EWM26387.1, cds4318 (CDS) Nannochloropsis gaditana

Overview
NameEWM26387.1
Unique Namecds4318
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:308301..308349 -
Alignment locationCM002463.1:307488..307981 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26387.1
Productpolyadenylate-binding protein
Orig transcript idgnl|cribi|Naga_100031g5.2270.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:308301..308349 -
CM002463.1supercontigCM002463.1:307488..307981 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|585108397|gb|EWM26387.1| (polyadenylate-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 365.155 bits (936), Expect = 8.746e-128
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query:    1 MKRRREEGAGARNAGKDDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGRATEGEGDRPGNAPPEAQLCNFERGERWGRESKRWGRGG 180
            MKRRREEGAGARNAGKDDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGRATEGEGDRPGNAPPEAQLCNFERGERWGRESKRWGRGG
Sbjct:    1 MKRRREEGAGARNAGKDDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGRATEGEGDRPGNAPPEAQLCNFERGERWGRESKRWGRGG 180          
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|553179359|ref|XP_005852688.1| (hypothetical protein NGA_2120320, partial [Nannochloropsis gaditana CCMP526] >gi|553193477|ref|XP_005855784.1| hypothetical protein NGA_2120310, partial [Nannochloropsis gaditana CCMP526] >gi|422293275|gb|EKU20575.1| hypothetical protein NGA_2120310, partial [Nannochloropsis gaditana CCMP526] >gi|422295846|gb|EKU23145.1| hypothetical protein NGA_2120320, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 238.81 bits (608), Expect = 5.474e-78
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0
Query:   17 DDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQS 134
            DDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTY+ TEEATSAIRALDRRRLHGRSIAVRYQRDADD NMDARTLLSKARAKSLQQS
Sbjct:    1 DDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYSGTEEATSAIRALDRRRLHGRSIAVRYQRDADDTNMDARTLLSKARAKSLQQS 118          
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|299117380|emb|CBN75336.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5153 bits (236), Expect = 1.368e-20
Identity = 49/119 (41.18%), Postives = 67/119 (56.30%), Query Frame = 0
Query:   24 LAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGR 142
            + G P   LF+G+L+  V E  ++ LF P+GKVV   F +H  GPR GEP+GFCFV Y+  ++A  AIRAL  R+L+GR + VR+        MD  T  SK    +    G  G G +
Sbjct:  120 VEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKGSTATSGSFGTYGDGAK 238          
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|1001609799|gb|KXS13582.1| (RNA-binding domain-containing protein [Gonapodya prolifera JEL478])

HSP 1 Score: 90.8929 bits (224), Expect = 4.632e-19
Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 0
Query:   31 KLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGG---RGGRATEGE 147
            +L+IG++  SV E  ++ LF P+GK+  I + WH +GP +G+PKGFCF+ Y   E A +AI+++D +++ G+ + V +  D    +  A          +  Q  GGG    GGR+ EG 
Sbjct:   46 RLYIGNIDSSVAEYHIIKLFQPFGKITRIDYMWHKYGPHRGQPKGFCFLEYETHENAMNAIKSMDGKQVKGKHLVVSFSFDPVTNDSPAEGASVPRNTSNFNQHRGGGPVRSGGRSHEGH 165          
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|1021061223|emb|SAM02948.1| (hypothetical protein [Absidia glauca])

HSP 1 Score: 85.1149 bits (209), Expect = 1.260e-17
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 0
Query:   31 KLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGG 141
            +L+IG+L  +V E  V+ LF PYGK+V   F + +HGP+KG+P+G+CF+ Y + ++A +AI A++ +++ GR + V                   A  KS Q  GGG  GG
Sbjct:    5 RLYIGNLDSTVDEYAVIKLFEPYGKIVVFEFMFFLHGPKKGQPRGYCFLEYEKRQDALAAISAMNGKKIKGRPMVV------------------SAANKSTQPEGGGNSGG 97          
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|1026989664|ref|XP_016607667.1| (hypothetical protein SPPG_05013 [Spizellomyces punctatus DAOM BR117] >gi|907093785|gb|KNC99627.1| hypothetical protein SPPG_05013 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 86.2705 bits (212), Expect = 1.695e-17
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = 0
Query:   28 PGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRD 111
            P  +L++G+L  ++ E +++ LF P+GK+  I + WH HGPRKGEP+G+CFV Y R  +A  A+ A++ R + GR + V +  D
Sbjct:   46 PQTRLYVGNLPPTLTEYNLITLFAPHGKIRKIDYLWHKHGPRKGEPRGYCFVEYERRVDAVGAVAAMNGRVVGGRKLTVGFSVD 129          
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|1183497431|gb|ORZ21081.1| (hypothetical protein BCR42DRAFT_406783 [Absidia repens])

HSP 1 Score: 82.8037 bits (203), Expect = 9.499e-17
Identity = 34/76 (44.74%), Postives = 54/76 (71.05%), Query Frame = 0
Query:   31 KLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAV 106
            +++IG+L  SV E  V+ LF P+GK+V   F + +HGP+KG+P+G+CF+ Y +  EA +AI AL+ +R+ GR + V
Sbjct:    5 RIYIGNLDPSVDEYAVIKLFEPFGKIVVFDFMFFLHGPKKGQPRGYCFLEYEKKPEALTAISALNGKRIKGRPLVV 80          
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|1183448369|gb|ORY72511.1| (RNA-binding domain-containing protein [Neocallimastix californiae])

HSP 1 Score: 82.8037 bits (203), Expect = 1.305e-16
Identity = 30/78 (38.46%), Postives = 52/78 (66.67%), Query Frame = 0
Query:   31 KLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRY 108
            +L+IG+  +++ E  ++ LF  YGK+ +I + WH  GP++GEP+G+CF+ Y + E A  AI  ++++ L GR + V Y
Sbjct:   11 RLYIGNFPQTITEYSLIKLFQKYGKIKNIEYLWHKFGPKRGEPRGYCFLEYEKPESAKKAIEVMNKKELLGRILTVSY 88          
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|1178063840|gb|ORE18302.1| (hypothetical protein BCV71DRAFT_117153 [Rhizopus microsporus])

HSP 1 Score: 82.0333 bits (201), Expect = 1.786e-16
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 0
Query:   31 KLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADD 114
            +L+IG+LA  + E  +L LF P+GK+  I    H  GP+KG+PKG+CF+ Y + E+A  AI AL  +R+  +SI V +    D+
Sbjct:   19 RLYIGNLADVIDEYTILKLFEPFGKITYIDSLVHRTGPKKGQPKGYCFLEYEKKEQALKAINALHGKRIKNKSIVVSFAHTQDN 102          
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|384489729|gb|EIE80951.1| (hypothetical protein RO3G_05656 [Rhizopus delemar RA 99-880])

HSP 1 Score: 81.2629 bits (199), Expect = 3.916e-16
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = 0
Query:   28 PGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGRATE 145
            P  +L+IG+LA  + E  ++ LF P+GK+  I    H  GP+KG P+G+CF+ Y   E+A  AI +L  + + G+SI V +   A     D R      R K +QQS       +A E
Sbjct:   25 PTQRLYIGNLANVIDEYTIVKLFEPFGKITYIDSLIHWSGPKKGLPRGYCFLEYETKEQALKAINSLHGKTIKGKSIVVSFAHMASTNKDDRRNPHLLNRQKLMQQSSCTDAKIKAIE 142          
The following BLAST results are available for this feature:
BLAST of EWM26387.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108397|gb|EWM26387.1|8.746e-128100.00polyadenylate-binding protein [Nannochloropsis gad... [more]
gi|553179359|ref|XP_005852688.1|5.474e-7897.46hypothetical protein NGA_2120320, partial [Nannoch... [more]
gi|299117380|emb|CBN75336.1|1.368e-2041.18conserved unknown protein [Ectocarpus siliculosus][more]
gi|1001609799|gb|KXS13582.1|4.632e-1935.00RNA-binding domain-containing protein [Gonapodya p... [more]
gi|1021061223|emb|SAM02948.1|1.260e-1736.94hypothetical protein [Absidia glauca][more]
gi|1026989664|ref|XP_016607667.1|1.695e-1741.67hypothetical protein SPPG_05013 [Spizellomyces pun... [more]
gi|1183497431|gb|ORZ21081.1|9.499e-1744.74hypothetical protein BCR42DRAFT_406783 [Absidia re... [more]
gi|1183448369|gb|ORY72511.1|1.305e-1638.46RNA-binding domain-containing protein [Neocallimas... [more]
gi|1178063840|gb|ORE18302.1|1.786e-1641.67hypothetical protein BCV71DRAFT_117153 [Rhizopus m... [more]
gi|384489729|gb|EIE80951.1|3.916e-1635.59hypothetical protein RO3G_05656 [Rhizopus delemar ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4328rna4328Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications