rna4331, rna4331 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4331
Unique Name	rna4331
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1620
Alignment location	CM002463.1:313013..315683 -

Link to JBrowse

Properties


Property Name	Value
Product	major facilitator superfamily
Orig transcript id	gnl\|cribi\|Naga_100031g2.2266.mrna
Orig protein id	gnl\|cribi\|Naga_100031g2.2266
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:313013..315683 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100031g2	gene4174	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26383.1	cds4321	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4331	rna4331-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:313013..315683-
coding sequence from alignment at CM002463.1:313013..315683-

mRNA sequence

>rna4331 ID=rna4331|Name=rna4331|organism=Nannochloropsis gaditana|type=mRNA|length=1620bp
ATGCTTTGGTCGTCCGCGCCGTCCCGCTTGCTGTCCACTCCAAGCTCTGC
TTTACGCCCTTTTCCCTTCTTCGCCCTTCGACGCCACTTCGCACAGGGCT
TCCTTGTCAAGGGCGAGACCCCTCACTCCTCCCCTCTCTGCCCTCTTGGC
AAACATCGCCGGTCGCATTCGTCGCGTCTCAATCGATCGTATCCGTTGCT
GAGGGTGCATTCAATCACGTCGTTTGGAGCAGGCTCAACCATGGCGACAC
GCGACGAAACAGACAGTATGGGTGTCATCCAGGTCCCTGCCGACAAGTAC
TGGGGCGCCCAGACACAGCGCTCCCTCAAATACTTCAATATCGGGCACGA
AACCATGCCTCGAGAAGTTATCCAGGCTCTGGGCATCGTCAAGAAAGCCG
CCGCCAAGACGAACGCGGAACTAGGGCTCCTGACCCCCGACATCGCCGCG
TTGATCGACAGGGCCGCCGACGAGGTGATCTCCGGGGCCCTGGACGCACA
TTTCCCCCTCCGCATCTGGCAGACGGGGTCTGGGACCCAGAGCAACATGA
ACGCCAATGAAGTCATCTCGAACCGAGCGATCGAAATGGCGGGCGGGACG
ATGGGCTCCAAGCTCCCGGTCCACGCCAACGACCACGTGAACCGTTCCCA
AAGCAGCAACGACGTTTTCCCCACCGCCATGCACGTAGCCGCCGTCCTCT
ACGTCTCGGACGCGCTCCTCCCCCAGCTACGCTCACTCCAAGGGGCCCTG
GAGGATAAAGCCCAGGCCTTTCAAGGGATGGTCAAGATCGGGCGTACCCA
CCTCCAAGACGCCGTGCCCATGACCCTGGGGCAGGAATTTGGTGGGTACG
CGGCGGCGCTGGAAGTGGACGTCCAAGGCATCGCACACGCCCTCCAGGAA
CTCTACCCCTTGGCGCAAGGCGGGACGGCCGTGGGCACGGGCCTGAACAC
GCACCCCAAATTCGCGGTCACAGTGGCCGCCGAGATCGCTCGATTGACCG
GAAAACCTTTCGTCACCGCGCCCAACAAATTCCAAGCCCTGGCCTCCCAC
GGCCCCGTGGTCCTCTTGAGCGGCGCATTGAAGGCGGCTGCGGCCGACCT
GTTCAAGATCGCGAACGACGTGCGCTTCCTCGCGTCGGGCCCCCGGTGTG
GGCTGGGGGAATTGAACCTCCCAGAGAACGAGCCAGGCTCCAGCATCATG
CCCGGGAAGGTGAACCCCACCCAGTGCGAAGCCATGACCATGGTCTGCGC
GCAGGTGATGGGGAACGACGCAGCGATCGGATTCGCGGCCTCCCAGGGGG
CCTTTGAATTGAACGTGTTCAAGCCGGTGATCATCCAGAACCTCATGCAG
TCCTGCCATCTGTTGCATGACTCGGCGCGAAATTTCCGCGAATACGCGCT
GGAAGGACTGACTGTGAACCAGGACCGGATTGACAAGTACGTGCACGAGT
CCTTGATGACTGTCACGGCCTTGAACCCGCACATCGGGTACGACAAGGCG
GCGCAGATCGCCAAGAAGGCCCACCACGAGAAGTCGACCCTGAAGGAGGC
AGCCTTGGCCCTGGGGATCCTGACAGCCGAGCAGTACGATGCCTGGGTCC
AGCCGGAGAAGATGGTGTGA

protein sequence of rna4331

>rna4331-protein ID=rna4331-protein|Name=rna4331|organism=Nannochloropsis gaditana|type=polypeptide|length=568bp
MRACIVVFSLLVLLGQLITALGITVHSMGLMLLGRLIFGLGGECLVVGQS
AFISAWFHSREVAFALGFTLSVSRFGSVLNDWGSPFIAEKANVVTAFWFG
ALLCLASTITAFLLACIDHNHRSRHHGRPDPAVLPPTAPTSLTSAGMKSP
RPDGPALTPSPTSGSHPTETEHAGLIGSLGHRGTYFETPHPSFYGPPPQH
TVRSSSSSRLAPRERAWEEDREEGPVASAPAATTSTLVQGGQFPHEALRA
RLEHLAQLDAAVDAIDEDHLWHLMGFDTMFWILAGVCALCYGAIMPFNNV
AQVYLLKYYLPIHTPPPEGVDCSFRPVLPEWEKYCAEVEHVEGLSGRLQS
VPFIIAGLLTPLIGIVIDRFGFRTLYMLLGPLLLLATHFILLVGGTSPVV
PLAGLGLAYSIIAAVIWPSVPLTVHASESSRRCGTAFGILTVFQNLSMAL
FPMAVAALSNVKHDYVTTEYFFIAVSVTGVIVAVCLMVEDEKHGAVLRKY
VVDGEETNPYHPLHPFHHGHAPPHLGGEVVPARCEREESNESKANGNEEN
RRLTAPKRPFRDYSTMSV

mRNA from alignment at CM002463.1:313013..315683-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4331 ID=rna4331|Name=rna4331|organism=Nannochloropsis gaditana|type=mRNA|length=2671bp|location=Sequence derived from alignment at CM002463.1:313013..315683- (Nannochloropsis gaditana)
CTTCGGTGAACCGATCGTATTTCCAACCTGAACAAAATGCCGGACAATCC
TTACGACGCGTGCTCACACACACCAAGACAGGTGATAAATTCGTCCTTGT
ATCCAAGCGAGTGCTGGCGGGACGGTGCATTCACATCGGGTGCGTTGGAA
GGATCCCTTTGAGGAGTATAGCAGCAGACGCACCTTCACGCTAGCCTCCC
GTGTAGCCGAAGCATCTTGCTCGACATGCACGCGGACCAAATCCTGACCA
TCAGGACTCCTCCACCGATTAATGAGGTGCGACGACAGCCAACTTCTCAT
CTCCGAGCCCTCGTGCTCATCATGGCGTCGTTTCTCACAGTTGGTAAGGG
ATTTTTCCAGCAATCACGTCTAATATCTGTGAATTTTTCTTAGCTGGAAC
TCCGAAGTGCTTTTGAAATTAACATATAAAGCGAGCAATTCCACTTAAGA
TCATCCCTAACATTGACTTTCCCGCTCCACTTGATTTTTCCATCGCGTGC
GCCTTCTCCAGGGAGCTACTACGTTTACGGTACGTGCCAGCCTGCCGTTT
TTAAGCGTTATCGAAGGAATCCATTTTGCTTGTGATTTTGCTTTGTTTTC
TTTTCGTCAAGCTCGGAATATCTTCACTGTCTTCCGTGGTGGTGGGGACC
GTTGCCAATGTTCAGCAAGTGTAAGTGACCCCCAACCCTTCCTACAGACA
CGCCCTCGTCCCTCTACGCCCAAATCCAAGAGCACTTCCTGTTCAACAAC
AACGGTTTCACCTCCCAAGCTGCCACATTCCAGCTGTACTTCAACCTCCT
CTATTCCGTATACTCGGTCCCCAACATCCTCCTGCCCTTCCTGGGAGGCC
ACCTGGTCGACACGGTGGGGATGCGTGCCTGCATTGTGGTCTTCTCCCTC
CTCGTCCTCCTCGGCCAACTCATCACCGCCCTGGGCATCACCGTCCACTC
CATGGGCCTCATGCTCCTGGGCCGCCTCATCTTCGGCCTGGGAGGAGAGT
GCCTGGTCGTGGGGCAGTCGGCCTTCATCTCCGCCTGGTTCCACAGCCGG
GAGGTTGCCTTCGCCCTGGGCTTCACCCTCTCCGTGTCCCGCTTTGGGAG
CGTCTTGAACGACTGGGGCAGCCCCTTTATCGCTGAAAAGGCGAACGTGG
TGACTGCTTTCTGGTTCGGCGCCCTCCTTTGCCTCGCCTCCACTATCACC
GCCTTCCTCCTCGCCTGCATCGACCATAATCATCGGTCTCGGCACCACGG
CCGCCCCGACCCCGCCGTCCTTCCCCCCACAGCACCCACCTCTCTCACCT
CGGCCGGCATGAAGAGCCCCCGTCCCGACGGTCCCGCCCTGACCCCATCC
CCCACCTCCGGGTCGCATCCCACGGAGACCGAGCACGCGGGCTTGATCGG
CAGCTTGGGCCACCGAGGCACCTACTTCGAGACGCCGCACCCCTCCTTCT
ACGGCCCCCCGCCCCAGCACACGGTCCGCTCTTCCTCCTCCTCGCGCCTG
GCGCCTCGGGAGAGGGCCTGGGAGGAAGACCGAGAGGAAGGACCAGTGGC
CTCAGCGCCGGCCGCCACGACCAGCACCCTCGTCCAGGGGGGCCAGTTTC
CGCACGAGGCCTTGCGGGCACGCCTGGAGCATTTGGCCCAGTTGGATGCG
GCCGTGGACGCGATCGACGAGGACCACCTCTGGCATTTGATGGGCTTCGA
CACCATGTTTTGGATTTTGGCCGGCGTCTGCGCGCTCTGTTACGGGGCGA
TCATGCCTTTTAACAACGTGGCCCAAGTCTACCTTTTGAAATACTACCTG
CCCATCCACACGCCCCCGCCTGAAGGCGTGGATTGCTCCTTCCGCCCTGT
CCTGCCCGAGTGGGAGAAATATTGCGCCGAGGTCGAGCACGTGGAGGGCC
TTTCCGGGAGGTTGCAAAGCGTGCCCTTCATCATCGCCGGTCTGCTCACG
CCCTTGATCGGCATCGTTATCGACCGCTTCGGCTTTCGGACCCTCTACAT
GCTCTTGGGCCCTCTCCTCCTCCTTGCCACCCACTTTATCCTCCTTGTCG
GGGGAACCTCCCCTGTGGTGCCCCTGGCGGGACTGGGCTTGGCCTATTCC
ATCATCGCCGCGGTCATATGGCCCTCCGTTCCTCTCACGGTACACGCAAG
CGAGAGCTCCCGGAGATGCGGCACGGCCTTTGGCATTTTGACCGTGTTCC
AAAACCTGTCCATGGCGCTGTTCCCCATGGCGGTGGCGGCGCTGTCGAAC
GTAAAGCACGACTACGTGACGACCGAATACTTTTTCATCGCCGTGTCCGT
GACCGGCGTCATCGTAGCAGTGTGTTTGATGGTGGAGGATGAGAAACACG
GGGCGGTGCTGAGAAAATACGTGGTGGACGGGGAGGAGACTAATCCTTAC
CACCCACTACACCCGTTCCACCATGGCCACGCTCCCCCGCACCTGGGAGG
GGAGGTGGTGCCTGCACGGTGTGAAAGAGAGGAGAGCAACGAGTCCAAAG
CGAACGGGAATGAGGAAAACCGACGCTTAACGGCACCTAAAAGGCCGTTT
CGGGATTATAGCACCATGAGTGTTTGAAAATGTGGGGTGTACGGAAATGT
GAAGTGAGCAGGCTTGTCGAAATGAAGCAAATTTCACTGACGAAAAGAAC
CATTCGAAAGTAGATCTATTT

Coding sequence (CDS) from alignment at CM002463.1:313013..315683-

>rna4331 ID=rna4331|Name=rna4331|organism=Nannochloropsis gaditana|type=CDS|length=1707bp|location=Sequence derived from alignment at CM002463.1:313013..315683- (Nannochloropsis gaditana)
ATGCGTGCCTGCATTGTGGTCTTCTCCCTCCTCGTCCTCCTCGGCCAACT
CATCACCGCCCTGGGCATCACCGTCCACTCCATGGGCCTCATGCTCCTGG
GCCGCCTCATCTTCGGCCTGGGAGGAGAGTGCCTGGTCGTGGGGCAGTCG
GCCTTCATCTCCGCCTGGTTCCACAGCCGGGAGGTTGCCTTCGCCCTGGG
CTTCACCCTCTCCGTGTCCCGCTTTGGGAGCGTCTTGAACGACTGGGGCA
GCCCCTTTATCGCTGAAAAGGCGAACGTGGTGACTGCTTTCTGGTTCGGC
GCCCTCCTTTGCCTCGCCTCCACTATCACCGCCTTCCTCCTCGCCTGCAT
CGACCATAATCATCGGTCTCGGCACCACGGCCGCCCCGACCCCGCCGTCC
TTCCCCCCACAGCACCCACCTCTCTCACCTCGGCCGGCATGAAGAGCCCC
CGTCCCGACGGTCCCGCCCTGACCCCATCCCCCACCTCCGGGTCGCATCC
CACGGAGACCGAGCACGCGGGCTTGATCGGCAGCTTGGGCCACCGAGGCA
CCTACTTCGAGACGCCGCACCCCTCCTTCTACGGCCCCCCGCCCCAGCAC
ACGGTCCGCTCTTCCTCCTCCTCGCGCCTGGCGCCTCGGGAGAGGGCCTG
GGAGGAAGACCGAGAGGAAGGACCAGTGGCCTCAGCGCCGGCCGCCACGA
CCAGCACCCTCGTCCAGGGGGGCCAGTTTCCGCACGAGGCCTTGCGGGCA
CGCCTGGAGCATTTGGCCCAGTTGGATGCGGCCGTGGACGCGATCGACGA
GGACCACCTCTGGCATTTGATGGGCTTCGACACCATGTTTTGGATTTTGG
CCGGCGTCTGCGCGCTCTGTTACGGGGCGATCATGCCTTTTAACAACGTG
GCCCAAGTCTACCTTTTGAAATACTACCTGCCCATCCACACGCCCCCGCC
TGAAGGCGTGGATTGCTCCTTCCGCCCTGTCCTGCCCGAGTGGGAGAAAT
ATTGCGCCGAGGTCGAGCACGTGGAGGGCCTTTCCGGGAGGTTGCAAAGC
GTGCCCTTCATCATCGCCGGTCTGCTCACGCCCTTGATCGGCATCGTTAT
CGACCGCTTCGGCTTTCGGACCCTCTACATGCTCTTGGGCCCTCTCCTCC
TCCTTGCCACCCACTTTATCCTCCTTGTCGGGGGAACCTCCCCTGTGGTG
CCCCTGGCGGGACTGGGCTTGGCCTATTCCATCATCGCCGCGGTCATATG
GCCCTCCGTTCCTCTCACGGTACACGCAAGCGAGAGCTCCCGGAGATGCG
GCACGGCCTTTGGCATTTTGACCGTGTTCCAAAACCTGTCCATGGCGCTG
TTCCCCATGGCGGTGGCGGCGCTGTCGAACGTAAAGCACGACTACGTGAC
GACCGAATACTTTTTCATCGCCGTGTCCGTGACCGGCGTCATCGTAGCAG
TGTGTTTGATGGTGGAGGATGAGAAACACGGGGCGGTGCTGAGAAAATAC
GTGGTGGACGGGGAGGAGACTAATCCTTACCACCCACTACACCCGTTCCA
CCATGGCCACGCTCCCCCGCACCTGGGAGGGGAGGTGGTGCCTGCACGGT
GTGAAAGAGAGGAGAGCAACGAGTCCAAAGCGAACGGGAATGAGGAAAAC
CGACGCTTAACGGCACCTAAAAGGCCGTTTCGGGATTATAGCACCATGAG
TGTTTGA

Synonyms

Publications