rna4307, rna4307 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4307
Unique Name	rna4307
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2352
Alignment location	CM002463.1:247625..249360 +

Link to JBrowse

Properties


Property Name	Value
Product	succinyl- ligase subunit mitochondrial precursor
Orig transcript id	gnl\|cribi\|Naga_100031g28.2264.mrna
Orig protein id	gnl\|cribi\|Naga_100031g28.2264
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:247625..249360 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100031g28	gene4151	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4307	rna4307-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26381.1	cds4297	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:247625..249360+
coding sequence from alignment at CM002463.1:247625..249360+

mRNA sequence

>rna4307 ID=rna4307|Name=rna4307|organism=Nannochloropsis gaditana|type=mRNA|length=2352bp
ACGGTTTTTAATTAGAGGCTTGGCCATGACTGCGAGTAGTCCGGACGGCG
ACAACAGCCCTCATCGCTTGGCTTTTCAGGCTATGATCCCCTCACTTCAT
GAAAGGACCCTTGCTGCCGTTGCCGCTCTGAATTTTACGCAAATGACTCC
AGTGCAGGCCTCCACCATCCCCCTTTTCCTCACGAACAAAGACGTCTGTG
TCGAAGCTGTCACAGGCTCTGGCAAAACGCTGGCCTTCGTTATCCCGGCT
GTGGAGATGATTCTCCGACGGAAATCCCCTTTGAAGAAACATGAAGTAGG
TGCGATCATCATTTCACCCACCCGGGAACTGGCCAAACAAATATTGAAAG
TAACGACGCATTTTTGTAGCCACACGGGATTACGCCCACCCTTGCTTCTG
GTGGGTGGTACAGACATTGTCGGCGACAACTTTAAGCGCTTTAGTCAGGA
CGGAGCGGACATCTTAGTCGGCACCCCCGGGCGTTTGCACGACGTCTTGG
AGCGCTACGGGCATGCGATTGGTGTGCGAGAGCTCGAAGTGCTGATACTG
GACGAGGCTGACACCTTGCTAAACATGGGGTTTAAAGCCACGCTCACGGC
CATCCTGGACCACCTGCCGAAGCAGCGCAGGACTGGCTTGTTTTCCGCGA
CGCAAACCCGTGAAGTCCGGCAGCTCGCCCGGGCTGGGATGCGGAACCCT
GCCACGGTCGCCGTCCAGGTGGTGAACCAGCAGACTCGAGAGGTGCAAGC
CACGCCCCAGACCCTCTTGAATTTTCATTGGACGTGCGCGCGGCCGGAGG
AAAAGCTGGGCAGGTTGTTAGCCTTCTTGTCCCGGCACCGGGAAAAGAAA
GTGATGGTGTTTTTCATCACGTGTGCGGCTGTGGATTATTTCGCGAGGAT
TCTGACCCAACACCCCGCCTTCAGACGGGTCTTGGGCACGGACCAAGGGG
AAGGGAATGGGAAGAAACGGAAGGTGGGAGGGCTTCAGGGGAGTCGCGTG
GCCGTACTCCACGGGAAAATGGTGCAGAAAAAGAGGGATGGGATGCTTGC
CCGTTTCACACAGGCGGCCTCCGAAGGGGGCGGGGTCTTGCTCTGCACGG
ACGTGGCGGCACGCGGCTTGGATGTCCCGGACGTGGACTGGATCGTCCAA
TACGAGCCCCCTCAGGACCCGTCCTTTTTCATCCACCGGGTGGGAAGGAC
GGCTCGGGCAGGCAGGGTGGGGCGTTCCCTGACTTTCTTGCTGGAGGCAG
AGGAGCCCTACGTGGAATTTTTGCGCCTGAAGGGCGTCCCCTTGGCGGCC
TTGGAGGAAGACGAAGTCCGTCTCCCCAACGAGGACCCTGCTGGGACGGG
CGTGGTGGAGGGAGTCAAGGCTCTGGCCCTCCGGGACCGGGAGGTGCTCG
AGCGAGGTACACGGGCCTTCACCGCCTTCGTCCGCGCCTACAAAGAGCAC
CAATGCCAATTTATTTTCCGCTTTGCCCAGTTGGATTTGGGGGCATTGGC
TCGCGCTTACGGGTTGCTGCGCCTGCCCAAGATGCCAGAGCTCAGTCATC
ATCCCATCGCGGTCGACTTCCAAGAGTGGGCGACTGACACGCGAAGCATT
GAGTACCAAGACAAGAAGAGGGAGGCGGCCAGGAAGATGAGGCTCGCCGA
GGCGGCACGGGAGCGAGACCGGGTCAAGGAGCAGGCGGCGGGGCGGAAAG
TGGTGAGGGGCCGGACGGGGAAAGGGGAGGAGGAGGGGAGGGTCGTGGAG
CCAGGGCAGGAAAAGCGACAGCGGAAGAAGAGGAAGGGGAAGCACCAACA
GATTGTGGAGGAATGGGAGGAGCTTGGTCGGGAAGAAAGGCTCTTCAAGC
GGCTGCGACAGCGTAAGATCAGTCGGGAGGAGTATGAGAAGGAGCTGCGG
AGGAGAGGTAGTGACGAGGAGGGAGAGGGGGAAGCCAGTAATGAGGATGC
CGCCCATGTGTCAGCAGCTTCTGGCAGCGACAGTGATGGCGGCGGCAACG
AAAGCGACGCCGAGCAGGGCGCACAGTCTGCGACTCTCAATGGGATGAGG
ATGTCGGCGCGTCCCAATGGACAGACAAGACCGCCGCCTCAGCTTTCCAA
GAAACAGGGAAAATTTGCACAAAACAATAAAATGAAACAGAAGCAGAAAC
AAAGCCGCCGCGGATGGGTTTCAAGAAAGTGAGAAGGTGAAGGGTGTCGA
AGAGTCATGTCGAGGACCTACTTTCAGACTCAAAGATACATGTCCGGTCG
CGTGCTGCACAAAGGTTAAAAATTTTGGCATTCTTTCAATGCGAGAAGGC
TTTTTTGCGATCAATAGCGTGGTTTGAAATCATTCATTTTAAAACAGAAC
CC

protein sequence of rna4307

>rna4307-protein ID=rna4307-protein|Name=rna4307|organism=Nannochloropsis gaditana|type=polypeptide|length=338bp
MAWRVCRTSASHARRGFVVSLSAPSVSSSVSVMSVPRRWSSTAKVWINKD
TRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTV
EEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVK
VKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGT
LTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIM
IGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISG
GKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAISGKL

mRNA from alignment at CM002463.1:247625..249360+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4307 ID=rna4307|Name=rna4307|organism=Nannochloropsis gaditana|type=mRNA|length=1736bp|location=Sequence derived from alignment at CM002463.1:247625..249360+ (Nannochloropsis gaditana)
TCTTGAATTTCTTGCGATAAAGGAAAGTCTTGAAGGAAGCGAAATACGCC
CGCCGCCATAGACCCCTGAAATTTCAAAGCCTTGTGAGCTTTTCTAGCCA
CCGAAAGGGAAATAAAGGGGACACACAAGTGTACACACGCGTTCTCCTCG
AGGTTTTGTGCTGGTGGCGAGCATTTGTGTCGCATGGAATTGCCTCATAC
GCTCGAGCGAGGTACTGCATCTTGCTCCTGTCTTACGCGTCGTCTTACTT
ATATGATCCCTACAGCACTCCTCTGCGCCTTCGTTGGCCACGATTTTTCC
AAGAATGGCTTGGAGAGTCTGTCGCACCAGCGCCAGCCATGCTCGACGGG
GTTTTGTCGTGTCTTTGTCTGCCCCTTCggtttcttcctctgtctcgGTC
ATGTCCGTGCCACGGCGCTGGAGCTCCACTGCCAAAGTGTGGATAAACAA
GGACACGCGCATCATTGTCCAAGGATTTACAGGGAAGCAAGGGACATTCC
ACTCGCAGCAAGCCATCGACTATTTTGGAACCAAAGTGGTTGGAGGGGTG
ACGCCTAAAAAGGGGGGGACCACGCATCTCGGGCAGCCTGTTTTTGACAC
TGTCGAGGAAGCGGTCCGGGAGCTGAAACCCGACGCCACTGCCATCTacg
tgcctcctcctttctgtgCGTCTGCGATCATTGACGCCATTCAAGCGGAG
ATTCCTCTTGTCGTGGCCATTACCGAGGGCATCCCGCAACAAGATATGGT
TAAGGTCAAGTGGTATCTCAAACAGCAAGTAAGTGCACCCCGCCATCACT
CCATCTTGTTTCCCGTTACATTAATTTACATACATTCTGTGTCTTCGAAC
CCTGAAGTGCAGACCTACGTCGTTACTACGGGTACAGGATAACTTGCACC
CATGAAATGACTTGCGGACTgatctttcctctctcccgtctCGCTCTGTC
ATTTCCCAGACCAAAACCCGGTTGATCGGGCCCAACTGTCCAGGAATCAT
CAAACCTGAGGAGTGCAAGATTGGGATCATGCCCGGCGCTATCCATAAGA
AAGGCAGCATTGGCATTGTCAGTCGCTCCGGGACGTTAACCTACGAGGCA
GTTGCTCAAACCACGGCGGTGGGATTGGGGCAGAGCACATGTGTGGGTAT
AGGTGGGGACCCGTTCAACGGGACCAATTTCATCGACTGTCTGGAAAGAT
TCACGAAAGATCCAGAGACGAAGGGCATCATAATGATCGGGGAGATCGGG
GGCtctgcagaggaggaagcggcggagtGGTTGGAAGCTCACGGAGACGC
GAGCAAGCCGGTCGTGAGCTTCATCGCGGGCTCGACAGCCcctcctggga
ggaggatggggcaCGCGGGCGCGATTATcagtgggggaaaaggcacgGCC
GCTGGGAAATTCGAGGCGTTGGAGAAAGCCGGCGTGCACGTGACACGGTC
ACCGGCGCAACTAGGGACGACCATGCTGAAAGCCATCTCTGGGAAGCTGT
AGAGGCCCGACAGGGGCCGGAAGGACCGATaaggccaggaaggaagggga
tggcaCAAAACTTCGGATTGCATCCACTGCTTATTTGGGACTCGGGATAT
GGTAAACAGCAGTCAAGGACAGGTGGGATGAGCaagctgaagaggaaaga
ggcgacGAATGCGTTTTGGAGATGGGGCCGTGAGGATGTTGTGGCAAGAA
GATCtttaaaaaagaaacaaagaaagggatgagAAC

Coding sequence (CDS) from alignment at CM002463.1:247625..249360+

>rna4307 ID=rna4307|Name=rna4307|organism=Nannochloropsis gaditana|type=CDS|length=2034bp|location=Sequence derived from alignment at CM002463.1:247625..249360+ (Nannochloropsis gaditana)
ATGGCTTGGAGAGTCTGTCGCACCAGCGCCAGCCATGCTCGACGGGGTTT
TGTCGTGTCTTTGTCTGCCCCTTCggtttcttcctctgtctcgGTCATGT
CCGTGCCACGGCGCTGGAGCTCCACTGCCAAAGTGTGGATAAACAAGGAC
ACGCGCATCATTGTCCAAGGATTTACAGGGAAGCAAGGGACATTCCACTC
GCAGCAAGCCATCGACTATTTTGGAACCAAAGTGGTTGGAGGGGTGACGC
CTAAAAAGGGGGGGACCACGCATCTCGGGCAGCCTGTTTTTGACACTGTC
GAGGAAGCGGTCCGGGAGCTGAAACCCGACGCCACTGCCATCTacgtgcc
tcctcctttctgtgCGTCTGCGATCATTGACGCCATTCAAGCGGAGATTC
CTCTTGTCGTGGCCATTACCGAGGGCATCCCGCAACAAGATATGGTTAAG
GTCAAGTGGTATCTCAAACAGCAAACCAAAACCCGGTTGATCGGGCCCAA
CTGTCCAGGAATCATCAAACCTGAGGAGTGCAAGATTGGGATCATGCCCG
GCGCTATCCATAAGAAAGGCAGCATTGGCATTGTCAGTCGCTCCGGGACG
TTAACCTACGAGGCAGTTGCTCAAACCACGGCGGTGGGATTGGGGCAGAG
CACATGTGTGGGTATAGGTGGGGACCCGTTCAACGGGACCAATTTCATCG
ACTGTCTGGAAAGATTCACGAAAGATCCAGAGACGAAGGGCATCATAATG
ATCGGGGAGATCGGGGGCtctgcagaggaggaagcggcggagtGGTTGGA
AGCTCACGGAGACGCGAGCAAGCCGGTCGTGAGCTTCATCGCGGGCTCGA
CAGCCcctcctgggaggaggatggggcaCGCGGGCGCGATTATcagtggg
ggaaaaggcacgGCCGCTGGGAAATTCGAGGCGTTGGAGAAAGCCGGCGT
GCACGTGACACGGTCACCGGCGCAACTAGGGACGACCATGCTGAAAGCCA
TCTCTGGGAAGCTGTAGATGGCTTGGAGAGTCTGTCGCACCAGCGCCAGC
CATGCTCGACGGGGTTTTGTCGTGTCTTTGTCTGCCCCTTCggtttcttc
ctctgtctcgGTCATGTCCGTGCCACGGCGCTGGAGCTCCACTGCCAAAG
TGTGGATAAACAAGGACACGCGCATCATTGTCCAAGGATTTACAGGGAAG
CAAGGGACATTCCACTCGCAGCAAGCCATCGACTATTTTGGAACCAAAGT
GGTTGGAGGGGTGACGCCTAAAAAGGGGGGGACCACGCATCTCGGGCAGC
CTGTTTTTGACACTGTCGAGGAAGCGGTCCGGGAGCTGAAACCCGACGCC
ACTGCCATCTacgtgcctcctcctttctgtgCGTCTGCGATCATTGACGC
CATTCAAGCGGAGATTCCTCTTGTCGTGGCCATTACCGAGGGCATCCCGC
AACAAGATATGGTTAAGGTCAAGTGGTATCTCAAACAGCAAACCAAAACC
CGGTTGATCGGGCCCAACTGTCCAGGAATCATCAAACCTGAGGAGTGCAA
GATTGGGATCATGCCCGGCGCTATCCATAAGAAAGGCAGCATTGGCATTG
TCAGTCGCTCCGGGACGTTAACCTACGAGGCAGTTGCTCAAACCACGGCG
GTGGGATTGGGGCAGAGCACATGTGTGGGTATAGGTGGGGACCCGTTCAA
CGGGACCAATTTCATCGACTGTCTGGAAAGATTCACGAAAGATCCAGAGA
CGAAGGGCATCATAATGATCGGGGAGATCGGGGGCtctgcagaggaggaa
gcggcggagtGGTTGGAAGCTCACGGAGACGCGAGCAAGCCGGTCGTGAG
CTTCATCGCGGGCTCGACAGCCcctcctgggaggaggatggggcaCGCGG
GCGCGATTATcagtgggggaaaaggcacgGCCGCTGGGAAATTCGAGGCG
TTGGAGAAAGCCGGCGTGCACGTGACACGGTCACCGGCGCAACTAGGGAC
GACCATGCTGAAAGCCATCTCTGGGAAGCTGTAG

Synonyms

Publications