonuclease/phosphatase family protein [Acanthamoeba castellanii str. Neff] >gi|440803989|gb|ELR24872.1| endonuclease/exonuclease/phosphatase family protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-11
Identity = 58/192 (30.21%), Postives = 83/192 (43.23%), Query Frame = 0
Query:   16 AFSVLTWNVYFAPFQWETRMKYILDEASRLQPDVICFQEVVPGFLTLLQRPSNSRWSFSDSNSDTTWLEHNDYLPSTLNPDALTPYGVLTLAKRVHKPVFETVDLPTRMGRRLLLTHLGCIGEGKAMKEKNESFHAEYSKGHKGWTVGNVHLESLNSAPLRAEQLTTISQALREAEQRGRRVILGGDFKLSN 207
            +  + T+NV+F       R ++IL     L  DVIC QE            +N  W   +  +D  +++ + Y  S +N      YGV+ L+ R+         LPT MGRR L+                    A Y+   +  ++G VHLESL+SA LRAEQL  IS  L  +   G    L GDF   +
Sbjct:   67 SLRLATYNVFFGQNTMRGRFRHILSMLPELDADVICVQE------------ANMEWI--EEMTDNEYVQQH-YFASDVNGRTFNGYGVVILS-RIPMADLTMWKLPTSMGRRALI--------------------ATYTINEETVSIGTVHLESLDSAQLRAEQLEKISGILASSPHAG----LMGDFNFDS 218          
The following BLAST results are available for this feature:
BLAST of EWM26348.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108357|gb|EWM26348.1|1.269e-162100.00Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
gi|1173959020|gb|OQS05301.1|5.284e-1932.65hypothetical protein THRCLA_02551 [Thraustotheca c... [more]
gi|1173934664|gb|OQR85928.1|2.499e-1531.03hypothetical protein ACHHYP_11178 [Achlya hypogyna... [more]
gi|813162723|ref|XP_012202661.1|1.276e-1329.52hypothetical protein SPRG_07919, partial [Saproleg... [more]
gi|813219360|ref|XP_012211057.1|6.325e-1325.85hypothetical protein SPRG_16340 [Saprolegnia paras... [more]
gi|831785315|ref|XP_012757750.1|7.650e-1330.15hypothetical protein SAMD00019534_017050 [Acytoste... [more]
gi|551607273|ref|XP_005784956.1|6.603e-1230.15hypothetical protein EMIHUDRAFT_230880 [Emiliania ... [more]
gi|551610685|ref|XP_005786449.1|8.834e-1229.80hypothetical protein EMIHUDRAFT_111400 [Emiliania ... [more]
gi|669155890|ref|XP_008613507.1|1.117e-1128.86hypothetical protein SDRG_09359 [Saprolegnia dicli... [more]
gi|470526521|ref|XP_004356772.1|8.850e-1130.21endonuclease/exonuclease/phosphatase family protei... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4337rna4337Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications