rna4326, rna4326 (mRNA) Nannochloropsis gaditana

Overview
Namerna4326
Unique Namerna4326
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1945
Alignment locationCM002463.1:305087..306009 +

Link to JBrowse

Properties
Property NameValue
Productubiquinone menaquinone biosynthesis methyltransferase
Orig transcript idgnl|cribi|Naga_100031g7.2255.mrna
Orig protein idgnl|cribi|Naga_100031g7.2255
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:305087..306009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100031g7gene4169Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4326rna4326-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26372.1cds4316Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4326 ID=rna4326|Name=rna4326|organism=Nannochloropsis gaditana|type=mRNA|length=1945bp
ACAGGTACCTCTCACATAGTCCTTATTCGGGTGAAAATGCTTTGCTTGGA
GAGGAGGTGTGGAGGAAAGGAGCTTTAGAACATTGGCGGGCATACCAAGT
AGGGGGGGAGGAACAGCAGCAGCAGCCCTGGAAGTGATTTCTCTTCCTGA
GCCCACGCGACGTGCTGTTGGTTCCTCCTGATCTGTGCAACTGTGTTCCT
GATATTTTGCGAGTTAATTGTAAAATAATTCGGGGAAATTTTGTCTAATT
GTGCGGCAGTGGCTTCAAACAAACTACATTCCGGAGCAGCCAAGGCCCGG
ACGCCAGTTGGGCCACGCCTGAGGGAGGAAGGCCCCCGCCTTTATTCCCG
CTCTCCTTCCGCTCAGGGGTGCTTCATAGCTATCTGACGTTTTTAAAAGG
GGCAGGCTTTCGGGTGGGGGTTGGTGGAGCGGCGTCAAAATTCAAAACGC
TGGAACACAGCTTGACGGATTGTTTGACGACTCATCATCAGCTGGAGCAT
GGGTCAATTATGTACCCGCCTGGTCGAGCTGGTCTCCCGTCGGACCGAAA
AACGTGTGGTTCTCCTGGGACTGGACAATGCCGGTAAAACTACCTGCGTG
TACCGGCTTCTGCTCGGGAAAAAAGTGGACACGGTGCCCACGGTGGGCTT
CAACAGCGAAGAGGTGCGCTACCAACGTTGCAATTTCATTATGTGGGACA
TAGGGGGCCAGGCTAAAATTCGAAAGCTCTGGAAGCACTACGTGGAATCG
GCGGACGCCTTGATCTTCGTGGTGGACGCGCAAGATCGAGCGCGCCTGGC
GGAAGCCCGGTCGGCCTTTAAACGGATGCTTCGCTACAAGACTTTGAAGA
ACACCGTCCTGCTCATCCTGGCCAACAAGATGGATTACGAGCATGCCATG
TCCTCGGCCGAGATCGTCCAGGGTTTGGAAGTGAAAAGAGTGGTGGGGAG
GCGTCCCTGGTGGGTACAAGAGACCTGCGCCATCTCGGGGCAGGGGCTGA
GGGAGGGGATGGACTGGTTGCTCCAAACCTTGGAAGGGCACAGCACAGAC
AGCCGAGGTGGTGGGAGCGAGGAGGGCGCGGGGGAGGTGAAAAAGGAGGA
GGAGGAAGCAGACATAGGTCAAGACGGGGTGCCAAACTCCTCCCTCCCTG
CGGTCCCGACCGGATGCGTATGCTGCGGGTGCCGGAGGCAGCGGAGGGGG
CCCAACGGGGGCTCGTCATCGGAGGATTTGAGGGGGAGAAGGAGGAGAAG
GGGCTGGCGCCAGGGGGAGGGGGAGGAGGGCGGGGAGGCTGGGAAGGAGG
AGGCGGCGGAGCCAGGGCTCAGCATAGGGAGGGGAGTGGGGAGGAAGACG
GCAGCCAACCGGGCCTGCCAGGGGCTCTGTGCTGGGGGACGCAGTGTTTT
GCACGCAAGCAGGGGTATCGAAATGGGAGGGGCCGCGGGAGGGAGAAAAG
AAGGGGGGGAAGAGAGGGAGGAGGTGAAGACCTATCTCGATCGGGAGCAT
GGCGCGGACTTCGGCAGAGAGACATGCTGCGGTTAGGGAGCAGTGGTGTC
TGTGGAAGCGTCACTCTCGGCGCATGGTTCTACCTAATATGGCGTCCTTG
GTAAACGATTGGGGCTGCCGGTAAGGCTTTTTTTGAATTTTGGCGATAGA
TTCTCTTGGATGATGGGCGGGATGGAAATGGCGAATTTGTCGATAAATGT
GAAGACTTATAGTTCCCATTATGAGGGCACGGGGGCTTGTAGGGTGGCAG
GACCTTGTGGGGGAATGGGCGGAGAAGACAGTGCGAAAATAGCACCAAAA
TTGAAAACAACGACCCACTAAGACGGCATCGAGACAATAGCAGGTCACTT
CATTGAGATAATGTGAGCAAGACTTCCAGCGGGAAATCTGGTCGTGTGAG
GCGCCGACCTAAGCTTGATGGACTGTAGCAATATCAGGCGCTGCC
back to top

protein sequence of rna4326

>rna4326-protein ID=rna4326-protein|Name=rna4326|organism=Nannochloropsis gaditana|type=polypeptide|length=242bp
MNKSTAALPKAWRFLNYIYLLMGLLALAGGIWVAFEVQLKMTGGEGSSER
EARAPLGSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKV
LDLATGTADVAVLAAEAFLARNWTGGQVWGIDPSAGMLRIGEEKIAAKGL
GSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKK
SPASRVGILEFQLPQAGPLRWVAEFMVRRGARADAEKGRRGG
back to top

mRNA from alignment at CM002463.1:305087..306009+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4326 ID=rna4326|Name=rna4326|organism=Nannochloropsis gaditana|type=mRNA|length=923bp|location=Sequence derived from alignment at CM002463.1:305087..306009+ (Nannochloropsis gaditana)
ATGAACAAAAGTACCGCAGCACTTCCGAAGGCATGGAGATTTCTAAATTA
TATTTATTTGCTGATGGGGCTTCTGGCATTGGCAGGAGGCATATGGGTGG
CTTTTGAAGTCCAACTGAAGatgacgggaggggagggctcgagcgagagg
gaggcaagggcacCTCTCGGATCAGGCCTCATGTTCGACGCTGTTGCCAA
ACACTACGATAGAATGAATAAATTAATGAGCTTAGGACTGGATCAAAGCT
GGCGTTGGTTTTTGATCGAAGGGTTGGAGTtgcaggaaggagacaaggtG
TTGGACCTGGCCACGGGCACCGCCGACGTGGCGGTCTTGGCCGCCGAAGC
ATTCCTCGCACGGAACTGGACGGGGGGACAGGTGTGGGGCATCGATCCAT
CAGCGGGGATGCTCCGCATTGGTGAGGAGAAAATTGCGGCGAAAGGGCTG
GGTTCGGTGGTGAGATTGACCTTGGGCGATGCCCAAGCCATGGGGGAGGT
GGCCTCCGATTCCGTGGACAAAATTAGCATGTCCTTTGGGATCCGAAACG
TGGAGGACCGCCTGTCTGCCTTGAAAGAGATGGCCCGAGTGCTGAAGAag
tcccccgcctccagggTTGGCATCTTGGAGTTCCAGTTGCCCCAGGCAGG
GCCGTTGCGGTGGGTCGCGGAATTTATGGTCCGGTACGGTGCCCCTTTTC
TCGGCGCTTTTTTCACGGGCCTCAAGGAGGAATACGTGCACTTGCGACGG
AGCATTTTGGAGTTCCCCAGCCCCGAGGAGTTCGTGGcgctgatggagga
ggggggcttggtggtggaggaagtgcggGAGACTGGCTTTggcgccgtct
ccctctttttggcGCGGCcgggaaaaggcgaggggcgCGTGCTGACGCCG
AAAAAGGTCGGCGAGGAGGTTGA
back to top

Coding sequence (CDS) from alignment at CM002463.1:305087..306009+

>rna4326 ID=rna4326|Name=rna4326|organism=Nannochloropsis gaditana|type=CDS|length=1458bp|location=Sequence derived from alignment at CM002463.1:305087..306009+ (Nannochloropsis gaditana)
ATGAACAAAAGTACCGCAGCACTTCCGAAGGCATGGAGATTTCTAAATTA
TATTTATTTGCTGATGGGGCTTCTGGCATTGGCAGGAGGCATATGGGTGG
CTTTTGAAGTCCAACTGAAGatgacgggaggggagggctcgagcgagagg
gaggcaagggcacCTCTCGGATCAGGCCTCATGTTCGACGCTGTTGCCAA
ACACTACGATAGAATGAATAAATTAATGAGCTTAGGACTGGATCAAAGCT
GGCGTTGGTTTTTGATCGAAGGGTTGGAGTtgcaggaaggagacaaggtG
TTGGACCTGGCCACGGGCACCGCCGACGTGGCGGTCTTGGCCGCCGAAGC
ATTCCTCGCACGGAACTGGACGGGGGGACAGGTGTGGGGCATCGATCCAT
CAGCGGGGATGCTCCGCATTGGTGAGGAGAAAATTGCGGCGAAAGGGCTG
GGTTCGGTGGTGAGATTGACCTTGGGCGATGCCCAAGCCATGGGGGAGGT
GGCCTCCGATTCCGTGGACAAAATTAGCATGTCCTTTGGGATCCGAAACG
TGGAGGACCGCCTGTCTGCCTTGAAAGAGATGGCCCGAGTGCTGAAGAag
tcccccgcctccagggTTGGCATCTTGGAGTTCCAGTTGCCCCAGGCAGG
GCCGTTGCGGTGGGTCGCGGAATTTATGGTCCGgcgaggggcgCGTGCTG
ACGCCGAAAAAGGTCGGCGAGGAGGTTGAATGAACAAAAGTACCGCAGCA
CTTCCGAAGGCATGGAGATTTCTAAATTATATTTATTTGCTGATGGGGCT
TCTGGCATTGGCAGGAGGCATATGGGTGGCTTTTGAAGTCCAACTGAAGa
tgacgggaggggagggctcgagcgagagggaggcaagggcacCTCTCGGA
TCAGGCCTCATGTTCGACGCTGTTGCCAAACACTACGATAGAATGAATAA
ATTAATGAGCTTAGGACTGGATCAAAGCTGGCGTTGGTTTTTGATCGAAG
GGTTGGAGTtgcaggaaggagacaaggtGTTGGACCTGGCCACGGGCACC
GCCGACGTGGCGGTCTTGGCCGCCGAAGCATTCCTCGCACGGAACTGGAC
GGGGGGACAGGTGTGGGGCATCGATCCATCAGCGGGGATGCTCCGCATTG
GTGAGGAGAAAATTGCGGCGAAAGGGCTGGGTTCGGTGGTGAGATTGACC
TTGGGCGATGCCCAAGCCATGGGGGAGGTGGCCTCCGATTCCGTGGACAA
AATTAGCATGTCCTTTGGGATCCGAAACGTGGAGGACCGCCTGTCTGCCT
TGAAAGAGATGGCCCGAGTGCTGAAGAagtcccccgcctccagggTTGGC
ATCTTGGAGTTCCAGTTGCCCCAGGCAGGGCCGTTGCGGTGGGTCGCGGA
ATTTATGGTCCGgcgaggggcgCGTGCTGACGCCGAAAAAGGTCGGCGAG
GAGGTTGA
back to top
Synonyms
Publications