EWM26381.1, cds4297 (CDS) Nannochloropsis gaditana

Overview
NameEWM26381.1
Unique Namecds4297
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:247929..248402 +
Alignment locationCM002463.1:248584..249126 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26381.1
Productsuccinyl- ligase subunit mitochondrial precursor
Orig transcript idgnl|cribi|Naga_100031g28.2264.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:247929..248402 +
CM002463.1supercontigCM002463.1:248584..249126 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0048037cofactor binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR017440Cit_synth/succinyl-CoA_lig_AS
IPR005811CoA_ligase
IPR016102Succinyl-CoA_synth-like
IPR016040NAD(P)-bd_dom
IPR003781CoA-bd
IPR005810CoA_lig_alpha
Homology
BLAST of EWM26381.1 vs. NCBI_GenBank
Match: gi|585108391|gb|EWM26381.1| (succinyl- ligase subunit mitochondrial precursor [Nannochloropsis gaditana])

HSP 1 Score: 684.485 bits (1765), Expect = 0.000e+0
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0
Query:    1 MAWRVCRTSASHARRGFVVSLSAPSVSSSVSVMSVPRRWSSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAISGKL 338
            MAWRVCRTSASHARRGFVVSLSAPSVSSSVSVMSVPRRWSSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAISGKL
Sbjct:    1 MAWRVCRTSASHARRGFVVSLSAPSVSSSVSVMSVPRRWSSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAISGKL 338          
BLAST of EWM26381.1 vs. NCBI_GenBank
Match: gi|301121760|ref|XP_002908607.1| (succinyl-CoA ligase subunit alpha, mitochondrial precursor [Phytophthora infestans T30-4] >gi|262103638|gb|EEY61690.1| succinyl-CoA ligase subunit alpha, mitochondrial precursor [Phytophthora infestans T30-4])

HSP 1 Score: 505.368 bits (1300), Expect = 5.407e-178
Identity = 247/327 (75.54%), Postives = 284/327 (86.85%), Query Frame = 0
Query:   12 HARRGFVVSLSAPS-VSSSVSVMSVPRRWSSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAISGK 337
             AR   +VS+ A + V +  +V    R  S++AKVWINKDT++I QGFTGKQGTFHSQQAI+Y GT +VGGVTPKKGG+THLG PVF+TV EA +E   DA+ IYVPPPFCA++II+AI+A+IPLVVAITEGIPQQDMVKVKW+L+ Q+ TRLIGPNCPGIIKP ECK+GIMPG IH+KG IGIVSRSGTLTYEAVAQTTA+GLGQST +GIGGDPFNGTNFIDCLERFT DPET+GIIM+GEIGGSAEEEAAEWL AHGD +KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAAGKF ALE AGV VTRSPA+LG T+ + +  +
Sbjct:   13 EARSKVIVSMFARTPVKTVAAVAQATRSMSASAKVWINKDTKVICQGFTGKQGTFHSQQAIEY-GTNMVGGVTPKKGGSTHLGLPVFNTVAEAKKETGADASVIYVPPPFCAASIIEAIEAKIPLVVAITEGIPQQDMVKVKWHLRNQSTTRLIGPNCPGIIKPGECKMGIMPGYIHQKGKIGIVSRSGTLTYEAVAQTTALGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMVGEIGGSAEEEAAEWLMAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGKFAALEAAGVAVTRSPARLGVTLYEEMQKR 338          
BLAST of EWM26381.1 vs. NCBI_GenBank
Match: gi|695406447|ref|XP_009524111.1| (hypothetical protein PHYSODRAFT_557468 [Phytophthora sojae] >gi|348681578|gb|EGZ21394.1| hypothetical protein PHYSODRAFT_557468 [Phytophthora sojae])

HSP 1 Score: 503.827 bits (1296), Expect = 1.008e-177
Identity = 242/298 (81.21%), Postives = 271/298 (90.94%), Query Frame = 0
Query:   37 RRWSSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAI 334
            R  S++AKVWINKDT++I QGFTGKQGTFHSQQAI+Y GT +VGGVTPKKGG+THLG PVF+TV EA +E   DA+ IYVPPPFCA++II+AI+AEIPLVVAITEGIPQQDMVKVKW+L+ Q KTRLIGPNCPGIIKP ECK+GIMPG IH+KG IGIVSRSGTLTYEAVAQTTA+GLGQST +GIGGDPFNGTNFIDCLERFT DPET+GIIM+GEIGGSAEEEAAEWL AHGD +KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAAGKF ALE AGV VTRSPA+LG T+ + +
Sbjct:   16 RSMSASAKVWINKDTKVICQGFTGKQGTFHSQQAIEY-GTNMVGGVTPKKGGSTHLGLPVFNTVAEAKQETGADASVIYVPPPFCAASIIEAIEAEIPLVVAITEGIPQQDMVKVKWHLRNQNKTRLIGPNCPGIIKPGECKMGIMPGYIHQKGKIGIVSRSGTLTYEAVAQTTALGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMVGEIGGSAEEEAAEWLMAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGKFAALEAAGVAVTRSPARLGATLFEEM 312          
BLAST of EWM26381.1 vs. NCBI_GenBank
Match: gi|675193089|ref|XP_008905429.1| (succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica INRA-310] >gi|566024231|gb|ETI47142.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica P1569] >gi|567961537|gb|ETK87077.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica] >gi|567990260|gb|ETL40492.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica] >gi|568019477|gb|ETL93622.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica] >gi|568049924|gb|ETM46890.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica] >gi|568094820|gb|ETN09596.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica INRA-310] >gi|570327890|gb|ETO75838.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica P1976] >gi|570951679|gb|ETP16936.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica CJ01A1] >gi|970663014|gb|KUG00292.1| Succinyl-CoA ligase subunit alpha-1 [Phytophthora nicotianae])

HSP 1 Score: 503.056 bits (1294), Expect = 2.186e-177
Identity = 242/309 (78.32%), Postives = 275/309 (89.00%), Query Frame = 0
Query:   26 VSSSVSVMSVPRRWSSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAI 334
            V +  +V    R  S++AKVWINKDT++I QGFTGKQGTFHSQQAI+Y GT +VGGVTPKKGG+THLG PVF+TV EA +E   DA+ IYVPPPFCA++II+AI+AEIPLVVAITEGIPQQDMVKVKW+L+ Q+ TRLIGPNCPGIIKP ECK+GIMPG IH+KG +GIVSRSGTLTYEAVAQTTA+GLGQST +GIGGDPFNGTNFIDCLERFT DPET+GIIM+GEIGGSAEEEAAEWL AHGD +KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAAGKF ALE AGV VTRSPA+LG T+ + +
Sbjct:    7 VKTVAAVAQATRSMSASAKVWINKDTKVICQGFTGKQGTFHSQQAIEY-GTNMVGGVTPKKGGSTHLGLPVFNTVAEAKKETGADASVIYVPPPFCAASIIEAIEAEIPLVVAITEGIPQQDMVKVKWHLRNQSTTRLIGPNCPGIIKPGECKMGIMPGYIHQKGKVGIVSRSGTLTYEAVAQTTALGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMVGEIGGSAEEEAAEWLMAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGKFAALEAAGVAVTRSPARLGVTLYEEM 314          
BLAST of EWM26381.1 vs. NCBI_GenBank
Match: gi|570985810|gb|ETP44985.1| (succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Phytophthora parasitica P10297])

HSP 1 Score: 501.516 bits (1290), Expect = 7.135e-177
Identity = 241/309 (77.99%), Postives = 275/309 (89.00%), Query Frame = 0
Query:   26 VSSSVSVMSVPRRWSSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAI 334
            V +  +V    R  S++AKVWINKDT++I QGFTGKQGTFHSQQAI+Y GT +VGGVTPKKGG+THLG PVF+TV EA ++   DA+ IYVPPPFCA++II+AI+AEIPLVVAITEGIPQQDMVKVKW+L+ Q+ TRLIGPNCPGIIKP ECK+GIMPG IH+KG +GIVSRSGTLTYEAVAQTTA+GLGQST +GIGGDPFNGTNFIDCLERFT DPET+GIIM+GEIGGSAEEEAAEWL AHGD +KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAAGKF ALE AGV VTRSPA+LG T+ + +
Sbjct:    7 VKTVAAVAQATRSMSASAKVWINKDTKVICQGFTGKQGTFHSQQAIEY-GTNMVGGVTPKKGGSTHLGLPVFNTVAEAKKDTGADASVIYVPPPFCAASIIEAIEAEIPLVVAITEGIPQQDMVKVKWHLRNQSTTRLIGPNCPGIIKPGECKMGIMPGYIHQKGKVGIVSRSGTLTYEAVAQTTALGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMVGEIGGSAEEEAAEWLMAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGKFAALEAAGVAVTRSPARLGVTLYEEM 314          
BLAST of EWM26381.1 vs. NCBI_GenBank
Match: gi|1214698720|gb|OWZ11674.1| (Succinyl-CoA ligase [Phytophthora megakarya])

HSP 1 Score: 501.13 bits (1289), Expect = 1.181e-176
Identity = 241/309 (77.99%), Postives = 274/309 (88.67%), Query Frame = 0
Query:   26 VSSSVSVMSVPRRWSSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAI 334
            V +   V    R  S++AKVWINKDT++I QGFTGKQGTFHS+QAI+Y GT +VGGVTPKKGG+THLG PVF+TV EA +E   DA+ IYVPPPFCA++II+AI+AEIPLVVAITEGIPQQDMVKVKW+L+ Q+ TRLIGPNCPGIIKP ECK+GIMPG IH+KG +GIVSRSGTLTYEAVAQTTA+GLGQST +GIGGDPFNGTNFIDCLERFT DPET+GIIM+GEIGGSAEEEAAEWL AHGD +KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAAGKF ALE AGV VTRSPA+LG T+ + +
Sbjct:    7 VKTVAVVAQATRSMSASAKVWINKDTKVICQGFTGKQGTFHSEQAIEY-GTNMVGGVTPKKGGSTHLGLPVFNTVAEAKKETGADASVIYVPPPFCAASIIEAIEAEIPLVVAITEGIPQQDMVKVKWHLRNQSTTRLIGPNCPGIIKPGECKMGIMPGYIHQKGKVGIVSRSGTLTYEAVAQTTALGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMVGEIGGSAEEEAAEWLMAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGKFAALEAAGVAVTRSPARLGVTLFEEM 314          
BLAST of EWM26381.1 vs. NCBI_GenBank
Match: gi|953491198|emb|CEG46057.1| (succinyl-ligase [Plasmopara halstedii])

HSP 1 Score: 498.049 bits (1281), Expect = 8.205e-176
Identity = 239/295 (81.02%), Postives = 268/295 (90.85%), Query Frame = 0
Query:   40 SSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAI 334
            S++AKVWINKDT++I QGFTGKQGTFHSQQAIDY GT +VGGVTPKKGG+ HLG PVF+TV EA +E   DA+ IYVPPPFCA++II+AI+AEIPLVVAITEGIPQQDMVKVKW+L+ Q  TRLIGPNCPGIIKP ECK+GIMPG IH+KG IGIVSRSGTLTYEAVAQTTA+GLGQST +GIGGDPFNGTNF+DCLERFT DPET+GIIM+GEIGGSAEEEAAEWL AHGD +KPVVSFIAG+TAPPGRRMGHAGAI+SGGKGTAAGKF ALE AGV VTRSPA+LG T+ + +
Sbjct:    2 SASAKVWINKDTKVICQGFTGKQGTFHSQQAIDY-GTNMVGGVTPKKGGSMHLGLPVFNTVAEAKKETSADASVIYVPPPFCAASIIEAIEAEIPLVVAITEGIPQQDMVKVKWHLRNQRTTRLIGPNCPGIIKPGECKMGIMPGYIHQKGKIGIVSRSGTLTYEAVAQTTALGLGQSTVIGIGGDPFNGTNFVDCLERFTNDPETEGIIMVGEIGGSAEEEAAEWLMAHGDPNKPVVSFIAGTTAPPGRRMGHAGAIVSGGKGTAAGKFAALEAAGVAVTRSPARLGVTLFEEM 295          
BLAST of EWM26381.1 vs. NCBI_GenBank
Match: gi|298705781|emb|CBJ28950.1| (Succinate--CoA ligase (GDP-forming), alpha subunit [Ectocarpus siliculosus])

HSP 1 Score: 486.108 bits (1250), Expect = 1.153e-170
Identity = 236/316 (74.68%), Postives = 276/316 (87.34%), Query Frame = 0
Query:   19 VSLSAPSVSSSVSVMSVPRRWSSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAI 334
            ++L++  V  ++  +S  R  SS+AKVWI+++T++IVQGFTGKQGTFH++QAI+Y G++ VGGVTPKKGG THLG+PVF+TV EA   +KPDA+ +YVPPPF  +A++DAI+ EIPLVV ITEGIPQ+DM KVK  L+QQT TRLIGPNCPGIIKP ECKIGIMPG IHKKG IGIVSRSGTLTYEAV QTT  G+GQSTCVGIGGDPFNGTNFIDCLERFTKDPET+GI+MIGEIGG AEE+AAEWL  HGD +KPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAA KF ALE AGV+++RSPAQLG+TM++A 
Sbjct:    1 MALASRIVGKTLGGVSGGRCMSSSAKVWIDQNTKVIVQGFTGKQGTFHAEQAIEY-GSQYVGGVTPKKGGQTHLGKPVFNTVAEAKEGVKPDASVVYVPPPFAGAAVLDAIENEIPLVVCITEGIPQKDMAKVKHALRQQTATRLIGPNCPGIIKPGECKIGIMPGYIHKKGKIGIVSRSGTLTYEAVWQTTVTGMGQSTCVGIGGDPFNGTNFIDCLERFTKDPETEGIVMIGEIGGQAEEDAAEWLMEHGDPAKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAAKFAALEDAGVYISRSPAQLGSTMVRAF 315          
BLAST of EWM26381.1 vs. NCBI_GenBank
Match: gi|1072231743|gb|OEU16475.1| (mitochondrial succinyl-CoA synthetase alpha subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 478.789 bits (1231), Expect = 9.450e-168
Identity = 243/315 (77.14%), Postives = 275/315 (87.30%), Query Frame = 0
Query:   20 SLSAPSVSSSVSVMSVPRRWSSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAI 334
            S  A  ++++VS  S  R  SSTAKVW++K+TR+I QGFTGKQGTFHS QAI+Y GT +VGGVTP KGG  HLG PVF+TV EAV ELKPDA+ IYVPPPFCA+AI+DAI+AEIPLVVAITEG+PQQDM +VK+ L+QQ+ TRLIGPNCPGIIKP ECKIGIMPG IH KG IG+VSRSGTLTYEAV QTT  GLGQST VGIGGDPFNGTNFIDCLERFT DPET+GIIMIGEIGG+AEEEAAEWL+ +GD +KPVV FIAG+TAPPGRRMGHAGAI++GGKG AA KFEALE AGVH++RSPAQLG TMLKA+
Sbjct:    5 SAFASKIATAVSRPSASRSMSSTAKVWVDKNTRVICQGFTGKQGTFHSTQAIEY-GTNMVGGVTPNKGGQEHLGLPVFNTVAEAVDELKPDASVIYVPPPFCAAAIMDAIEAEIPLVVAITEGVPQQDMARVKYALRQQSATRLIGPNCPGIIKPGECKIGIMPGYIHTKGKIGVVSRSGTLTYEAVHQTTIAGLGQSTVVGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGNAEEEAAEWLKEYGDPNKPVVGFIAGTTAPPGRRMGHAGAIVAGGKGGAAEKFEALESAGVHISRSPAQLGNTMLKAM 318          
BLAST of EWM26381.1 vs. NCBI_GenBank
Match: gi|673034508|ref|XP_008871215.1| (succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Aphanomyces invadans] >gi|574473186|gb|ETW00190.1| succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Aphanomyces invadans])

HSP 1 Score: 472.626 bits (1215), Expect = 1.722e-165
Identity = 242/301 (80.40%), Postives = 266/301 (88.37%), Query Frame = 0
Query:   37 RRWSSTAKVWINKDTRIIVQGFTGKQGTFHSQQAIDYFGTKVVGGVTPKKGGTTHLGQPVFDTVEEAVRELKPDATAIYVPPPFCASAIIDAIQAEIPLVVAITEGIPQQDMVKVKWYLKQQTKTRLIGPNCPGIIKPEECKIGIMPGAIHKKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLERFTKDPETKGIIMIGEIGGSAEEEAAEWLEAHGDASKPVVSFIAGSTAPPGRRMGHAGAIISGGKGTAAGKFEALEKAGVHVTRSPAQLGTTMLKAISGK 337
            RR S++AKVWINKDT++I QGFTGKQGTFHS+QAI Y GT  VGGVTPKKGGTTHLG PVF+TV+EA  E+  +A+ IYVPPP+CA AIIDAI AEIPL+VAITEGIPQQDMVKVKW+LKQQ  +RLIGPNCPGIIKP ECK+GIMPG IH KG IGIVSRSGTLTYEAV QTT  GLGQST +GIGGDPFNGTNFIDCLERFT DPET+GIIMIGEIGG+AEEEAAEWL  HGD +KPVVSFIAG TAPPGRRMGHAGAI+SGGKGTA GKF ALEKAGV VTRSPA+LGTTML+  + +
Sbjct:   10 RRMSASAKVWINKDTKVICQGFTGKQGTFHSEQAIAY-GTNYVGGVTPKKGGTTHLGLPVFNTVQEAKDEVGAEASIIYVPPPYCAQAIIDAIHAEIPLIVAITEGIPQQDMVKVKWHLKQQKTSRLIGPNCPGIIKPGECKMGIMPGYIHSKGKIGIVSRSGTLTYEAVHQTTTTGLGQSTVIGIGGDPFNGTNFIDCLERFTNDPETEGIIMIGEIGGTAEEEAAEWLMEHGDPNKPVVSFIAGITAPPGRRMGHAGAIVSGGKGTAEGKFAALEKAGVTVTRSPARLGTTMLQQFAKR 309          
The following BLAST results are available for this feature:
BLAST of EWM26381.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108391|gb|EWM26381.1|0.000e+0100.00succinyl- ligase subunit mitochondrial precursor [... [more]
gi|301121760|ref|XP_002908607.1|5.407e-17875.54succinyl-CoA ligase subunit alpha, mitochondrial p... [more]
gi|695406447|ref|XP_009524111.1|1.008e-17781.21hypothetical protein PHYSODRAFT_557468 [Phytophtho... [more]
gi|675193089|ref|XP_008905429.1|2.186e-17778.32succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
gi|570985810|gb|ETP44985.1|7.135e-17777.99succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
gi|1214698720|gb|OWZ11674.1|1.181e-17677.99Succinyl-CoA ligase [Phytophthora megakarya][more]
gi|953491198|emb|CEG46057.1|8.205e-17681.02succinyl-ligase [Plasmopara halstedii][more]
gi|298705781|emb|CBJ28950.1|1.153e-17074.68Succinate--CoA ligase (GDP-forming), alpha subunit... [more]
gi|1072231743|gb|OEU16475.1|9.450e-16877.14mitochondrial succinyl-CoA synthetase alpha subuni... [more]
gi|673034508|ref|XP_008871215.1|1.722e-16580.40succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4307rna4307Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications