rna4334, rna4334 (mRNA) Nannochloropsis gaditana

Overview
Namerna4334
Unique Namerna4334
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length786
Alignment locationCM002463.1:319922..321189 -

Link to JBrowse

Properties
Property NameValue
Productkdpg and khg aldolase
Orig transcript idgnl|cribi|Naga_100268g11.9470.mrna
Orig protein idgnl|cribi|Naga_100268g11.9470
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:319922..321189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100268g11gene4177Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26345.1cds4324Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4334rna4334-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4334 ID=rna4334|Name=rna4334|organism=Nannochloropsis gaditana|type=mRNA|length=786bp
TCCCTTTTTCAGCATCGGCACCCCCCTCAACGAGCCCGCCATGCGCTCCA
CCCGTCACAAGCTCTACCCTGCCGTTGGTTACCTGTACCCCGCCGGGACC
GCCCGCCTGGCCGATGTCACCGACGAGAACAACATCGAATACGCGCTCAG
TGCCGTGCCCGAGTACCAAAAACTCTACGCCTCCCTCGCGGGCTTGAAGG
ACAAGACCTTGGAGGACGTGTTTTACGAGCAGGACGTGCGAGCCTTCGAG
ATGGCCTTCGATGGACAGATGCATTTCGCCTCCTTCTACGCCTACGTGAA
GCTGAAGGAGCAGGAGATCAGGAATCTCGTCTGGATCGCCGAGTGCATCC
TCCAAGGCCAGAAGGAAGAGATCAACAAATTCGTTCCGATCTTCTCGGAC
TCGGCGCCGTGGCGGCTGGCGGGAAAAGTGGGTCGATGAGGGAGGGAAGG
AGGGAAGGAGATGGGTGGGTGAGAGTGATGACACGAGGGAACGAGGGGGC
CCGGAGGCCTGGAAGGGGCGTGGACAGGCCATGATACAGCACTGATTTGT
GGATGAGAACGCGTGGATGTGAGGGGAGGGGCATCGGTAGACAGATCGGT
GATCAGAGGGGTCCTGCAGGATCTGGTCGAGGGGGGAAGGCCTAGAGGGA
GAAGGGGGTGGAGCCTACGCCCAGGTACAGAGTACAAGAAATGAAATCGA
ACATAAATGCAAAGGGACATCCGGGAGCCCCATCCAGGGCGACCCTCACC
TCCCTATCCCCTTCCTCGGCGAACAGCCTTTAAACC
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protein sequence of rna4334

>rna4334-protein ID=rna4334-protein|Name=rna4334|organism=Nannochloropsis gaditana|type=polypeptide|length=348bp
MWATVGGRDTMWLSRYVLFLLWSTTAGDAWGPPRSPLLQRRERMPSGLYT
SHTGLAYCSQPSIKAAKPFDDDPAWFPSPSSFSATQHAGFSPPSTLPGPA
TTTREAHALACLDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAES
PAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVV
SVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLAL
KHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAA
GAKGFALGSTLFQAGLKGGELASRARAFIQALERAPDGEMEGEAVRGG
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mRNA from alignment at CM002463.1:319922..321189-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4334 ID=rna4334|Name=rna4334|organism=Nannochloropsis gaditana|type=mRNA|length=1268bp|location=Sequence derived from alignment at CM002463.1:319922..321189- (Nannochloropsis gaditana)
TCTCTTTGCGGGAGAAGTCAGTATCAGCGCATACCCCCGGTTCTCAATCG
TTCTTGCCCTCTCACTGCGCTTTTTATTCACACGTTGCAGGCCATGTGGG
CCACGGTGGGTGGGCGTGACACCATGTGGCTGTCTCGTTACGTGCTTTTT
CTTCTTTGGAGCACGACAGCCGGTGACGCCTGGGGCCCTCCGCGGTCTCC
TCTTCTTCAACGTCGGGAGCGCATGCCTTCAGGCCTCTACACTTCTCATA
CCGGTCTCGCCTACTGTTCACAACCATCCATAAAAGCCGCCAAACCATTT
GATGACGATCCTGCATGGTTTCCTTCGCCGTCTTCATTTTCTGCCACGCA
GCATGCCGGCTTTTCTCCTCCCTCCACACTTCCCGGTCCCGCCACCACGA
CCAGAGAGGCCCACGCGCTGGCGTGCCTCGATGCTTGCCCCCTTGTTGCT
GTCTTGCGGGGTGTGACGACCAAAGATATGTACGAAACCTTGCAGACACT
ACGACAGGCAGGCCTGACCATGGTCAGCGTTCCCGCGGAGTCCCCGGCTG
GCTTTGAGGGGTTGAAGGCCCTGGCATCCCTCATCTCCTCGTCTGGCGCT
GCTTCTTCCTTTTGGCCTTCCCACGCGCCCACGTCGGGAAGTGGGTGTGA
TGAGACGTTACCACCGCTGGCATTGGGCGCGGCCACGGTCGTATCTGTGG
CACAGGTGGACCTTGCCGCCGCCGCGGGGGCTTCCTTCATAAGCTGCCCC
CACACCGACCCTGATATCATATTGCGGGCCCATAAGCACGGAATCCTATG
CCTTCCAGGCATTTTGACGCCCACGGAGGCCTTTCTGGCGCTTAAACATG
GTGCAAAGGTGTTGAAACTCTTTCCTTCCCAAGCCGTACCTCCAGGCATG
GTTGCTTCTATCGCGGCAATCTTGCCCCCGCCCACGCGCTTGCTCGTTTC
GGGAGGGGTAAAGGCAGAAGACATGCCCGCCTATCGTGCAGCAGGTGCAA
AGGGCTTTGCGCTGGGATCCACGCTATTTCAAGCCGGGCTGAAGGGAGGG
GAGCTGGCCAGCCGAGCCCGGGCCTTCATCCAGGCTTTGGAAAGGGCCCC
GGACGGGGAGATGGAGGGCGAGGCCGTCCGCGGGGGATGACCACGGGGAA
ATATAGAGGGTAGAGGGTCACGAGTGTACATAAGCTGTTCTCAGATGCGC
TGTAATGATCGTCACGCAGGTGAAGCAAAATTTAATCTTTTAAATAGCGG
TTTAAAGGCTGTTCGCCG
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Coding sequence (CDS) from alignment at CM002463.1:319922..321189-

>rna4334 ID=rna4334|Name=rna4334|organism=Nannochloropsis gaditana|type=CDS|length=1047bp|location=Sequence derived from alignment at CM002463.1:319922..321189- (Nannochloropsis gaditana)
ATGTGGGCCACGGTGGGTGGGCGTGACACCATGTGGCTGTCTCGTTACGT
GCTTTTTCTTCTTTGGAGCACGACAGCCGGTGACGCCTGGGGCCCTCCGC
GGTCTCCTCTTCTTCAACGTCGGGAGCGCATGCCTTCAGGCCTCTACACT
TCTCATACCGGTCTCGCCTACTGTTCACAACCATCCATAAAAGCCGCCAA
ACCATTTGATGACGATCCTGCATGGTTTCCTTCGCCGTCTTCATTTTCTG
CCACGCAGCATGCCGGCTTTTCTCCTCCCTCCACACTTCCCGGTCCCGCC
ACCACGACCAGAGAGGCCCACGCGCTGGCGTGCCTCGATGCTTGCCCCCT
TGTTGCTGTCTTGCGGGGTGTGACGACCAAAGATATGTACGAAACCTTGC
AGACACTACGACAGGCAGGCCTGACCATGGTCAGCGTTCCCGCGGAGTCC
CCGGCTGGCTTTGAGGGGTTGAAGGCCCTGGCATCCCTCATCTCCTCGTC
TGGCGCTGCTTCTTCCTTTTGGCCTTCCCACGCGCCCACGTCGGGAAGTG
GGTGTGATGAGACGTTACCACCGCTGGCATTGGGCGCGGCCACGGTCGTA
TCTGTGGCACAGGTGGACCTTGCCGCCGCCGCGGGGGCTTCCTTCATAAG
CTGCCCCCACACCGACCCTGATATCATATTGCGGGCCCATAAGCACGGAA
TCCTATGCCTTCCAGGCATTTTGACGCCCACGGAGGCCTTTCTGGCGCTT
AAACATGGTGCAAAGGTGTTGAAACTCTTTCCTTCCCAAGCCGTACCTCC
AGGCATGGTTGCTTCTATCGCGGCAATCTTGCCCCCGCCCACGCGCTTGC
TCGTTTCGGGAGGGGTAAAGGCAGAAGACATGCCCGCCTATCGTGCAGCA
GGTGCAAAGGGCTTTGCGCTGGGATCCACGCTATTTCAAGCCGGGCTGAA
GGGAGGGGAGCTGGCCAGCCGAGCCCGGGCCTTCATCCAGGCTTTGGAAA
GGGCCCCGGACGGGGAGATGGAGGGCGAGGCCGTCCGCGGGGGATGA
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Synonyms
Publications