EWM26345.1, cds4324 (CDS) Nannochloropsis gaditana

Overview
NameEWM26345.1
Unique Namecds4324
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:320050..321096 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26345.1
Productkdpg and khg aldolase
Orig transcript idgnl|cribi|Naga_100268g11.9470.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:320050..321096 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016829lyase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR000887Aldlse_KDPG_KHG
Homology
BLAST of EWM26345.1 vs. NCBI_GenBank
Match: gi|585108354|gb|EWM26345.1| (kdpg and khg aldolase [Nannochloropsis gaditana])

HSP 1 Score: 693.73 bits (1789), Expect = 0.000e+0
Identity = 348/348 (100.00%), Postives = 348/348 (100.00%), Query Frame = 0
Query:    1 MWATVGGRDTMWLSRYVLFLLWSTTAGDAWGPPRSPLLQRRERMPSGLYTSHTGLAYCSQPSIKAAKPFDDDPAWFPSPSSFSATQHAGFSPPSTLPGPATTTREAHALACLDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQALERAPDGEMEGEAVRGG 348
            MWATVGGRDTMWLSRYVLFLLWSTTAGDAWGPPRSPLLQRRERMPSGLYTSHTGLAYCSQPSIKAAKPFDDDPAWFPSPSSFSATQHAGFSPPSTLPGPATTTREAHALACLDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQALERAPDGEMEGEAVRGG
Sbjct:    1 MWATVGGRDTMWLSRYVLFLLWSTTAGDAWGPPRSPLLQRRERMPSGLYTSHTGLAYCSQPSIKAAKPFDDDPAWFPSPSSFSATQHAGFSPPSTLPGPATTTREAHALACLDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQALERAPDGEMEGEAVRGG 348          
BLAST of EWM26345.1 vs. NCBI_GenBank
Match: gi|950034942|ref|WP_057158680.1| (2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Massilia sp. Root351] >gi|945523854|gb|KQV79209.1| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Massilia sp. Root351])

HSP 1 Score: 149.443 bits (376), Expect = 4.932e-40
Identity = 89/222 (40.09%), Postives = 119/222 (53.60%), Query Frame = 0
Query:  110 ACLDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQA 331
            +  DA PLVA+LRG+  ++  E    L +AG  M+ VP  SP   E ++    L+S S  A +                     LGA TV+SV  V     AG   I  PH D ++I  A   G+ C+PG  TPTEAF A+  GA  +KLFP++ + P +V ++ A+LPP  RLL  GG+  E M  YRAAG  GF LG  L+Q GL   E+  RARAF++A
Sbjct:   12 SAFDALPLVAILRGLRPQEAEEVGAALYEAGFRMIEVPLNSPQPLESIE----LLSRSLPADAL--------------------LGAGTVLSVQAVQEVKNAGGQLIVMPHADTEVIRAAKAAGMFCVPGAATPTEAFAAVHAGADAVKLFPAELITPTLVRAMRAVLPPTLRLLPVGGITPEGMAPYRAAGVAGFGLGGALYQPGLSAAEVGERARAFVRA 209          
BLAST of EWM26345.1 vs. NCBI_GenBank
Match: gi|653330271|ref|WP_027493301.1| (2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Rhodanobacter sp. OR444] >gi|1016226628|gb|KZC35569.1| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Rhodanobacter sp. FW510-R12])

HSP 1 Score: 146.362 bits (368), Expect = 1.085e-38
Identity = 88/220 (40.00%), Postives = 123/220 (55.91%), Query Frame = 0
Query:  112 LDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQA 331
            L+  PLVA+LRG+   +     QTL QAG  ++ VP  SP  F+ ++ +A  +                 G  C        +GA TV++ AQVD  AAAG   +  PH D  +I  A + G+LC+PG+ TPTEAF AL  GA  LKLFP+  V P  + +  A+LP    +L  GG+ A++M  + AAGA+GF LGS+LF  G++ GEL+ R  +F QA
Sbjct:    6 LERLPLVAILRGIRPDEAVAVCQTLAQAGFRIMEVPLNSPQPFDSIRNIAQAL-----------------GKDC-------LIGAGTVMTAAQVDELAAAGGRLVVMPHADTAVIRAARQAGMLCMPGVATPTEAFSALDAGADGLKLFPADQVTPQGLKAWRAVLPRDVPVLPVGGITADNMAPWVAAGARGFGLGSSLFAPGIELGELSRRTLSFAQA 201          
BLAST of EWM26345.1 vs. NCBI_GenBank
Match: gi|1197647468|ref|WP_086640993.1| (2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Acetobacter tropicalis] >gi|1195454765|gb|OUI86219.1| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Acetobacter tropicalis])

HSP 1 Score: 145.591 bits (366), Expect = 1.280e-38
Identity = 83/220 (37.73%), Postives = 116/220 (52.73%), Query Frame = 0
Query:  112 LDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQA 331
            L  CPLVA+LRGV   ++    + L  +G  ++ +P  SP  FE ++ L                          E  P + +GA TV ++ QV+  A AG   +  PH+D  +I  A   G++C PG+ TPTE F AL HGA  LK+FP++ +PP  + +  ++ P  TRL   GG+  E M  Y  AGA GF LGS L++ G   GE+AS ARAFI A
Sbjct:    6 LARCPLVAILRGVQPNEVVAIGKALVTSGFAIIEIPLNSPEAFESIRRL------------------------TLELGPNILVGAGTVTTLEQVERLAKAGGRLVVMPHSDHRVITAAKATGMICTPGVATPTEGFAALSHGADALKMFPAETLPPSALKAWRSVFPEGTRLFPVGGITPETMAPYVIAGAAGFGLGSALYRPGASPGEVASHARAFIHA 201          
BLAST of EWM26345.1 vs. NCBI_GenBank
Match: gi|1011812930|ref|WP_062632550.1| (2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Burkholderia arationis] >gi|1019493424|emb|SAK48809.1| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Burkholderia arationis])

HSP 1 Score: 144.821 bits (364), Expect = 5.075e-38
Identity = 86/227 (37.89%), Postives = 123/227 (54.19%), Query Frame = 0
Query:  110 ACLDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLAL-GAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQALERA 335
            A   ACPL+A+LRGVT  D  +  + L +AG  +V VP  SP  F+ + A+                          + LPP A+ GA TV+  + VD   AAG   I  PH+D D++  A  HG+ C PG+ TP EAFLALK+GA VLK+FP++ + P +V +  A++     L+  GG+  ++M  +  AGA GF LGS L++ G       S A+AFI+ L+ A
Sbjct:   19 AAFSACPLIAILRGVTPADAADHGRALYEAGFRIVEVPLNSPQPFDSIAAI-------------------------RQALPPDAIVGAGTVLHFSFVDQVKAAGGELIVMPHSDADVVRAAKSHGMACAPGVATPNEAFLALKNGADVLKMFPAEQLGPEVVKAWRAVIASAVPLVPVGGIAPDNMGPFLTAGANGFGLGSALYKPGQSAAVTGSHAKAFIRGLQIA 220          
BLAST of EWM26345.1 vs. NCBI_GenBank
Match: gi|1124617487|ref|WP_074898949.1| (2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Stenotrophomonas maltophilia] >gi|1097629390|emb|SFR76892.1| 2-keto-3-deoxy-phosphogalactonate aldolase [Stenotrophomonas maltophilia])

HSP 1 Score: 144.05 bits (362), Expect = 6.904e-38
Identity = 87/225 (38.67%), Postives = 122/225 (54.22%), Query Frame = 0
Query:  110 ACLDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQALER 334
            A +   PLVA+LRG+T ++       L +AG  ++ VP  SP   + ++ LA  +                 G  C        +GA TV+S AQV     AG   +  PH D ++I  AH  G++C PG+ TPTEAF AL+ GA  LKLFP++ +PP ++ + +++LPP TRLL  GG+  E M AYR AGA GF +GS L+       ++A RARAF  A  R
Sbjct:    4 AWMQPLPLVAILRGLTPQEAPAIGAALAEAGFHILEVPLNSPQPLQSIELLAKQL-----------------GDRC-------LVGAGTVLSTAQVQDVKNAGGRLVVMPHADVEVIAAAHASGMVCTPGVATPTEAFAALRAGADALKLFPAEQLPPPVLKAWSSVLPPGTRLLPVGGITPERMAAYRQAGAAGFGIGSALYAPKTLADDVARRARAFSDAWNR 204          
BLAST of EWM26345.1 vs. NCBI_GenBank
Match: gi|764600104|ref|WP_044426216.1| (2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Skermanella aerolata] >gi|763836620|gb|KJB97067.1| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Skermanella aerolata KACC 11604])

HSP 1 Score: 143.665 bits (361), Expect = 1.048e-37
Identity = 85/220 (38.64%), Postives = 119/220 (54.09%), Query Frame = 0
Query:  115 CPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQALER 334
             PLVA+LRG+T  +  +T Q L + G  ++ VP  SP  F+ + ++  L+          P+ A               +GA TV++V QV   +  GA  +  PH D +II  A   G++ LPGI TPTEAF ALK GA  LKLFP++ + P +V ++ A+LPP  RLL  GG+  + M  Y  AG  GF LGS L+  G+   E+A RA  F+ A  R
Sbjct:   17 LPLVAILRGLTPTEAEDTAQALYERGFRLIEVPLNSPQPFDSIASIRKLL----------PADA--------------LVGAGTVMTVEQVSRLSDLGAELVVMPHADAEIIRAAKARGMVSLPGITTPTEAFSALKAGADALKLFPAELIGPKIVKAMRAVLPPDVRLLPVGGISPDTMTDYHDAGVAGFGLGSALYTPGMTVAEVAERANRFVTAWSR 212          
BLAST of EWM26345.1 vs. NCBI_GenBank
Match: gi|1120233907|ref|WP_073100986.1| (2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Candidimonas bauzanensis] >gi|1110444918|emb|SHG71911.1| 2-dehydro-3-deoxyphosphogalactonate aldolase [Candidimonas bauzanensis])

HSP 1 Score: 143.28 bits (360), Expect = 1.537e-37
Identity = 85/236 (36.02%), Postives = 126/236 (53.39%), Query Frame = 0
Query:  107 HALACLDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQALERAPDGEMEG 342
            H    LD  PL+A+LRGVT ++     + +  AG  ++ VP  SP     ++ LA                         +  P   +GA TV+S   V   A AG   I  PH+DP ++ +A + G+LC+PG+ TPTEAF AL +GA  LKL+P++ + P +V +  A++P   RLL  GG+  ++M  Y  AGA GF LGS L++AG+   ++A+ ARAF  A+ R  D  + G
Sbjct:    2 HIEPFLDKFPLIAILRGVTPQEAVAIAEEVVNAGFGILEVPLNSPQPLASIELLA-------------------------KRFPDQLVGAGTVMSPDDVRAVAQAGGQLILMPHSDPAVVRQAKQSGLLCVPGVATPTEAFAALANGADALKLYPAEQIAPAVVKAWRAVVPSRHRLLPVGGITPDNMEGYLRAGANGFGLGSALYKAGMASMDVAANARAFRLAVTRLKDAGLLG 212          
BLAST of EWM26345.1 vs. NCBI_GenBank
Match: gi|502933869|ref|WP_013168845.1| (2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Starkeya novella] >gi|296930535|gb|ADH91344.1| KDPG and KHG aldolase [Starkeya novella DSM 506])

HSP 1 Score: 142.895 bits (359), Expect = 1.548e-37
Identity = 89/227 (39.21%), Postives = 124/227 (54.63%), Query Frame = 0
Query:  110 ACLDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQALERAP 336
            A L A PL+A+LRGV   ++      L +AG  ++ VP  SP   E LK++ +L S                        P + +GA TV+  A VD     G + I  PH D ++I RA + G+ C PG  TPTEAF ALK GA  +KLFP++ +PP +V +  A+ P    L+  GGVK E MPAY  AGA+GF LGS L+Q G+ G E++  + AF +A++  P
Sbjct:    5 AQLAAFPLIAILRGVKPDEIVGVGDALVEAGFRIIEVPLNSP---EPLKSIGTLASRH----------------------PGVLVGAGTVLDPADVDRIRDVGGALIVMPHADIEVIGRAKQLGLACTPGAATPTEAFAALKAGADAVKLFPAEMLPPAIVKAWRAVFPAEVPLMPVGGVKPETMPAYWQAGARGFGLGSALYQPGMSGAEVSITSAAFARAVKELP 206          
BLAST of EWM26345.1 vs. NCBI_GenBank
Match: gi|739590837|ref|WP_037448438.1| (2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Skermanella stibiiresistens] >gi|587642768|gb|EWY41778.1| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase [Skermanella stibiiresistens SB22])

HSP 1 Score: 143.28 bits (360), Expect = 1.563e-37
Identity = 86/222 (38.74%), Postives = 118/222 (53.15%), Query Frame = 0
Query:  110 ACLDACPLVAVLRGVTTKDMYETLQTLRQAGLTMVSVPAESPAGFEGLKALASLISSSGAASSFWPSHAPTSGSGCDETLPPLALGAATVVSVAQVDLAAAAGASFISCPHTDPDIILRAHKHGILCLPGILTPTEAFLALKHGAKVLKLFPSQAVPPGMVASIAAILPPPTRLLVSGGVKAEDMPAYRAAGAKGFALGSTLFQAGLKGGELASRARAFIQA 331
            A     PLVA+LRG+T  +     Q L   G  ++ VP  SP+ F+ + A+  L+          P  A               +GA TV++  QV   A  GA  +  PH D ++I  A   G+ CLPG++TPTEAF ALK GA  LKLFP++ + P +V ++ A++PP TRLL  GGV  + M  YRAAG  GF LGS L+  G+   +L  RA  F+ A
Sbjct:   12 AAFATLPLVAILRGLTPPEAEPAAQALYDRGFRLIEVPLNSPSPFDSIAAIRRLL----------PRDA--------------IVGAGTVMTTDQVGTLAGIGADIVVMPHADTEVIRAAKAAGMACLPGVMTPTEAFAALKAGADALKLFPAELISPRIVKAMRAVMPPATRLLPVGGVTPDTMREYRAAGVAGFGLGSALYTPGMPLSQLVERADLFVAA 209          
The following BLAST results are available for this feature:
BLAST of EWM26345.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108354|gb|EWM26345.1|0.000e+0100.00kdpg and khg aldolase [Nannochloropsis gaditana][more]
gi|950034942|ref|WP_057158680.1|4.932e-4040.092-dehydro-3-deoxy-6-phosphogalactonate aldolase [M... [more]
gi|653330271|ref|WP_027493301.1|1.085e-3840.002-dehydro-3-deoxy-6-phosphogalactonate aldolase [R... [more]
gi|1197647468|ref|WP_086640993.1|1.280e-3837.732-dehydro-3-deoxy-6-phosphogalactonate aldolase [A... [more]
gi|1011812930|ref|WP_062632550.1|5.075e-3837.892-dehydro-3-deoxy-6-phosphogalactonate aldolase [B... [more]
gi|1124617487|ref|WP_074898949.1|6.904e-3838.672-dehydro-3-deoxy-6-phosphogalactonate aldolase [S... [more]
gi|764600104|ref|WP_044426216.1|1.048e-3738.642-dehydro-3-deoxy-6-phosphogalactonate aldolase [S... [more]
gi|1120233907|ref|WP_073100986.1|1.537e-3736.022-dehydro-3-deoxy-6-phosphogalactonate aldolase [C... [more]
gi|502933869|ref|WP_013168845.1|1.548e-3739.212-dehydro-3-deoxy-6-phosphogalactonate aldolase [S... [more]
gi|739590837|ref|WP_037448438.1|1.563e-3738.742-dehydro-3-deoxy-6-phosphogalactonate aldolase [S... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4334rna4334Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications