rna4325, rna4325 (mRNA) Nannochloropsis gaditana

Overview
Namerna4325
Unique Namerna4325
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1417
Alignment locationCM002463.1:302615..304559 -

Link to JBrowse

Properties
Property NameValue
Productadp-ribosylation factor
Orig transcript idgnl|cribi|Naga_100031g8.2239.mrna
Orig protein idgnl|cribi|Naga_100031g8.2239
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:302615..304559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100031g8gene4168Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26356.1cds4315Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4325rna4325-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4325 ID=rna4325|Name=rna4325|organism=Nannochloropsis gaditana|type=mRNA|length=1417bp
CACAGGATATGTCCGTTCCCGCCCGCCTTGGCTACGAAATAGTGTCCAGC
GGTAAACCAGGCGTGAAAAAAACAGTGGTTTTCCTCCATGGTATCCTAGG
TAGTCTTAAGAACTGGAAGCAGCCTGCGCGCCGCCTCATTGGCATGTTTC
CCCATTATCAAGCGTTGCTTGTCGATCATCGAGGACATGGGCAATCCGAA
CCCGGTCGACCTCCCCACACCTTAGCAGCATGCGCTTTTGATGTACGAGC
CTTGCTGCAGTCCCTTCATTTGCAAGTAGATGTTCTATGTGGGCACTCAT
TCGGCGGAAAAATTGCGCTTGAAGTTGTGAAGCAAGGTCTTGAAGAAAAC
AGCAGGACGGGCAGGTCCCAAGGAGCCGTATTTACTGAGCTACCAAGACA
GACGTGGGTGTTCGACTCCTTGCCCACACCGGTCGATCGGCATAAAGCCA
TCGGGGAAAACTCGGTGTGGGATGTGATCGAGAAGCTTGGCCAAGTCCCC
TTGCCCCAGCGCAGTAAGGAAAAGCTCGTTTCCTTCCTCATCACTGAGAA
GCAGATTCCACCCGCCATTGCCCACTGGTTGATGACGAGCCTTAAAAACG
TGCCCCCTGATTCGACCCACCCAGCAAGTGAAATCGAGGGACGACCCGGA
TCACGAGGGGGCTACGTGTGGGCTTTCGATTTGGACGTGATTCGGGCCCT
TTTCGAGGCCTACACGTGTGCGTGCTACTATGACGTCATGAGCTCACCCG
GCCTCTCCCTCCACGATGCTCGCATTGACTTTATTCGAGCGGGAAAAAAC
GAAGCGTGGACACCGGATGTACTTGCACGGTTCGGGGCCCTTCAAGCAGG
GGGACAGGGACAGGTCAAATTGCATTGCCTGGAGCAAGCAGGGCATTGGA
TCCACGTGGATGATCTGGAAGGCGTGCTCCGACTTTTGGCCCCGACCTTC
CTGCCACCCCTTTGAGAAGAAGGAAAGGAGCAATGCCTTCAGGTCCAGAT
AGCACCGAAAAGAAATTTCTGTGGAATCAGGGTGACCTAGGCTATGGATG
CCAGCCTTGGGTTCCGACATGCTTTAAAGCCTGAGTTATCTAGTCCTGAC
AAGGAGACTCAGCCCAGGAATGTAGGAATAGGAAGGTGCTTTTTCATGCT
TGGAAGTGCCCGTATATGGCACTAATGCGAAGACGCCACACACCAGGCGT
AAGAGTTGCCTTTCTCTCTCCGCACTTTCCACCAGGACGAGGGAAGCAAA
TAAAGAAAAAGGGTGTAAAGAAATTGAGACAGGCACCGAGCGGCGACCGC
CCGGTCACACGGCAGCGCCTGATATTGCTACAGTCCATCAAGCTTAGGTC
GGCGCCTCACACGACCAGATTTCCCGCTGGAAGTCTTGCTCACATTATCT
CAATGAAGTGACCTGCT
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protein sequence of rna4325

>rna4325-protein ID=rna4325-protein|Name=rna4325|organism=Nannochloropsis gaditana|type=polypeptide|length=345bp
MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVG
FNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARL
AEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVG
RRPWWVQETCAISGQGLREGMDWLLQTLEGHSTDSRGGGSEEGAGEVKKE
EEEADIGQDGVPNSSLPAVPTGCVCCGCRRQRRGPNGGSSSEDLRGRRRR
RGWRQGEGEEGGEAGKEEAAEPGLSIGRGVGRKTAANRACQGLCAGGRSV
LHASRGIEMGGAAGGRKEGGEEREEVKTYLDREHGADFGRETCCG
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mRNA from alignment at CM002463.1:302615..304559-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4325 ID=rna4325|Name=rna4325|organism=Nannochloropsis gaditana|type=mRNA|length=1945bp|location=Sequence derived from alignment at CM002463.1:302615..304559- (Nannochloropsis gaditana)
ACAGGTACCTCTCACATAGTCCTTATTCGGGTGAAAATGCTTTGCTTGGA
GAGGAGGTGTGGAGGAAAGGAGCTTTAGAACATTGGCGGGCATACCAAGT
AGGGGGGGAGGAACAGCAGCAGCAGCCCTGGAAGTGATTTCTCTTCCTGA
GCCCACGCGACGTGCTGTTGGTTCCTCCTGATCTGTGCAACTGTGTTCCT
GATATTTTGCGAGTTAATTGTAAAATAATTCGGGGAAATTTTGTCTAATT
GTGCGGCAGTGGCTTCAAACAAACTACATTCCGGAGCAGCCAAGGCCCGG
ACGCCAGTTGGGCCACGCCTGAGGGAGGAAGGCCCCCGCCTTTATTCCCG
CTCTCCTTCCGCTCAGGGGTGCTTCATAGCTATCTGACGTTTTTAAAAGG
GGCAGGCTTTCGGGTGGGGGTTGGTGGAGCGGCGTCAAAATTCAAAACGC
TGGAACACAGCTTGACGGATTGTTTGACGACTCATCATCAGCTGGAGCAT
GGGTCAATTATGTACCCGCCTGGTCGAGCTGGTCTCCCGTCGGACCGAAA
AACGTGTGGTTCTCCTGGGACTGGACAATGCCGGTAAAACTACCTGCGTG
TACCGGCTTCTGCTCGGGAAAAAAGTGGACACGGTGCCCACGGTGGGCTT
CAACAGCGAAGAGGTGCGCTACCAACGTTGCAATTTCATTATGTGGGACA
TAGGGGGCCAGGCTAAAATTCGAAAGCTCTGGAAGCACTACGTGGAATCG
GCGGACGCCTTGATCTTCGTGGTGGACGCGCAAGATCGAGCGCGCCTGGC
GGAAGCCCGGTCGGCCTTTAAACGGATGCTTCGCTACAAGACTTTGAAGA
ACACCGTCCTGCTCATCCTGGCCAACAAGATGGATTACGAGCATGCCATG
TCCTCGGCCGAGATCGTCCAGGGTTTGGAAGTGAAAAGAGTGGTGGGGAG
GCGTCCCTGGTGGGTACAAGAGACCTGCGCCATCTCGGGGCAGGGGCTGA
GGGAGGGGATGGACTGGTTGCTCCAAACCTTGGAAGGGCACAGCACAGAC
AGCCGAGGTGGTGGGAGCGAGGAGGGCGCGGGGGAGGTGAAAAAGGAGGA
GGAGGAAGCAGACATAGGTCAAGACGGGGTGCCAAACTCCTCCCTCCCTG
CGGTCCCGACCGGATGCGTATGCTGCGGGTGCCGGAGGCAGCGGAGGGGG
CCCAACGGGGGCTCGTCATCGGAGGATTTGAGGGGGAGAAGGAGGAGAAG
GGGCTGGCGCCAGGGGGAGGGGGAGGAGGGCGGGGAGGCTGGGAAGGAGG
AGGCGGCGGAGCCAGGGCTCAGCATAGGGAGGGGAGTGGGGAGGAAGACG
GCAGCCAACCGGGCCTGCCAGGGGCTCTGTGCTGGGGGACGCAGTGTTTT
GCACGCAAGCAGGGGTATCGAAATGGGAGGGGCCGCGGGAGGGAGAAAAG
AAGGGGGGGAAGAGAGGGAGGAGGTGAAGACCTATCTCGATCGGGAGCAT
GGCGCGGACTTCGGCAGAGAGACATGCTGCGGTTAGGGAGCAGTGGTGTC
TGTGGAAGCGTCACTCTCGGCGCATGGTTCTACCTAATATGGCGTCCTTG
GTAAACGATTGGGGCTGCCGGTAAGGCTTTTTTTGAATTTTGGCGATAGA
TTCTCTTGGATGATGGGCGGGATGGAAATGGCGAATTTGTCGATAAATGT
GAAGACTTATAGTTCCCATTATGAGGGCACGGGGGCTTGTAGGGTGGCAG
GACCTTGTGGGGGAATGGGCGGAGAAGACAGTGCGAAAATAGCACCAAAA
TTGAAAACAACGACCCACTAAGACGGCATCGAGACAATAGCAGGTCACTT
CATTGAGATAATGTGAGCAAGACTTCCAGCGGGAAATCTGGTCGTGTGAG
GCGCCGACCTAAGCTTGATGGACTGTAGCAATATCAGGCGCTGCC
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Coding sequence (CDS) from alignment at CM002463.1:302615..304559-

>rna4325 ID=rna4325|Name=rna4325|organism=Nannochloropsis gaditana|type=CDS|length=1038bp|location=Sequence derived from alignment at CM002463.1:302615..304559- (Nannochloropsis gaditana)
ATGGGTCAATTATGTACCCGCCTGGTCGAGCTGGTCTCCCGTCGGACCGA
AAAACGTGTGGTTCTCCTGGGACTGGACAATGCCGGTAAAACTACCTGCG
TGTACCGGCTTCTGCTCGGGAAAAAAGTGGACACGGTGCCCACGGTGGGC
TTCAACAGCGAAGAGGTGCGCTACCAACGTTGCAATTTCATTATGTGGGA
CATAGGGGGCCAGGCTAAAATTCGAAAGCTCTGGAAGCACTACGTGGAAT
CGGCGGACGCCTTGATCTTCGTGGTGGACGCGCAAGATCGAGCGCGCCTG
GCGGAAGCCCGGTCGGCCTTTAAACGGATGCTTCGCTACAAGACTTTGAA
GAACACCGTCCTGCTCATCCTGGCCAACAAGATGGATTACGAGCATGCCA
TGTCCTCGGCCGAGATCGTCCAGGGTTTGGAAGTGAAAAGAGTGGTGGGG
AGGCGTCCCTGGTGGGTACAAGAGACCTGCGCCATCTCGGGGCAGGGGCT
GAGGGAGGGGATGGACTGGTTGCTCCAAACCTTGGAAGGGCACAGCACAG
ACAGCCGAGGTGGTGGGAGCGAGGAGGGCGCGGGGGAGGTGAAAAAGGAG
GAGGAGGAAGCAGACATAGGTCAAGACGGGGTGCCAAACTCCTCCCTCCC
TGCGGTCCCGACCGGATGCGTATGCTGCGGGTGCCGGAGGCAGCGGAGGG
GGCCCAACGGGGGCTCGTCATCGGAGGATTTGAGGGGGAGAAGGAGGAGA
AGGGGCTGGCGCCAGGGGGAGGGGGAGGAGGGCGGGGAGGCTGGGAAGGA
GGAGGCGGCGGAGCCAGGGCTCAGCATAGGGAGGGGAGTGGGGAGGAAGA
CGGCAGCCAACCGGGCCTGCCAGGGGCTCTGTGCTGGGGGACGCAGTGTT
TTGCACGCAAGCAGGGGTATCGAAATGGGAGGGGCCGCGGGAGGGAGAAA
AGAAGGGGGGGAAGAGAGGGAGGAGGTGAAGACCTATCTCGATCGGGAGC
ATGGCGCGGACTTCGGCAGAGAGACATGCTGCGGTTAG
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Synonyms
Publications