EWM26372.1, cds4316 (CDS) Nannochloropsis gaditana

Overview
NameEWM26372.1
Unique Namecds4316
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:305087..305769 +
Alignment locationCM002463.1:305964..306009 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26372.1
Productubiquinone menaquinone biosynthesis methyltransferase
Orig transcript idgnl|cribi|Naga_100031g7.2255.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:305087..305769 +
CM002463.1supercontigCM002463.1:305964..306009 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR023576UbiE/COQ5_MeTrFase_CS
IPR004033UbiE/COQ5_MeTrFase
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM26372.1 vs. NCBI_GenBank
Match: gi|585108382|gb|EWM26372.1| (ubiquinone menaquinone biosynthesis methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 479.559 bits (1233), Expect = 5.494e-171
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
Query:    1 MNKSTAALPKAWRFLNYIYLLMGLLALAGGIWVAFEVQLKMTGGEGSSEREARAPLGSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGGQVWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKKSPASRVGILEFQLPQAGPLRWVAEFMVRRGARADAEKGRRGG 242
            MNKSTAALPKAWRFLNYIYLLMGLLALAGGIWVAFEVQLKMTGGEGSSEREARAPLGSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGGQVWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKKSPASRVGILEFQLPQAGPLRWVAEFMVRRGARADAEKGRRGG
Sbjct:    1 MNKSTAALPKAWRFLNYIYLLMGLLALAGGIWVAFEVQLKMTGGEGSSEREARAPLGSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGGQVWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKKSPASRVGILEFQLPQAGPLRWVAEFMVRRGARADAEKGRRGG 242          
BLAST of EWM26372.1 vs. NCBI_GenBank
Match: gi|294942599|ref|XP_002783602.1| (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE, putative [Perkinsus marinus ATCC 50983] >gi|239896104|gb|EER15398.1| Ubiquinone/menaquinone biosynthesis methyltransferase ubiE, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 173.326 bits (438), Expect = 1.150e-49
Identity = 93/195 (47.69%), Postives = 122/195 (62.56%), Query Frame = 0
Query:   34 AFEVQLKMTGGEGSSEREARAPLGSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGGQVWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKKSPASRVGILEFQLPQAGPLRWVAEFMVR 228
             F+  +  +        E +   GSG MFD +A++YD  N+ MSLGLDQ WR  ++E L L+  DK+LDLATGT DVA++AA      N     V GIDPS GM+ +G++K+ A+ L   V L +GDAQ +  V   S+DKI+MSFGIRNV DR  AL+EM+RVL  SP S VGILEF  P    L  +A++ VR
Sbjct:   32 TFDSIITTSVASSHDPNEEQQRFGSGKMFDHIAEYYDMGNRAMSLGLDQGWRRAMLEALSLRSDDKLLDLATGTGDVAIMAAHMANLSN-----VRGIDPSVGMVSVGKDKVIAEDLDKRVFLEVGDAQNLTTVPDQSIDKITMSFGIRNVPDRPRALREMSRVLVSSPDSLVGILEFTAPTGTILAPIAKYFVR 221          
BLAST of EWM26372.1 vs. NCBI_GenBank
Match: gi|836722000|ref|WP_047854064.1| (class I SAM-dependent methyltransferase [Archangium gephyra] >gi|827418903|gb|AKI98798.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Archangium gephyra])

HSP 1 Score: 156.377 bits (394), Expect = 1.363e-43
Identity = 87/172 (50.58%), Postives = 111/172 (64.53%), Query Frame = 0
Query:   57 GSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGGQVWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKKSPASRVGILEFQLPQAGPLRWVAEFMVR 228
            GSG MFD +A  YD +N+LMS G+DQ WR   ++ LELQ G +VLDLATGTAD+A+      L R+    +V G+DPS GML +G  K+AAKGL  V  L +GDAQ +      S D + M+FGIRNV DR  AL+EMARV+K  P  R+ ILE   P+ G L  +A F +R
Sbjct:   22 GSGAMFDMIAPRYDLLNRLMSFGVDQRWRNKTVDALELQSGARVLDLATGTADLAL----KVLQRH-PDTKVVGVDPSEGMLEVGRRKVAAKGLTRVCELKVGDAQQL-PFEDKSFDGLCMAFGIRNVPDRARALREMARVVK--PGGRIAILELSEPRKGLLGPLARFQIR 185          
BLAST of EWM26372.1 vs. NCBI_GenBank
Match: gi|502593212|ref|WP_012830784.1| (class I SAM-dependent methyltransferase [Haliangium ochraceum] >gi|262082223|gb|ACY18192.1| ubiquinone/menaquinone biosynthesis methyltransferase [Haliangium ochraceum DSM 14365])

HSP 1 Score: 155.606 bits (392), Expect = 6.480e-43
Identity = 88/180 (48.89%), Postives = 116/180 (64.44%), Query Frame = 0
Query:   51 EARAP-LGSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGGQVWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKKSPASRVGILEFQLPQAGPLRWVAEFMVRR 229
            +A+AP  GSG MFD +A  YD +N++MS G+D+ WR   +E LEL  G +VLDLATGTADVA+      +AR+    +V G+DPSAGML IG EKIA++ L   V L LGDAQ + +   DS D + ++FGIRNV DR  AL EMAR+ +  P  RV ILE   P+ G +  +A F +  
Sbjct:   21 DAQAPRPGSGDMFDGIAPRYDLLNRVMSFGMDRRWRRKTVEALELGPGARVLDLATGTADVAM-----SIARSHPECEVVGVDPSAGMLDIGREKIASEQLEDRVSLALGDAQEL-DYPDDSFDGVCIAFGIRNVPDRARALAEMARITR--PGGRVAILELSEPRRGLIAPLARFHIHH 192          
BLAST of EWM26372.1 vs. NCBI_GenBank
Match: gi|873239053|emb|CEL94684.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 154.836 bits (390), Expect = 2.123e-42
Identity = 90/199 (45.23%), Postives = 129/199 (64.82%), Query Frame = 0
Query:   40 KMTGGEGSSEREARAPLGSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLAR-NWT---GGQVWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVE--DRLSALKEMARVLKKSPASRVGILEFQLPQ-AGPLRWVAEFMVRRGA 231
            ++  G+GS + ++ A +GSG MFDAVA  YD +N++MS+G+D++WR  L++ L+L+  D+VLD+ATGTADVA+L  +   +R N T   G  V G+DPSA ML +G +K++   L   V L LGDA A+ +    S DKIS+SFGIRNV    R++AL+E  RV+KK    R+ ILE   P   G L  +A + +R  A
Sbjct:   34 RLNDGDGSKKGQSEAAMGSGRMFDAVAPRYDFVNRVMSMGMDRAWRRRLVQTLQLEPSDRVLDVATGTADVAILVGQQMKSRENDTKRDGPCVIGVDPSANMLAVGRDKVSRAFLNDTVSLELGDALAL-QYEDSSFDKISISFGIRNVPAASRITALEEFHRVIKKEQGKRLAILEISEPAGTGLLARLARWFIRLNA 231          
BLAST of EWM26372.1 vs. NCBI_GenBank
Match: gi|503141535|ref|WP_013376196.1| (bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [Stigmatella aurantiaca] >gi|309394676|gb|ADO72135.1| Ubiquinone/menaquinone biosynthesis methyltransferase [Stigmatella aurantiaca DW4/3-1])

HSP 1 Score: 152.91 bits (385), Expect = 3.357e-42
Identity = 82/173 (47.40%), Postives = 112/173 (64.74%), Query Frame = 0
Query:   57 GSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGGQVWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKKSPASRVGILEFQLPQAGPLRWVAEFMVRR 229
            GSG MFD +A  YD +N++MSLG+DQSWR   ++ LEL+ G +VLDLATGT D+A+      + ++   G V G+DPS GM+ IG +K+A +GL +   L LGDAQ++      S D I M+FGIRNV DR  AL+EMARV +  P  R+ ILE   P+ G L  +  F +R+
Sbjct:   17 GSGQMFDQIAPRYDLLNRMMSLGIDQSWRRKTVKALELKPGYRVLDLATGTGDLALK-----VLKHHPEGTVVGLDPSEGMMEIGRKKVAEEGLSAKCELKLGDAQSL-PFEDQSFDGICMAFGIRNVPDRPRALREMARVTR--PGGRIAILELSEPRNGLLSPLLRFQIRK 181          
BLAST of EWM26372.1 vs. NCBI_GenBank
Match: gi|115362449|gb|EAU61722.1| (ubiquinone/menaquinone biosynthesis methyltransferase UbiE [Stigmatella aurantiaca DW4/3-1])

HSP 1 Score: 152.525 bits (384), Expect = 6.238e-42
Identity = 82/173 (47.40%), Postives = 112/173 (64.74%), Query Frame = 0
Query:   57 GSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGGQVWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKKSPASRVGILEFQLPQAGPLRWVAEFMVRR 229
            GSG MFD +A  YD +N++MSLG+DQSWR   ++ LEL+ G +VLDLATGT D+A+      + ++   G V G+DPS GM+ IG +K+A +GL +   L LGDAQ++      S D I M+FGIRNV DR  AL+EMARV +  P  R+ ILE   P+ G L  +  F +R+
Sbjct:   33 GSGQMFDQIAPRYDLLNRMMSLGIDQSWRRKTVKALELKPGYRVLDLATGTGDLALK-----VLKHHPEGTVVGLDPSEGMMEIGRKKVAEEGLSAKCELKLGDAQSL-PFEDQSFDGICMAFGIRNVPDRPRALREMARVTR--PGGRIAILELSEPRNGLLSPLLRFQIRK 197          
BLAST of EWM26372.1 vs. NCBI_GenBank
Match: gi|1180455611|ref|WP_083968208.1| (class I SAM-dependent methyltransferase [Hyalangium minutum] >gi|670623162|gb|KFE69621.1| hypothetical protein DB31_6596 [Hyalangium minutum])

HSP 1 Score: 150.984 bits (380), Expect = 1.807e-41
Identity = 85/172 (49.42%), Postives = 109/172 (63.37%), Query Frame = 0
Query:   57 GSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGGQVWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKKSPASRVGILEFQLPQAGPLRWVAEFMVR 228
            GSG MFD +A  YD +N+LMS G+DQ WR   ++ LEL+ G +VLDLATGTAD+A+      L R+     V G+DPS  ML IG +K+AA GL S   L +GDAQ +      S D + M+FGIRNV DR  AL+EMARV+K  P  R+ ILE   P+ G L  +A F +R
Sbjct:   22 GSGAMFDKIAPRYDLLNRLMSFGIDQRWRNKTVDALELKPGGRVLDLATGTADLAL----KVLHRH-PDTTVVGVDPSVKMLEIGRQKVAAGGLASKCELQVGDAQVL-PFPDRSFDGLCMAFGIRNVPDRSKALREMARVVK--PDGRIAILELSEPKGGILGPLARFQIR 185          
BLAST of EWM26372.1 vs. NCBI_GenBank
Match: gi|1124742784|ref|WP_075005416.1| (bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [Stigmatella aurantiaca])

HSP 1 Score: 150.599 bits (379), Expect = 2.558e-41
Identity = 82/172 (47.67%), Postives = 109/172 (63.37%), Query Frame = 0
Query:   57 GSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGGQVWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKKSPASRVGILEFQLPQAGPLRWVAEFMVR 228
            GSG MFD +A  YD +N++MSLG+DQ WR   ++ L L+ G +VLDLATGT D+A+      + +    G V G+DPS GM+ IG +K+AA+GL +   L  GDAQA+     +S D I M+FGIRNV DR  AL+EMARV +  P  R+ ILE   PQ G L  +  F +R
Sbjct:   17 GSGRMFDQIAPRYDLLNRMMSLGIDQRWRRKTVKALALKPGYRVLDLATGTGDLALK-----VLKYHPDGTVVGLDPSEGMMEIGRQKVAAQGLSAQCELKRGDAQAL-PFEDNSFDGICMAFGIRNVPDRPKALREMARVTR--PGGRIAILELSEPQGGLLGPLLRFQIR 180          
BLAST of EWM26372.1 vs. NCBI_GenBank
Match: gi|501192624|ref|WP_012235642.1| (class I SAM-dependent methyltransferase [Sorangium cellulosum] >gi|161161865|emb|CAN93170.1| ubiquinone/menaquinone biosynthesis methyltransferase [Sorangium cellulosum So ce56])

HSP 1 Score: 150.214 bits (378), Expect = 3.847e-41
Identity = 83/173 (47.98%), Postives = 110/173 (63.58%), Query Frame = 0
Query:   56 LGSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGGQVWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKISMSFGIRNVEDRLSALKEMARVLKKSPASRVGILEFQLPQAGPLRWVAEFMVR 228
             G+G MFD +A+ YD +N+++SLGLDQ WR   +  LEL  G  VLDLATGTAD+A+  A A   +      V G+DPS GML +G  K+ A GL   V L +GDAQ + ++   SVD ISM+FGIRNV DR  AL+EMARV +  P  R+ ILE   P++G +  +A F + 
Sbjct:   16 FGTGEMFDGIAERYDLLNRVISLGLDQGWRRRAVRSLELSPGATVLDLATGTADLAIAIARAHEVK------VIGVDPSQGMLGVGRRKVEAAGLAGRVELEVGDAQQL-QLGDASVDAISMAFGIRNVPDRARALREMARVTR--PGGRIAILELSEPRSGLMGKLARFHIH 179          
The following BLAST results are available for this feature:
BLAST of EWM26372.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108382|gb|EWM26372.1|5.494e-171100.00ubiquinone menaquinone biosynthesis methyltransfer... [more]
gi|294942599|ref|XP_002783602.1|1.150e-4947.69Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
gi|836722000|ref|WP_047854064.1|1.363e-4350.58class I SAM-dependent methyltransferase [Archangiu... [more]
gi|502593212|ref|WP_012830784.1|6.480e-4348.89class I SAM-dependent methyltransferase [Haliangiu... [more]
gi|873239053|emb|CEL94684.1|2.123e-4245.23unnamed protein product [Vitrella brassicaformis C... [more]
gi|503141535|ref|WP_013376196.1|3.357e-4247.40bifunctional demethylmenaquinone methyltransferase... [more]
gi|115362449|gb|EAU61722.1|6.238e-4247.40ubiquinone/menaquinone biosynthesis methyltransfer... [more]
gi|1180455611|ref|WP_083968208.1|1.807e-4149.42class I SAM-dependent methyltransferase [Hyalangiu... [more]
gi|1124742784|ref|WP_075005416.1|2.558e-4147.67bifunctional demethylmenaquinone methyltransferase... [more]
gi|501192624|ref|WP_012235642.1|3.847e-4147.98class I SAM-dependent methyltransferase [Sorangium... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4326rna4326Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications