EWM26356.1, cds4315 (CDS) Nannochloropsis gaditana

Overview
NameEWM26356.1
Unique Namecds4315
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:303024..304061 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26356.1
Productadp-ribosylation factor
Orig transcript idgnl|cribi|Naga_100031g8.2239.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:303024..304061 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR024156Small_GTPase_ARF
IPR006687Small_GTPase_SAR1
IPR006689Small_GTPase_ARF/SAR
Homology
BLAST of EWM26356.1 vs. NCBI_GenBank
Match: gi|585108366|gb|EWM26356.1| (adp-ribosylation factor [Nannochloropsis gaditana])

HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0
Identity = 345/345 (100.00%), Postives = 345/345 (100.00%), Query Frame = 0
Query:    1 MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLEGHSTDSRGGGSEEGAGEVKKEEEEADIGQDGVPNSSLPAVPTGCVCCGCRRQRRGPNGGSSSEDLRGRRRRRGWRQGEGEEGGEAGKEEAAEPGLSIGRGVGRKTAANRACQGLCAGGRSVLHASRGIEMGGAAGGRKEGGEEREEVKTYLDREHGADFGRETCCG 345
            MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLEGHSTDSRGGGSEEGAGEVKKEEEEADIGQDGVPNSSLPAVPTGCVCCGCRRQRRGPNGGSSSEDLRGRRRRRGWRQGEGEEGGEAGKEEAAEPGLSIGRGVGRKTAANRACQGLCAGGRSVLHASRGIEMGGAAGGRKEGGEEREEVKTYLDREHGADFGRETCCG
Sbjct:    1 MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLEGHSTDSRGGGSEEGAGEVKKEEEEADIGQDGVPNSSLPAVPTGCVCCGCRRQRRGPNGGSSSEDLRGRRRRRGWRQGEGEEGGEAGKEEAAEPGLSIGRGVGRKTAANRACQGLCAGGRSVLHASRGIEMGGAAGGRKEGGEEREEVKTYLDREHGADFGRETCCG 345          
BLAST of EWM26356.1 vs. NCBI_GenBank
Match: gi|553179356|ref|XP_005852687.1| (adp-ribosylation factor, partial [Nannochloropsis gaditana CCMP526] >gi|422295845|gb|EKU23144.1| adp-ribosylation factor, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 466.077 bits (1198), Expect = 5.069e-164
Identity = 226/229 (98.69%), Postives = 227/229 (99.13%), Query Frame = 0
Query:    1 MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLEGHSTDSRGGGSEEGAGEVKKEEEEADIGQDGVPNSSLPAVPTGCVCCGCR 229
            MGQLCTRL ELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIV GL+VKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLEGHSTDSRGGGSEEGAGEVKKEEEEADIGQDGVPNSSLPAVPTGCVCCGCR
Sbjct:    1 MGQLCTRLAELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVHGLDVKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLEGHSTDSRGGGSEEGAGEVKKEEEEADIGQDGVPNSSLPAVPTGCVCCGCR 229          
BLAST of EWM26356.1 vs. NCBI_GenBank
Match: gi|585106427|gb|EWM24831.1| (adp-ribosylation factor [Nannochloropsis gaditana])

HSP 1 Score: 195.282 bits (495), Expect = 1.026e-57
Identity = 86/179 (48.04%), Postives = 131/179 (73.18%), Query Frame = 0
Query:    1 MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLE 179
            MGQL TR+++++  + ++R+++LGLD AGKTT +YRL LG+ V ++PT+GFN E+V Y+  +F +WD+GGQ ++RKLW+HY +  DALIFV+D+ DRARL EARS    +L    L +++LL+ ANK D   A+S  E+ + L++  V   RPW++Q +CA++G GL EG+DWL + L+
Sbjct:    1 MGQLMTRVLDVLWGKEDRRLLMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVEKVEYRNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRARLHEARSELHHLLSEPQLLDSILLVYANKADLPQAISVQEMARLLQLDNVAKGRPWYIQPSCAMTGDGLVEGLDWLSEKLK 179          
BLAST of EWM26356.1 vs. NCBI_GenBank
Match: gi|290986091|ref|XP_002675758.1| (ARF/SAR family small GTPase [Naegleria gruberi] >gi|284089356|gb|EFC43014.1| ARF/SAR family small GTPase [Naegleria gruberi])

HSP 1 Score: 190.274 bits (482), Expect = 2.637e-56
Identity = 89/174 (51.15%), Postives = 123/174 (70.69%), Query Frame = 0
Query:    1 MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVGRRPWWVQETCAISGQGLREGMDWL 174
            MGQ   +L E + +  E R++L+GLD AGKTT +Y+L L + V T+PT+GFN E V+Y++ NF MWD+GGQ KIR LW+HY  + +A+IFVVD+ DR R+ EAR   ++ML    L+  V+LILANK D  +AMS+AE+   L +   + +R W++Q  CAISGQGL EG+DWL
Sbjct:    1 MGQSIAKLFENLFKNKEARILLVGLDAAGKTTILYKLKLDENVTTIPTIGFNVETVQYKKINFTMWDVGGQDKIRPLWRHYYANTNAVIFVVDSNDRDRIGEARDELQKMLSDDQLRECVVLILANKQDLPNAMSAAEMTDKLSLHN-LKQRNWFIQPCCAISGQGLFEGLDWL 173          
BLAST of EWM26356.1 vs. NCBI_GenBank
Match: gi|50310595|ref|XP_455317.1| (hypothetical protein [Kluyveromyces lactis NRRL Y-1140] >gi|49644453|emb|CAG98025.1| KLLA0F05225p [Kluyveromyces lactis] >gi|574144006|dbj|BAO41796.1| ADP-ribosylation factor [Kluyveromyces marxianus DMKU3-1042] >gi|693904431|dbj|BAP73236.1| hypothetical protein KMAR_60497 [Kluyveromyces marxianus])

HSP 1 Score: 189.889 bits (481), Expect = 4.235e-56
Identity = 88/182 (48.35%), Postives = 125/182 (68.68%), Query Frame = 0
Query:    1 MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLEGHS 182
            MG   ++L   +    E R++++GLD AGKTT +Y+L LG+ V T+PT+GFN E V Y+  +F +WD+GGQ KIR LW+HY  + + +IFVVD+ DRAR+AEAR   +RML    ++N VLL+ ANK D   AM +AEI + L +   + +RPW++Q TCA SG+GL EG++WL  TL+  S
Sbjct:    1 MGVSFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRARIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMPAAEITEKLGLHS-IRQRPWYIQATCATSGEGLYEGLEWLSTTLKNQS 181          
BLAST of EWM26356.1 vs. NCBI_GenBank
Match: gi|761759793|emb|CEP62540.1| (LALA0S05e07910g1_1 [Lachancea lanzarotensis])

HSP 1 Score: 189.504 bits (480), Expect = 6.666e-56
Identity = 86/182 (47.25%), Postives = 126/182 (69.23%), Query Frame = 0
Query:    1 MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLEGHS 182
            MG   ++L   +    E R++++GLD AGKTT +Y+L LG+ V T+PT+GFN E V Y+  +F +WD+GGQ KIR LW+HY  + + +IFVVD+ DR+R++EAR   +RML    ++N VLL+ ANK D   AMS+AEI + L +   + +RPW++Q TCA SG+GL EG++WL  +L+  S
Sbjct:    1 MGLYISKLFNSLVGSKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRISEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHS-IRQRPWFIQATCATSGEGLYEGLEWLSNSLKNQS 181          
BLAST of EWM26356.1 vs. NCBI_GenBank
Match: gi|1092386773|emb|SCV99832.1| (LAFE_0B03488g1_1 [Lachancea fermentati])

HSP 1 Score: 189.504 bits (480), Expect = 7.113e-56
Identity = 86/182 (47.25%), Postives = 127/182 (69.78%), Query Frame = 0
Query:    1 MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLEGHS 182
            MG   ++L   +    E R++++GLD AGKTT +Y+L LG+ V T+PT+GFN E V Y+  +F +WD+GGQ KIR LW+HY  + + +IFVVD+ DR+R++EAR   +RML    ++N VLL+ ANK D   AMS+AEI + L +   + +RPW++Q TCA SG+GL EG++WL  +L+ +S
Sbjct:    1 MGLYISKLFNSLVGSREMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRISEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHS-IRQRPWFIQATCATSGEGLYEGLEWLSNSLKNNS 181          
BLAST of EWM26356.1 vs. NCBI_GenBank
Match: gi|255719392|ref|XP_002555976.1| (KLTH0H02222p [Lachancea thermotolerans CBS 6340] >gi|238941942|emb|CAR30114.1| KLTH0H02222p [Lachancea thermotolerans CBS 6340])

HSP 1 Score: 188.734 bits (478), Expect = 1.288e-55
Identity = 86/182 (47.25%), Postives = 125/182 (68.68%), Query Frame = 0
Query:    1 MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLEGHS 182
            MG   ++L   +    E R++++GLD AGKTT +Y+L LG+ V T+PT+GFN E V Y+  +F +WD+GGQ KIR LW+HY  + + +IFVVD+ DR+R++EAR   +RML    ++N VLL+ ANK D   AMS+AEI + L +   + +RPW++Q TCA SG+GL EG++WL   L+  S
Sbjct:    1 MGTSFSKLFSSLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRISEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHS-IRQRPWFIQATCATSGEGLYEGLEWLSNNLKNQS 181          
BLAST of EWM26356.1 vs. NCBI_GenBank
Match: gi|145239679|ref|XP_001392486.1| (ADP-ribosylation factor [Aspergillus niger CBS 513.88] >gi|317030395|ref|XP_003188741.1| ADP-ribosylation factor [Aspergillus niger CBS 513.88] >gi|134076997|emb|CAK45406.1| unnamed protein product [Aspergillus niger] >gi|350629619|gb|EHA17992.1| hypothetical protein ASPNIDRAFT_208201 [Aspergillus niger ATCC 1015] >gi|358372822|dbj|GAA89423.1| ADP-ribosylation factor [Aspergillus kawachii IFO 4308] >gi|966765802|dbj|GAQ41653.1| ADP-ribosylation factor [Aspergillus niger] >gi|1002323938|dbj|GAT29453.1| ADP-ribosylation factor [Aspergillus luchuensis] >gi|1111703923|gb|OJI90848.1| hypothetical protein ASPTUDRAFT_26342 [Aspergillus tubingensis CBS 134.48] >gi|1111907941|gb|OJJ73804.1| hypothetical protein ASPBRDRAFT_41524 [Aspergillus brasiliensis CBS 101740] >gi|1114063251|gb|OJZ88249.1| hypothetical protein ASPFODRAFT_130886 [Aspergillus luchuensis CBS 106.47] >gi|1147635400|gb|OOG00959.1| hypothetical protein ASPCADRAFT_202804 [Aspergillus carbonarius ITEM 5010] >gi|1213319088|gb|OWW28323.1| ADP-ribosylation factor family protein [Aspergillus niger])

HSP 1 Score: 188.734 bits (478), Expect = 1.373e-55
Identity = 88/184 (47.83%), Postives = 126/184 (68.48%), Query Frame = 0
Query:    1 MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLEGHSTD 184
            MG   ++L + +  R E R++++GLD AGKTT +Y+L LG+ V T+PT+GFN E V Y+   F +WD+GGQ KIR LW+HY ++   +IFVVD+ DR R+ EAR   +RML    L++ +LL+ ANK D  +AMS AEI Q L ++ +  RRPW++Q TCA +G GL EG++WL +TL   + D
Sbjct:    1 MGLTFSKLFDRLWGRKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRIVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLT-RRPWYIQSTCATTGDGLYEGLEWLAETLRKTNRD 183          
BLAST of EWM26356.1 vs. NCBI_GenBank
Match: gi|949381319|emb|CUS23096.1| (LAQU0S08e02036g1_1 [Lachancea quebecensis])

HSP 1 Score: 190.66 bits (483), Expect = 2.128e-55
Identity = 86/182 (47.25%), Postives = 125/182 (68.68%), Query Frame = 0
Query:    1 MGQLCTRLVELVSRRTEKRVVLLGLDNAGKTTCVYRLLLGKKVDTVPTVGFNSEEVRYQRCNFIMWDIGGQAKIRKLWKHYVESADALIFVVDAQDRARLAEARSAFKRMLRYKTLKNTVLLILANKMDYEHAMSSAEIVQGLEVKRVVGRRPWWVQETCAISGQGLREGMDWLLQTLEGHS 182
            MG   ++L   +    E R++++GLD AGKTT +Y+L LG+ V T+PT+GFN E V Y+  +F +WD+GGQ KIR LW+HY  + + +IFVVD+ DR+R++EAR   +RML    ++N VLL+ ANK D   AMS+AEI + L +   + +RPW++Q TCA SG+GL EG++WL   L+  S
Sbjct:   75 MGTSFSKLFSSLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRISEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHS-IRQRPWFIQATCATSGEGLYEGLEWLSNNLKNQS 255          
The following BLAST results are available for this feature:
BLAST of EWM26356.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108366|gb|EWM26356.1|0.000e+0100.00adp-ribosylation factor [Nannochloropsis gaditana][more]
gi|553179356|ref|XP_005852687.1|5.069e-16498.69adp-ribosylation factor, partial [Nannochloropsis ... [more]
gi|585106427|gb|EWM24831.1|1.026e-5748.04adp-ribosylation factor [Nannochloropsis gaditana][more]
gi|290986091|ref|XP_002675758.1|2.637e-5651.15ARF/SAR family small GTPase [Naegleria gruberi] >g... [more]
gi|50310595|ref|XP_455317.1|4.235e-5648.35hypothetical protein [Kluyveromyces lactis NRRL Y-... [more]
gi|761759793|emb|CEP62540.1|6.666e-5647.25LALA0S05e07910g1_1 [Lachancea lanzarotensis][more]
gi|1092386773|emb|SCV99832.1|7.113e-5647.25LAFE_0B03488g1_1 [Lachancea fermentati][more]
gi|255719392|ref|XP_002555976.1|1.288e-5547.25KLTH0H02222p [Lachancea thermotolerans CBS 6340] >... [more]
gi|145239679|ref|XP_001392486.1|1.373e-5547.83ADP-ribosylation factor [Aspergillus niger CBS 513... [more]
gi|949381319|emb|CUS23096.1|2.128e-5547.25LAQU0S08e02036g1_1 [Lachancea quebecensis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4325rna4325Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications