EWM26387.1, cds4318 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|585108397|gb|EWM26387.1| (polyadenylate-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 365.155 bits (936), Expect = 8.746e-128 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query: 1 MKRRREEGAGARNAGKDDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGRATEGEGDRPGNAPPEAQLCNFERGERWGRESKRWGRGG 180
MKRRREEGAGARNAGKDDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGRATEGEGDRPGNAPPEAQLCNFERGERWGRESKRWGRGG
Sbjct: 1 MKRRREEGAGARNAGKDDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGRATEGEGDRPGNAPPEAQLCNFERGERWGRESKRWGRGG 180
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|553179359|ref|XP_005852688.1| (hypothetical protein NGA_2120320, partial [Nannochloropsis gaditana CCMP526] >gi|553193477|ref|XP_005855784.1| hypothetical protein NGA_2120310, partial [Nannochloropsis gaditana CCMP526] >gi|422293275|gb|EKU20575.1| hypothetical protein NGA_2120310, partial [Nannochloropsis gaditana CCMP526] >gi|422295846|gb|EKU23145.1| hypothetical protein NGA_2120320, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 238.81 bits (608), Expect = 5.474e-78 Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0
Query: 17 DDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQS 134
DDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTY+ TEEATSAIRALDRRRLHGRSIAVRYQRDADD NMDARTLLSKARAKSLQQS
Sbjct: 1 DDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYSGTEEATSAIRALDRRRLHGRSIAVRYQRDADDTNMDARTLLSKARAKSLQQS 118
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|299117380|emb|CBN75336.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 95.5153 bits (236), Expect = 1.368e-20 Identity = 49/119 (41.18%), Postives = 67/119 (56.30%), Query Frame = 0
Query: 24 LAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGR 142
+ G P LF+G+L+ V E ++ LF P+GKVV F +H GPR GEP+GFCFV Y+ ++A AIRAL R+L+GR + VR+ MD T SK + G G G +
Sbjct: 120 VEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKGSTATSGSFGTYGDGAK 238
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|1001609799|gb|KXS13582.1| (RNA-binding domain-containing protein [Gonapodya prolifera JEL478]) HSP 1 Score: 90.8929 bits (224), Expect = 4.632e-19 Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 0
Query: 31 KLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGG---RGGRATEGE 147
+L+IG++ SV E ++ LF P+GK+ I + WH +GP +G+PKGFCF+ Y E A +AI+++D +++ G+ + V + D + A + Q GGG GGR+ EG
Sbjct: 46 RLYIGNIDSSVAEYHIIKLFQPFGKITRIDYMWHKYGPHRGQPKGFCFLEYETHENAMNAIKSMDGKQVKGKHLVVSFSFDPVTNDSPAEGASVPRNTSNFNQHRGGGPVRSGGRSHEGH 165
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|1021061223|emb|SAM02948.1| (hypothetical protein [Absidia glauca]) HSP 1 Score: 85.1149 bits (209), Expect = 1.260e-17 Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 0
Query: 31 KLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGG 141
+L+IG+L +V E V+ LF PYGK+V F + +HGP+KG+P+G+CF+ Y + ++A +AI A++ +++ GR + V A KS Q GGG GG
Sbjct: 5 RLYIGNLDSTVDEYAVIKLFEPYGKIVVFEFMFFLHGPKKGQPRGYCFLEYEKRQDALAAISAMNGKKIKGRPMVV------------------SAANKSTQPEGGGNSGG 97
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|1026989664|ref|XP_016607667.1| (hypothetical protein SPPG_05013 [Spizellomyces punctatus DAOM BR117] >gi|907093785|gb|KNC99627.1| hypothetical protein SPPG_05013 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 86.2705 bits (212), Expect = 1.695e-17 Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = 0
Query: 28 PGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRD 111
P +L++G+L ++ E +++ LF P+GK+ I + WH HGPRKGEP+G+CFV Y R +A A+ A++ R + GR + V + D
Sbjct: 46 PQTRLYVGNLPPTLTEYNLITLFAPHGKIRKIDYLWHKHGPRKGEPRGYCFVEYERRVDAVGAVAAMNGRVVGGRKLTVGFSVD 129
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|1183497431|gb|ORZ21081.1| (hypothetical protein BCR42DRAFT_406783 [Absidia repens]) HSP 1 Score: 82.8037 bits (203), Expect = 9.499e-17 Identity = 34/76 (44.74%), Postives = 54/76 (71.05%), Query Frame = 0
Query: 31 KLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAV 106
+++IG+L SV E V+ LF P+GK+V F + +HGP+KG+P+G+CF+ Y + EA +AI AL+ +R+ GR + V
Sbjct: 5 RIYIGNLDPSVDEYAVIKLFEPFGKIVVFDFMFFLHGPKKGQPRGYCFLEYEKKPEALTAISALNGKRIKGRPLVV 80
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|1183448369|gb|ORY72511.1| (RNA-binding domain-containing protein [Neocallimastix californiae]) HSP 1 Score: 82.8037 bits (203), Expect = 1.305e-16 Identity = 30/78 (38.46%), Postives = 52/78 (66.67%), Query Frame = 0
Query: 31 KLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRY 108
+L+IG+ +++ E ++ LF YGK+ +I + WH GP++GEP+G+CF+ Y + E A AI ++++ L GR + V Y
Sbjct: 11 RLYIGNFPQTITEYSLIKLFQKYGKIKNIEYLWHKFGPKRGEPRGYCFLEYEKPESAKKAIEVMNKKELLGRILTVSY 88
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|1178063840|gb|ORE18302.1| (hypothetical protein BCV71DRAFT_117153 [Rhizopus microsporus]) HSP 1 Score: 82.0333 bits (201), Expect = 1.786e-16 Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 0
Query: 31 KLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADD 114
+L+IG+LA + E +L LF P+GK+ I H GP+KG+PKG+CF+ Y + E+A AI AL +R+ +SI V + D+
Sbjct: 19 RLYIGNLADVIDEYTILKLFEPFGKITYIDSLVHRTGPKKGQPKGYCFLEYEKKEQALKAINALHGKRIKNKSIVVSFAHTQDN 102
BLAST of EWM26387.1 vs. NCBI_GenBank
Match: gi|384489729|gb|EIE80951.1| (hypothetical protein RO3G_05656 [Rhizopus delemar RA 99-880]) HSP 1 Score: 81.2629 bits (199), Expect = 3.916e-16 Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = 0
Query: 28 PGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGRATE 145
P +L+IG+LA + E ++ LF P+GK+ I H GP+KG P+G+CF+ Y E+A AI +L + + G+SI V + A D R R K +QQS +A E
Sbjct: 25 PTQRLYIGNLANVIDEYTIVKLFEPFGKITYIDSLIHWSGPKKGLPRGYCFLEYETKEQALKAINSLHGKTIKGKSIVVSFAHMASTNKDDRRNPHLLNRQKLMQQSSCTDAKIKAIE 142 The following BLAST results are available for this feature:
BLAST of EWM26387.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|