rna4315, rna4315 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4315
Unique Name	rna4315
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	978
Alignment location	CM002463.1:271595..273460 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100031g19.2237.mrna
Orig protein id	gnl\|cribi\|Naga_100031g19.2237
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:271595..273460 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100031g19	gene4158	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4315	rna4315-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26354.1	cds4305	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:271595..273460+
coding sequence from alignment at CM002463.1:271595..273460+

mRNA sequence

>rna4315 ID=rna4315|Name=rna4315|organism=Nannochloropsis gaditana|type=mRNA|length=978bp
ATGCAGCTCGTCTTCGTCGACGAAGAGCAAGAAATGGAATTGGGAGCCAT
GGCAGCATCGCAAGTATACAAAGAAGAAAAGAATGCTATTTTAACAGCGT
CGGCACCAGAGACGTTGCTTGTGCACGACGTGGCCGTCGAATTGCTAAGA
AGTCTGCAGCAGTGCGTGAAGGGGCAAAGCGGCATTTTGGCCGAAACGAC
GGAGCAAAAAGAGCGTCTCGAAGCTCGTATCGCAGACAGGCATTGGGAAG
TGAGCGTCATCGACTCCGACGTGGTAAATGCCTTCGTTCTGCCCTCCGGC
AACATCTTCGTCTACACCGGTCTCCTCGAACACGTGCAGACTCGCGGCGG
CTTGGCGTTCATCTTGGGCCACGAGGTCGCCCACGCCCTGGCCCGGCATT
CCGTGGAGAAGATAGGCGTCTTATGCCTCGGCTCTTTCTTCCTCGACTTC
ACGGCCGGCTTCCTGGGTGCCTCCTCGCACCGGTACATCCAGTACACGGT
GTTGCCCTACTTGCAGGCCTTGGTCATTGACATGCCCTTTTCTCGCACGC
TCGAGACGGAGGCGGACAAGCTGGGGATGGAGCTCATGGCCCTGGCCGGC
TACGACCCGCAAGAGGCGGTAGAGGTGTGGAAGCGCATGGAAGACGGGGC
CCAAGGCGGCAGCGGAAAGAATAGTCAAGTGGGTCTGCCAGAATTCTTGT
CGACGCATCCCTCCCACCAGAACCGGATCAATCGTCTACAGGCCCAGGTC
CCCGCGGCCCGCGCCTTGCAACAGCAAGCCTTGCGTCTAAAGAAGGAGAA
AGGGGAACGGATTCCGGATGGTACCCAGTCCATCTTGCTTCCGTCCCGTG
TCCGCCAAAAGGTCATCTCGCCGAAAGACGCGCTTTTGCAGGGGCGAAGA
CGGGAAGCGTCAGCACAGACAGCCATGAGAGCCTCCAATTTGGTGGGTGC
TGCGCTTGAAAGAGAGTCACGGGCGTAA

protein sequence of rna4315

>rna4315-protein ID=rna4315-protein|Name=rna4315|organism=Nannochloropsis gaditana|type=polypeptide|length=621bp
MAYTGSTQAEKGGEGGIDKRGGGLPWQPPPRFPGPLGLLGSRHPATSDQD
SAGRTYRDLDKQERQQTQEPLNPPSGTGSNAVNVNLLPYFKQPRGAWHQM
CEDYGLPVSGVVNAQDLRAVLGCTCAEVALGWQDEALRVGKKMAGVLAAL
NYTSDGSVSVTFADPTGRVQGYLHPDVIDEYGPDLCVGSVMVLSGAAILV
SGPGVQRWLNVVPENVRGFYKAVGIEKSEMKKKNGGERVEIGGIMAVDGE
EPGRPSGVRYGEEEEGLVAMGVEDTERGGGVGVDESVRPQSVSAHTPNPP
ASSWHGGGQAGEVHSGMRLSMGWATEDSRMQALAMLGPGVDGVGGEEGGE
EGMEEGAEDVWEGEEKGMDLQEGTSWAREGAGEGLGGGPEGMPRREARFQ
HPGKFFSMDHDCGRPLRGRAGAHSAGRGQEPVEKIGSDAASPSAYFLGLM
GGRRRGEGRGEGGISRFEGPSSLDSTVAQPGDDVVERRKEKEGMGGRKSA
EEEACEALLQEWVGRRKAGAEGEEGMEFEQGGRREGWSLSRGGVGEGGRG
SGAGGAGREAIESGIIPPPPPLSVGPCVIEGGKDREREMLVGVGGGEGGE
GGREEVDVLDEALEEDEALWA

mRNA from alignment at CM002463.1:271595..273460+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4315 ID=rna4315|Name=rna4315|organism=Nannochloropsis gaditana|type=mRNA|length=1866bp|location=Sequence derived from alignment at CM002463.1:271595..273460+ (Nannochloropsis gaditana)
ATGGCATATACTGGTAGCACacaggcggagaagggaggggaaggagggat
tgacaagaggggaggggggcttccgtggcaacctcctccccgttttCCGG
GCCCACTAGGTCTCCTCGGCTCTCGTCACCCCGCTACCAGTGATCAGGAT
AGTGCTGGGCGCACGTACAGAGACTTAGACAAACAAGAGCGCCAGCAGAC
ACAGGAGCCGCTCAACCCGCCCTCAGGGACAGGCTCCAATGCGGTAAATg
tcaacctcctgccttACTTCAAGCAACCGCGAGGCGCCTGGCACCAGATG
TGCGAGGATTATGGCCTACCCGTCTCAGGCGTAGTCAATGCTCAAGACCT
TCGAGCAGTGCTCGGGTGTACATGTGCGGAAGTGGCACTTGGATGGCAGG
ACGAGGCCTTGCgcgtggggaaaaaaatggcgGGCGTGCTAGCCGCCTTG
AATTATACAAGCGATGGCAGCGTGAGTGTGACATTTGCCGACCCGACTGG
GCGAGTGCAGGGGTACCTACACCCCGATGTAATCGATGAATACGGCCCGG
ACCTTTGCGTTGGCTCCGTCATGGTGTTGAGTGGCGCGGCGATCTTGGTG
AGCGGGCCCGGCGTGCAACGCTGGTTGAATGTCGTCCCAGAGAACGTCCG
AGGCTTCTACAAAGCAGTCGGAATCGAGAAAAGTgaaatgaagaagaaaa
atggaggggaaagggtagAGATAGGGGGAATCATGGCGGTGGACGGCGAG
GAGCCCGGCCGGCCGAGCGGGGTGAggtacggggaggaagaggaggggct
cGTGGCgatgggagtggaggacaccgagagaggtggaggtgtGGGAGTTG
ATGAGTCCGTCAGACCACAATCCGTGTCTGCCCATACACCGAACCCTCCT
GCGTCTTCTtggcacggaggaggacaagctgGGGAGGTGCATTCGGGCAT
GCGTCTGAGCATGGGGTGGGCGACGGAGGACTCGCGGATGCAGGCCTTGG
CCATGCTGGGCCCCGGGGTCGAtggggtagggggggaagaaggaggggag
gaagggatggaggaaggggcggaggacgtgtgggagggagaggagaaggg
gatggATCTCCAGGAGGGGACGtcgtgggcgagggagggagcgggggagg
gcctgggtgGGGGGCCAGAGGGGATGCCCCGGAGAGAAGCCCGGTTTCAG
CATCCGGGAAAATTCTTCTCCATGGACCATGACTGCGGTCGTCCGcttcg
agggagggcgggggctcACTCtgctgggcgggggcaggagccgGTCGAGA
AAATCGGATCGGACGCGGCTTCCCCTTCGGCGTATTTCCTGGGGTTGatg
ggtggaaggaggaggggggaaggtaggggggaagggggaataAGCCGGTT
TGAGGGGCCGTCCTCATTGGATTCAACGGTCGCGCAGCCGGGGGACGATg
tcgtggagaggaggaaggagaaggagggcatgggcggcAGGAAGAgcgca
gaagaggaggcgtgCGAGGCGCTCTTGCAGGAATgggtagggaggagaaa
ggcaggggcagagggagaggaggggatggagttTGAGCAGGgcggacgac
gggagggatggagcctttcgagggggggagtaggggagggcgggaggggg
agtggggcgggcggggccggcAGGGAGGCTATCGAGAGTGGAATAAtacc
tccgccaccaccactgAGCGTGGGGCCCTGCGtgatcgagggagggaagg
acagggagagggagatgttggtcggggtggggggaggagaagggggggag
ggagggagggaggaagtggacgTGTTGGatgaggcgctggaggaggatga
ggcgctCTGGGCGTAG

Coding sequence (CDS) from alignment at CM002463.1:271595..273460+

>rna4315 ID=rna4315|Name=rna4315|organism=Nannochloropsis gaditana|type=CDS|length=1866bp|location=Sequence derived from alignment at CM002463.1:271595..273460+ (Nannochloropsis gaditana)
ATGGCATATACTGGTAGCACacaggcggagaagggaggggaaggagggat
tgacaagaggggaggggggcttccgtggcaacctcctccccgttttCCGG
GCCCACTAGGTCTCCTCGGCTCTCGTCACCCCGCTACCAGTGATCAGGAT
AGTGCTGGGCGCACGTACAGAGACTTAGACAAACAAGAGCGCCAGCAGAC
ACAGGAGCCGCTCAACCCGCCCTCAGGGACAGGCTCCAATGCGGTAAATg
tcaacctcctgccttACTTCAAGCAACCGCGAGGCGCCTGGCACCAGATG
TGCGAGGATTATGGCCTACCCGTCTCAGGCGTAGTCAATGCTCAAGACCT
TCGAGCAGTGCTCGGGTGTACATGTGCGGAAGTGGCACTTGGATGGCAGG
ACGAGGCCTTGCgcgtggggaaaaaaatggcgGGCGTGCTAGCCGCCTTG
AATTATACAAGCGATGGCAGCGTGAGTGTGACATTTGCCGACCCGACTGG
GCGAGTGCAGGGGTACCTACACCCCGATGTAATCGATGAATACGGCCCGG
ACCTTTGCGTTGGCTCCGTCATGGTGTTGAGTGGCGCGGCGATCTTGGTG
AGCGGGCCCGGCGTGCAACGCTGGTTGAATGTCGTCCCAGAGAACGTCCG
AGGCTTCTACAAAGCAGTCGGAATCGAGAAAAGTgaaatgaagaagaaaa
atggaggggaaagggtagAGATAGGGGGAATCATGGCGGTGGACGGCGAG
GAGCCCGGCCGGCCGAGCGGGGTGAggtacggggaggaagaggaggggct
cGTGGCgatgggagtggaggacaccgagagaggtggaggtgtGGGAGTTG
ATGAGTCCGTCAGACCACAATCCGTGTCTGCCCATACACCGAACCCTCCT
GCGTCTTCTtggcacggaggaggacaagctgGGGAGGTGCATTCGGGCAT
GCGTCTGAGCATGGGGTGGGCGACGGAGGACTCGCGGATGCAGGCCTTGG
CCATGCTGGGCCCCGGGGTCGAtggggtagggggggaagaaggaggggag
gaagggatggaggaaggggcggaggacgtgtgggagggagaggagaaggg
gatggATCTCCAGGAGGGGACGtcgtgggcgagggagggagcgggggagg
gcctgggtgGGGGGCCAGAGGGGATGCCCCGGAGAGAAGCCCGGTTTCAG
CATCCGGGAAAATTCTTCTCCATGGACCATGACTGCGGTCGTCCGcttcg
agggagggcgggggctcACTCtgctgggcgggggcaggagccgGTCGAGA
AAATCGGATCGGACGCGGCTTCCCCTTCGGCGTATTTCCTGGGGTTGatg
ggtggaaggaggaggggggaaggtaggggggaagggggaataAGCCGGTT
TGAGGGGCCGTCCTCATTGGATTCAACGGTCGCGCAGCCGGGGGACGATg
tcgtggagaggaggaaggagaaggagggcatgggcggcAGGAAGAgcgca
gaagaggaggcgtgCGAGGCGCTCTTGCAGGAATgggtagggaggagaaa
ggcaggggcagagggagaggaggggatggagttTGAGCAGGgcggacgac
gggagggatggagcctttcgagggggggagtaggggagggcgggaggggg
agtggggcgggcggggccggcAGGGAGGCTATCGAGAGTGGAATAAtacc
tccgccaccaccactgAGCGTGGGGCCCTGCGtgatcgagggagggaagg
acagggagagggagatgttggtcggggtggggggaggagaagggggggag
ggagggagggaggaagtggacgTGTTGGatgaggcgctggaggaggatga
ggcgctCTGGGCGTAG

Synonyms

Publications