rna4328, rna4328 (mRNA) Nannochloropsis gaditana

Overview
Namerna4328
Unique Namerna4328
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length868
Alignment locationCM002463.1:307306..308399 -

Link to JBrowse

Properties
Property NameValue
Productpolyadenylate-binding protein
Orig transcript idgnl|cribi|Naga_100031g5.2270.mrna
Orig protein idgnl|cribi|Naga_100031g5.2270
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:307306..308399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100031g5gene4171Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4328rna4328-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26387.1cds4318Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4328 ID=rna4328|Name=rna4328|organism=Nannochloropsis gaditana|type=mRNA|length=868bp
ATGGAGGAGGAGGAGGAAGAACAAGAGGTAGAAGCTTATGAGACAAGCGA
GATTGTGCAGGAGGCAGGTGGGATAGGGGAGCCTGAGAAGGGGGGGTCAA
GTGAGGAGGTGGAGGCGGTGAAGGAGGAGGATGGGGAGAAAGGGAAGGGA
AGCGAGGAGGAGGGAGGGGAGGTAGGGTGCCAGAAGGCGGGTGACGCGGG
CGGCAGGGACGAGGAAGACTTGGCGCCTGCTCGAGCTGGTGATGGTGATG
AGGACGGAAGGGGAAGGTTGGACGTCGCCTCTGCTGCAGCGGATGCCAGT
GCGGCTGCGGCTGCCGCGAGTGCCGCCGCCGCCAAGGCAGCTGCCATCGC
GGCTGCAATGAGGCGGGAGATGGCCCCTGATGTGGCGCCCACGGGGAGCA
GGGATATGTTTTGATGGGGAGGGAAGTAGGAGCGGAGGGGAAGGGGGGGC
GTAGGGAGGCTAGGGAGGAGGGACCAATGGCCAAAGGGGGCTGTTGCCAT
GGAATCGAGGCGTTAGTCGAGATGGTGGCGTTATGGTACACTGGAGGAAT
ACCGATGAGGAAGCACGTGAGACGAAGGGAGGGCTCATCATACTGTACGA
TAGCCGTGGGGGAGGGGGAAGGGGAGGGGGAAGGGGAGGGGGAAGTGTCA
AGGAAAGCCCGCAGAGAGGGCAGGGGCGCGAGTCAGGGACAAGGGACGGA
CGTGGACGGGGGCCCTTGGGTGGGGCGTGGGGAGGCTCGGCACCGCCGCA
TGGAAGGTTCTGGAAGCCAAAGTACACGGCGGGGGGGCCTTGCGCCCCAC
GCCTCCCGAGAAGATCGGTCAAAGCACGGCATAGAGTGAGCATAATGGGC
GTGCCTTCACGCGTTTCC
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protein sequence of rna4328

>rna4328-protein ID=rna4328-protein|Name=rna4328|organism=Nannochloropsis gaditana|type=polypeptide|length=180bp
MKRRREEGAGARNAGKDDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLF
LPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLH
GRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGRATEGEGDR
PGNAPPEAQLCNFERGERWGRESKRWGRGG
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mRNA from alignment at CM002463.1:307306..308399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4328 ID=rna4328|Name=rna4328|organism=Nannochloropsis gaditana|type=mRNA|length=1094bp|location=Sequence derived from alignment at CM002463.1:307306..308399- (Nannochloropsis gaditana)
GGCTCAATTTAGCGCCGTATGTTTGTTTCATACCTCTAGGTCTTTCCTTT
ATGAAGCGGCGTCGAGAGGAGGGCGCAGGGGCCCGCAATGCCGGGAAAGG
TAATGATTGCTATTGTACTCGGGATTGACATGAGTGGGCGGTACTTCTGA
ATACATTTCTTTCCATTCAAACCCACCATTTCCTCAATACGATTGGAAAC
ACATAAGATGTATGCATATATTAAAATTGATGTGTGGACATTGCCACGGC
CTTTTGCTTCCATTCCCATTAATTCTAACTCCCGTTTACTTGCATGGACA
TCCTCTAAGTACCTTCATTTGTGAAGGCCTCTCCTCGTCAGGGCGGCGCT
TGATATAATTTTCGGAACACGAGACATAGCTTAATTTTCACCATGACCCT
CAACTCATTTGTCTCCAGACGATCCTGCTGAAGACCCTTTGGCGGGGCGG
CCCGGACCCAAGCTTTTCATCGGATCTCTCGCGAAGAGCGTCCAGGAAAA
AGATGTGCTCAATCTTTTCCTCCCGTACGGAAAAGTCGTGGACATTGCCT
TTTTCTGGCACATGCATGGGCCGCGCAAAGGCGAACCGAAAGGTTTCTGT
TTTGTGACGTACGCCCGAACCGAGGAGGCCACGTCTGCCATCAGGGCCTT
GGACCGACGCCGTCTCCACGGGCGCTCCATCGCGGTGCGCTATCAACGAG
ACGCAGACGACATGAACATGGACGCGCGGACACTACTTTCCAAAGCGCGT
GCAAAAAGCCTCCAGCAGAGCGGAGGGGGAGGACGGGGGGGGCGCGCGAC
CGAGGGAGAGGGAGATCGGCCCGGCAATGCCCCTCCCGAGGCCCAGCTCT
GCAACTTTGAGAGGGGTGAGCGGTGGGGGCGAGAATCAAAAAGATGGGGC
AGGGGGGGATGATGATGTGGAAGAGACGGCGTTGGAAAGCAAGATCCGTC
TTCTCAAGGCGCAATTATCGGCATCGGCTGAGGGCGGCAGTCGGGGGGGG
GAGGCGGAGTGGGGGAAGGCGGGTATAACGAGAGGGGAGACGAAGGAAAT
AAAAGAGACAAGACACATAGAAAGCCGGTCTCGTCCGTAGACGC
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Coding sequence (CDS) from alignment at CM002463.1:307306..308399-

>rna4328 ID=rna4328|Name=rna4328|organism=Nannochloropsis gaditana|type=CDS|length=1086bp|location=Sequence derived from alignment at CM002463.1:307306..308399- (Nannochloropsis gaditana)
ACGATCCTGCTGAAGACCCTTTGGCGGGGCGGCCCGGACCCAAGCTTTTC
ATCGGATCTCTCGCGAAGAGCGTCCAGGAAAAAGATGTGCTCAATCTTTT
CCTCCCGTACGGAAAAGTCGTGGACATTGCCTTTTTCTGGCACATGCATG
GGCCGCGCAAAGGCGAACCGAAAGGTTTCTGTTTTGTGACGTACGCCCGA
ACCGAGGAGGCCACGTCTGCCATCAGGGCCTTGGACCGACGCCGTCTCCA
CGGGCGCTCCATCGCGGTGCGCTATCAACGAGACGCAGACGACATGAACA
TGGACGCGCGGACACTACTTTCCAAAGCGCGTGCAAAAAGCCTCCAGCAG
AGCGGAGGGGGAGGACGGGGGGGGCGCGCGACCGAGGGAGAGGGAGATCG
GCCCGGCAATGCCCCTCCCGAGGCCCAGCTCTGCAACTTTGAGAGGGGTG
AGCGGTGGGGGCGAGAATCAAAAAGATGGGGCAGGGGGGGATGAATGAAG
CGGCGTCGAGAGGAGGGCGCAGGGGCCCGCAATGCCGGGAAAGACGATCC
TGCTGAAGACCCTTTGGCGGGGCGGCCCGGACCCAAGCTTTTCATCGGAT
CTCTCGCGAAGAGCGTCCAGGAAAAAGATGTGCTCAATCTTTTCCTCCCG
TACGGAAAAGTCGTGGACATTGCCTTTTTCTGGCACATGCATGGGCCGCG
CAAAGGCGAACCGAAAGGTTTCTGTTTTGTGACGTACGCCCGAACCGAGG
AGGCCACGTCTGCCATCAGGGCCTTGGACCGACGCCGTCTCCACGGGCGC
TCCATCGCGGTGCGCTATCAACGAGACGCAGACGACATGAACATGGACGC
GCGGACACTACTTTCCAAAGCGCGTGCAAAAAGCCTCCAGCAGAGCGGAG
GGGGAGGACGGGGGGGGCGCGCGACCGAGGGAGAGGGAGATCGGCCCGGC
AATGCCCCTCCCGAGGCCCAGCTCTGCAACTTTGAGAGGGGTGAGCGGTG
GGGGCGAGAATCAAAAAGATGGGGCAGGGGGGGATGAATGAAGCGGCGTC
GAGAGGAGGGCGCAGGGGCCCGCAATGCCGGGAAAG
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Synonyms
Publications