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Properties
| Property Name | Value |
|---|
| Product | Exocyst complex, component Exoc1 |
| Orig transcript id | gnl|cribi|Naga_100031g23.2261.mrna |
| Orig protein id | gnl|cribi|Naga_100031g23.2261 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:257249..261355 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4311 ID=rna4311|Name=rna4311|organism=Nannochloropsis gaditana|type=mRNA|length=372bp
ATGACCATGAACAAGGTAATGCAAACATTTGAGATGGAATATAGCGTCGG
CCCCCCCGGGCCGAAGAAGAAGGAAACGGAAAACCAAAGCCAACAACTGC
AATTCCGCCTGAAAGATCCCAAATCTGTGGAAGAATTATGTAGAATAGCT
TACAATGGAAGTACATGTACCCTTTCTTGTGGTGCTCGAATGTTTGTTGT
CGGGTTTTTGGTCGGTTCTGGACGCCTCCTTTCGGATCTTACGCTGCTAG
GCTCGCGGACTCAGGGTCCGGGCTTCTGCACCCATGCGCTGGTGGCTTCG
GTTAGTCCGATATCCTTGTCATTTCTTCCCTTACTGTCTCTTTCTGACTT
CTTGTACATTCGTGTTTGTTAA back to topprotein sequence of rna4311 >rna4311-protein ID=rna4311-protein|Name=rna4311|organism=Nannochloropsis gaditana|type=polypeptide|length=1283bp
MYRMDARQSIKRLLKGKPAPSYYKRLSHVRNKSSLVDVSGFNAGAGNMGR
VNSGSYSPTGPMGDELNGLLGDDIHRDQLLRIVHKEVLDTPDEQEVLFLG
AVHKGKASKYHIGGLVGAASGERSRYLCIALETGSRPHFEVKSLDSCQGQ
EDRGRDGPVSPSSSFSTPRSVSCAGSECFVVVYYFTMAAGAMGADVQVTV
KSDVYLNDLSSVEYGPGTDFTLTFEQDGAPGNVAKPHYQLAALTQAFRDE
IVWNILTIADVCCQVQPKTQGIDLHGLGLTASAQNFLSRNEALGRFLVIA
LDFEKEKWEESRVGGIARGKRGGDGAALPGVLMEAVWSSQARDQELEGLL
DRFQWPTQTVEEIDGQLSERLKGLESDTMEVLLSWESAASRRPSTMTGAQ
DGGKGPDTASPAPPPLGPAAPGVDGEGEGYLSTLKLVEMLEELAQELAEV
EAWLAGKGEALTRLQTDMQEIEEENNRLERQWKNFSRLNAVLQPLVQELS
LDHAQESLLRDPVRFLDGGTGQLPPGEGAPEPGRPGGQKGGGMSASETSA
LVEEKVAVVVAAAQVLHRGLALLEGREVLGAEDRDGSRSPATGEDVMAFH
KLSLSSSPTRTGNRPWEPVKVSVPPVPDGRSSSSSRSPLPPSQPASTPVA
GVAPLKTIPRRLMDMTSLRSRSSYYADLRAVFLERVLAYLSSLFPACTPA
GRLPNPVAPGHGGSRGNQTLAQELADAQRAFHTQLLDYEPLVEVVVGMLQ
GVPKGPGWMDGLLHRYSEAGSSGLYRPFLKAYFAELHAKTQTQGGTGNSG
WFEGGVPAPSIFSNQTTASMAALPRAHINDFGSQGVVAFPPPSLRGNGSE
PMFGHPKVSSSIPGAATSYYQQQACLLQQERTGGKGMGLTRSMAIDQACA
ELVPVVRREQHFIVELFKLQVDDSEDLRKLQSVLEVEFDKLRDKLKEQAE
AAMDADPIEGLAVVAVVTGLLGPKPGSPSGPRASYQGGNVAGRREQEDEG
RKPTRKAMGHAMLVTSQDSFMLELLISLQRSLGQKFHTFVADQEVWINHQ
NPDIKRAGVLAPFAKFPIFVDRLALAVGGQMIGIAEAALQQLSSSLLAWL
ERLSLRGDQKYADVVRLENYHFFVQTMSPRQQCLIGSDVLVSFIDQAQAA
YEAAVQRYASWSLGYAFPEVTAFFGSIDDLIVKVGVGDVSIHVPKTALFK
LTQEACSRKAIADSLRTAFRRLRKHISDDSGLFLPLWDRISLLLYQRFVR
YEDVILQCYDVKLEPPAILVRQLAQECRTQASK back to topmRNA from alignment at CM002463.1:257249..261355+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4311 ID=rna4311|Name=rna4311|organism=Nannochloropsis gaditana|type=mRNA|length=4107bp|location=Sequence derived from alignment at CM002463.1:257249..261355+ (Nannochloropsis gaditana)
TTGTACTGGCCATGCGCGGTCGATTTTCTGTTTCTTTCAGGACAAGAGCT
TGTCTCTCTGCATGTCGCCAAATTTGAATCCATCGCTGAAGGGTGCTTTT
CACCATCATTAATTACGACATATTTCTGGTCTCATGCAATGTACAGGATG
GACGCGAGGCAATCTATCAAGCGGCTGCTCAAAGGGAAGCCAGCTCCATC
CTACTATAAGCGCCTGAGTCATGTCCGCAACAAAAGCAGCTTGGTAGACG
TGTCCGGGTTTAATGCTGGGGCAGGGAATATGGGACGGGTCAATAGTGGT
AGCTATTCCCCGACCGGGCCCATGGGCGACGAACTCAATGGTTTGCTTGG
CGATGACATACACAGGGATCAACTACTGCGGATTGTGCACAAGGAAGTGT
TGGACACTCCTGACGAGCAGGAGGTCCTATTCTTGGGTGCGGTCCACAAG
GGAAAAGCCAGCAAATATCACATTGGTGGTTTGGTAGGAGCGGCAAGTGG
AGAACGCAGCCGTTACCTATGCATTGCACTGGAAACTGGCTCGCGCCCCC
ATTTTGAGGTGAAGTCCTTGGACTCTTGTCAGGGACAGGAAgaccgaggg
cgggacgggcccgtatccccttcctcctccttctcgacgcCCCGCTCCGT
CTCCTGCGCCGGCTCTGAATGCTTTGTGGTGGTGTATTACTTCACCATGG
CGGCCGGTGCAATGGGAGCTGACGTCCAAGTGACGGTAAAAAGCGACGTG
TATTTGAATGACCTGAGTTCGGTGGAGTACGGCCCTGGTACGGATTTCAC
CCTCACGTTTGAGCAAGACGGTGCCCCGGGCAACGTTGCAAAGCCCCATT
ACCAGCTGGCAGCTCTGACCCAAGCTTTCCGGGACGAAATCGTCTGGAAC
ATTCTGACGATCGCCGATGTGTGCTGCCAAGTGCAGCCCAAGACGCAGGG
CATCGATCTGCACGGGCTGGGCTTGACGGCCAGCGCGCAGAATTTTCTCT
CCCGGAACGAGGCTTTGGGGCGTTTTCTGGTCATAGCCCTGGActtcgag
aaggaaaagtgggaggagagccgTGTGGGAGGGATAgccagggggaagag
agggggagacggggcgGCGCTGCCGGGCGTCTTGATGGAGGCCGTGTGGT
CTTCGCAGGCCCGCGACCAAGAGCTGGAAGGGCTCCTCGACCGCTTCCAA
TGGCCCACACAAACGGTCGAAGAAATCGACGGCCAGCTCTCGGAGCGGCT
GAAAGGGCTGGAGAGCGACACCATGGAGGTGCTCCTAAGCTGGGAGTCCG
CAGCATCCCGACGCCCTTCGACCATGACGGGGGCtcaggacggaggaaag
ggcccAGACACagcctctcccgcccctcctccccttggcCCCGCAGCCCC
GggggtggacggggagggagaggggtacCTGTCCACGTTGAAACTGGTGG
AAatgctggaggagctcgccCAGGAattggcggaggtggaggcctggctg
gcggggaagggagaggcccTGACGCGGCTCCAGACGGACATGCAGGaaat
cgaggaggaaaacaaccGATTGGAGCGGCAATGGAAGAACTTCTCCCGCT
TGAACGCGGTCTTGCAACCCTTGGTCCAGGAGCTCTCTCTTGATCATGCG
CaggaaagcctcctccgTGACCCGGTGCGATTTCTGGATGGCGGCACCGG
CCAGCTCCCTCCCGGGGAAGGCGCCCCGGAGCCAGgacggcctggaggac
agaagggagggggcatgAGCGCGAGCGAGACCTctgccttggtggaggag
aaggtggctgtcgtggtggcggccgcgcaAGTCCTGCACCGGGGACTGGC
GTTACTGGAGGGACGAGAGGTGTTGGGAGCAGAAGACAGGGATGGGAGCC
GCAGTCCGGCTACCGGTGAGGATGTCATGGCTTTCCACAAGCTGTCActc
tcctccagccccactCGCACCGGAAATCGGCCCTGGGAGCCTGTAAAGGT
GTCCGTTCCCCCCGTTCCAGACGggcgatcctcctcctcttcccgctccc
ctctccctccctcccaacctgcctccacccccgtGGCAGGCGTGGCGCCT
CTCAAAACGATCCCTCGTCGCCTCATGGATATGACCAGCTTGCGTTCTCG
CTCATCCTACTATGCCGACCTCCGTGCCGTCTTCTTGGAGCGCGTCCTGG
CCtacctgtcctccctcttcccagcctGCACCCCCGCAGGCCGCCTCCCC
AACCCCGTCGCGCCCGGGCACGGTGGGAGCAGAGGAAACCAGACGTTAGC
GCAAGAGCTTGCAGATGCTCAGCGAGCATTCCACACCCAGCTCCTGGACT
ACGAGCCtttggtggaggtggtggtgggcatgcTCCAGGGCGTGCCGAAG
GGACCAGGCTGGATGGACGGTCTCCTCCACAGGTATTCGGAAGCGGGCTC
CTCCGGACTCTACCGGCCTTTTCTCAAGGCATACTTCGCAGAGCTCCACG
CCAAAACTCAGACCCAGGGTGGGACGGGCAACAGCGGGTGGTTTGAGGGA
GGCGTGCCAGCGCCGTCCATATTTTCTAACCAGACGACtgcctccatggc
cgccctcccccgcgctcACATCAACGACTTTGGCAGCCAAGGTGTTGTGG
cctttccgcccccttctCTGCGTGGGAACGGCTCCGAGCCCATGTTCGGC
CACCCGAAGGTTTCAAGTTCCATTCCCGGCGCTGCCACGTCGTATTATCA
GCAGCAGGCGTGCTTGCTACAGCAAGAGAGgactggaggaaagggaatgg
GATTGACCCGCTCCATGGCTATAGATCAGGCCTGCGCAGAGCTCGTACCC
GTGGTCAGGCGGGAGCAGCATTTCATCGTGGAGCTTTTCAAGTTGCAGGT
GGACGACAGTGAGGACCTACGGAAATTACAGAGTGTGCTCGAGGTAGAAT
TCGACAAGCTCAGGGATAAATTGAAGGAGCAGGCCGAGGCAGCGATGGAC
GCAGACCCAATTGAAGGCTTGGCGGTTGTGGCCGTGGTCACGGGCCTGCT
GGGGCCCAAGCCCGGCTCTCCCTCGGGACCACGCGCAAGCTACCAGGGGG
GAAACGTGGCGGGAAGgcgcgagcaggaggacgaaggaagaaagccgACA
CGGAAAGCGATGGGCCACGCGATGCTGGTGACCTCGCAGGATAGCTTTAT
GCTCGAGCTCCTAATCTCTTTGCAGCGATCTTTGGGCCAAAAATTTCACA
CATTTGTCGCCGACCAGGAGGTATGGATCAACCACCAAAACCCCGACATC
AAACGTGCCGGGGTTTTAGCACCCTTTGCCAAGTTCCCGATATTTGTGGA
CCGGCTGGCCTTGGCGGTGGGCGGGCAAATGATCGGCATCGCCGAGGCTG
CCTTGCAGCAACTCTCCAGTAGCCTCCTTGCTTGGTTGGAGCGTCTGAGC
CTTCGGGGGGACCAAAAATATGCGGACGTAGTGCGATTGGAAAACTATCA
TTTTTTTGTACAGACCATGAGCCCTCGACAGCAGTGTCTCATCGGCTCGG
ACGTTTTGGTGAGCTTTATTGATCAAGCTCAGGCCGCTTATGAGGCAGCA
GTACAGCGGTATGCGTCCTGGTCGCTGGGATACGCCTTTCCGGAAGTCAC
GGCTTTTTTCGGAAGCATAGACGACCTTATAGTCAAGGTCGGCGTGGGGG
ACGTGAGCATCCACGTCCCAAAAACTGCCTTGTTCAAACTAACGCAGGAG
GCTTGTTCCCGCAAAGCTATCGCTGACAGTTTAAGGACCGCCTTCCGTCG
TCTGCGCAAGCACATCAGTGACGACAGTGGATTGTTTCTCCCCCTGTGGG
ACCGTATTTCCCTCTTACTCTACCAGCGCTTTGTGCGGTATGAGGACGTG
ATATTGCAGTGCTACGATGTGAAATTGGAGCCTCCCGCGATCCTCGTACG
GCAGCTTGCACAAGAGTGCCGTACTCAAGCGTCTAAGTAGACAATCGAAA
ACGTGCAATGAGTGCTCGACTCCAAACTGTAAAGAATGTAGATGACATCT
GTTGACCAATGCCACTAGTTCCTACGGTGGCTTATCCACGTAGACTCATT
GTTTCCG back to topCoding sequence (CDS) from alignment at CM002463.1:257249..261355+ >rna4311 ID=rna4311|Name=rna4311|organism=Nannochloropsis gaditana|type=CDS|length=3852bp|location=Sequence derived from alignment at CM002463.1:257249..261355+ (Nannochloropsis gaditana)
ATGTACAGGATGGACGCGAGGCAATCTATCAAGCGGCTGCTCAAAGGGAA
GCCAGCTCCATCCTACTATAAGCGCCTGAGTCATGTCCGCAACAAAAGCA
GCTTGGTAGACGTGTCCGGGTTTAATGCTGGGGCAGGGAATATGGGACGG
GTCAATAGTGGTAGCTATTCCCCGACCGGGCCCATGGGCGACGAACTCAA
TGGTTTGCTTGGCGATGACATACACAGGGATCAACTACTGCGGATTGTGC
ACAAGGAAGTGTTGGACACTCCTGACGAGCAGGAGGTCCTATTCTTGGGT
GCGGTCCACAAGGGAAAAGCCAGCAAATATCACATTGGTGGTTTGGTAGG
AGCGGCAAGTGGAGAACGCAGCCGTTACCTATGCATTGCACTGGAAACTG
GCTCGCGCCCCCATTTTGAGGTGAAGTCCTTGGACTCTTGTCAGGGACAG
GAAgaccgagggcgggacgggcccgtatccccttcctcctccttctcgac
gcCCCGCTCCGTCTCCTGCGCCGGCTCTGAATGCTTTGTGGTGGTGTATT
ACTTCACCATGGCGGCCGGTGCAATGGGAGCTGACGTCCAAGTGACGGTA
AAAAGCGACGTGTATTTGAATGACCTGAGTTCGGTGGAGTACGGCCCTGG
TACGGATTTCACCCTCACGTTTGAGCAAGACGGTGCCCCGGGCAACGTTG
CAAAGCCCCATTACCAGCTGGCAGCTCTGACCCAAGCTTTCCGGGACGAA
ATCGTCTGGAACATTCTGACGATCGCCGATGTGTGCTGCCAAGTGCAGCC
CAAGACGCAGGGCATCGATCTGCACGGGCTGGGCTTGACGGCCAGCGCGC
AGAATTTTCTCTCCCGGAACGAGGCTTTGGGGCGTTTTCTGGTCATAGCC
CTGGActtcgagaaggaaaagtgggaggagagccgTGTGGGAGGGATAgc
cagggggaagagagggggagacggggcgGCGCTGCCGGGCGTCTTGATGG
AGGCCGTGTGGTCTTCGCAGGCCCGCGACCAAGAGCTGGAAGGGCTCCTC
GACCGCTTCCAATGGCCCACACAAACGGTCGAAGAAATCGACGGCCAGCT
CTCGGAGCGGCTGAAAGGGCTGGAGAGCGACACCATGGAGGTGCTCCTAA
GCTGGGAGTCCGCAGCATCCCGACGCCCTTCGACCATGACGGGGGCtcag
gacggaggaaagggcccAGACACagcctctcccgcccctcctccccttgg
cCCCGCAGCCCCGggggtggacggggagggagaggggtacCTGTCCACGT
TGAAACTGGTGGAAatgctggaggagctcgccCAGGAattggcggaggtg
gaggcctggctggcggggaagggagaggcccTGACGCGGCTCCAGACGGA
CATGCAGGaaatcgaggaggaaaacaaccGATTGGAGCGGCAATGGAAGA
ACTTCTCCCGCTTGAACGCGGTCTTGCAACCCTTGGTCCAGGAGCTCTCT
CTTGATCATGCGCaggaaagcctcctccgTGACCCGGTGCGATTTCTGGA
TGGCGGCACCGGCCAGCTCCCTCCCGGGGAAGGCGCCCCGGAGCCAGgac
ggcctggaggacagaagggagggggcatgAGCGCGAGCGAGACCTctgcc
ttggtggaggagaaggtggctgtcgtggtggcggccgcgcaAGTCCTGCA
CCGGGGACTGGCGTTACTGGAGGGACGAGAGGTGTTGGGAGCAGAAGACA
GGGATGGGAGCCGCAGTCCGGCTACCGGTGAGGATGTCATGGCTTTCCAC
AAGCTGTCActctcctccagccccactCGCACCGGAAATCGGCCCTGGGA
GCCTGTAAAGGTGTCCGTTCCCCCCGTTCCAGACGggcgatcctcctcct
cttcccgctcccctctccctccctcccaacctgcctccacccccgtGGCA
GGCGTGGCGCCTCTCAAAACGATCCCTCGTCGCCTCATGGATATGACCAG
CTTGCGTTCTCGCTCATCCTACTATGCCGACCTCCGTGCCGTCTTCTTGG
AGCGCGTCCTGGCCtacctgtcctccctcttcccagcctGCACCCCCGCA
GGCCGCCTCCCCAACCCCGTCGCGCCCGGGCACGGTGGGAGCAGAGGAAA
CCAGACGTTAGCGCAAGAGCTTGCAGATGCTCAGCGAGCATTCCACACCC
AGCTCCTGGACTACGAGCCtttggtggaggtggtggtgggcatgcTCCAG
GGCGTGCCGAAGGGACCAGGCTGGATGGACGGTCTCCTCCACAGGTATTC
GGAAGCGGGCTCCTCCGGACTCTACCGGCCTTTTCTCAAGGCATACTTCG
CAGAGCTCCACGCCAAAACTCAGACCCAGGGTGGGACGGGCAACAGCGGG
TGGTTTGAGGGAGGCGTGCCAGCGCCGTCCATATTTTCTAACCAGACGAC
tgcctccatggccgccctcccccgcgctcACATCAACGACTTTGGCAGCC
AAGGTGTTGTGGcctttccgcccccttctCTGCGTGGGAACGGCTCCGAG
CCCATGTTCGGCCACCCGAAGGTTTCAAGTTCCATTCCCGGCGCTGCCAC
GTCGTATTATCAGCAGCAGGCGTGCTTGCTACAGCAAGAGAGgactggag
gaaagggaatggGATTGACCCGCTCCATGGCTATAGATCAGGCCTGCGCA
GAGCTCGTACCCGTGGTCAGGCGGGAGCAGCATTTCATCGTGGAGCTTTT
CAAGTTGCAGGTGGACGACAGTGAGGACCTACGGAAATTACAGAGTGTGC
TCGAGGTAGAATTCGACAAGCTCAGGGATAAATTGAAGGAGCAGGCCGAG
GCAGCGATGGACGCAGACCCAATTGAAGGCTTGGCGGTTGTGGCCGTGGT
CACGGGCCTGCTGGGGCCCAAGCCCGGCTCTCCCTCGGGACCACGCGCAA
GCTACCAGGGGGGAAACGTGGCGGGAAGgcgcgagcaggaggacgaagga
agaaagccgACACGGAAAGCGATGGGCCACGCGATGCTGGTGACCTCGCA
GGATAGCTTTATGCTCGAGCTCCTAATCTCTTTGCAGCGATCTTTGGGCC
AAAAATTTCACACATTTGTCGCCGACCAGGAGGTATGGATCAACCACCAA
AACCCCGACATCAAACGTGCCGGGGTTTTAGCACCCTTTGCCAAGTTCCC
GATATTTGTGGACCGGCTGGCCTTGGCGGTGGGCGGGCAAATGATCGGCA
TCGCCGAGGCTGCCTTGCAGCAACTCTCCAGTAGCCTCCTTGCTTGGTTG
GAGCGTCTGAGCCTTCGGGGGGACCAAAAATATGCGGACGTAGTGCGATT
GGAAAACTATCATTTTTTTGTACAGACCATGAGCCCTCGACAGCAGTGTC
TCATCGGCTCGGACGTTTTGGTGAGCTTTATTGATCAAGCTCAGGCCGCT
TATGAGGCAGCAGTACAGCGGTATGCGTCCTGGTCGCTGGGATACGCCTT
TCCGGAAGTCACGGCTTTTTTCGGAAGCATAGACGACCTTATAGTCAAGG
TCGGCGTGGGGGACGTGAGCATCCACGTCCCAAAAACTGCCTTGTTCAAA
CTAACGCAGGAGGCTTGTTCCCGCAAAGCTATCGCTGACAGTTTAAGGAC
CGCCTTCCGTCGTCTGCGCAAGCACATCAGTGACGACAGTGGATTGTTTC
TCCCCCTGTGGGACCGTATTTCCCTCTTACTCTACCAGCGCTTTGTGCGG
TATGAGGACGTGATATTGCAGTGCTACGATGTGAAATTGGAGCCTCCCGC
GATCCTCGTACGGCAGCTTGCACAAGAGTGCCGTACTCAAGCGTCTAAGT
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