rna4306, rna4306 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4306
Unique Name	rna4306
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2035
Alignment location	CM002463.1:244692..247176 +

Link to JBrowse

Properties


Property Name	Value
Product	atp-dependent rna helicase ddx55
Orig transcript id	gnl\|cribi\|Naga_100031g29.2243.mrna
Orig protein id	gnl\|cribi\|Naga_100031g29.2243
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:244692..247176 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100031g29	gene4150	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4306	rna4306-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26360.1	cds4296	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:244692..247176+
coding sequence from alignment at CM002463.1:244692..247176+

mRNA sequence

>rna4306 ID=rna4306|Name=rna4306|organism=Nannochloropsis gaditana|type=mRNA|length=2035bp
CCGCCATTGACAAAGAAGTAAAGAAAAAAATATTGCGACCAACCCGTCAC
GAACTTCAAAGTCATACAGGTGGTCAGAATGAGCCATTCAACCAGCTTTT
TCACGCGGCCACGCTTTATGCTGCGGCGAAAATGGGGCCATCACGATGAA
AGGGAAGCTCGATATGGAACTAAACCAAGCGCGGAAAGCAATAGCAGCGA
AACACCAAACTCCTTTTTCAGGGGTTCATGGCGAACCAGCACGAGCTGGG
CTCCATTTTCTCAAGTGTATAATGGGGCCAGCACCTCATCGATGGTCCCT
GGTAACGAAGCCTGCCAATATGATCAACAAGACACAGGACACTTCCCTTC
CTCGGACCCCAGCATCCCGGAGGCAACCACTCCGCATTGGCCTCCCTCGC
ATCCTCACCAGCGCCAAACTGCATGCTCACCTATTGATAGCAACTTCTGG
CATTTCGTGGATCGTGTCATCTTCACACGAGAGGAAGTGCGAGGACGAGC
CCCTCTAATTAAGCTCGTCGACGGCATCCGCTCTGAACGCTACTTGATAA
ACTGCTACGGCCAGACGCAGATCGATAAATTGCTGGCTCCCATCGACACA
AAAGCAGACTATATCCATCTACCACGTGGGCTGAGTGGAAGACCGCTTGT
AAAATGGGTTTCCATGTCAGAGTTTCGAGGCATGTGCGCATCGTTAACTC
CCATCCCATCCCCATCGGCTGTGTCAATGGGGTTCAGGAAAGGAGTCTTG
GCAGAAAGCTCTTCGCCTGTGGCGGGCTACGCATTTTCACCCAAACGCCA
TCGCGGTGAAGGATATAGCCATGATCAAAGTGCCGCACCCCGTGCGCTTG
TCGAGGGAGGCGACCCTTCCACCTGTTTCCGCGAAAGTCACTCGACGCCG
TTGCCCCCACCGTCCATCGCAGCGGGCATAAACATGGACAAGCAGAAACT
CTTAGAACACCTGCAACAGATATCAGACGAATACTTGGCGGACGATGGAG
CCACGACGGCGGCGTTGGAAGCGGAGGCGCGCGTGGAGGGAGTGTTGGGT
GGTTTTGGTGGGGCGAGAGATCCGCTCCGGCATGCTCTGGCCGCCGTGGA
GGAGACCTTACGGAAGCACTCCGCAGCCCGGAGAGAGGCTGGAGGGAAAG
ATTGGAGGGATCGAGCGGCGGAGATTGAGGCACGCATGGTCAAGGACGTG
AAGGAGGAGATGGTTCGCGCTCGAATGTCGTCCTTGGCGCCCGCCGAGGT
AAAAGAGGTGCACCACGTGCTTCGGCAAGGAAAAGCGACCGACGTGGTCG
CACGTGGCTTCAATGTCGACATGCGCAGACAAGATTTACAGACTTGCAAC
CCTGGAACGTGGCTGAATGACGAGGTGATCAATTTCTTTATGAGCCTGCT
GAAGGAGCGGGATGATAGCTTCTGCGCGGCCGCAGCCGCACGCGGGGTAG
AGCGCCGGAAAAATTGGTTTTTCAACTCCTTTTTCATGTCAAAACTGCTG
GATGACAACAACGGGTATAAATATGCAAATGTTCGACGATGGTCTCGCAA
GGCTGGGGATCTCTTCAGCTACGATAAAGTCTTCTTCCCGGTGAACATTC
GGAATACCCATTGGTGCCTGGCCGTCATATATATGCAGGAGAAGAAAATA
CAGTACTTTGACAGTTTGGTTGGGACAGGTCGGGAGTACCTTGTGGCACT
CCGCCAATATATAGCGGATGAGCATCAGGATAAGAAAAAAAGCGCTTTGG
ATATCAGTGACTGGGAGCTCGTTTCATCAGATCGGCAGGTGGTACCTCAG
CAAGGGAACGGTGCAGACTGTGGATGCTTTGCCTCGGCGTTCGCATATCT
TTTGAGCGAAGACCTACCTATCAATTATATCTCTCAAGCAGATATGCCCG
CCTTTCGGCAGCGTCTCGTCTACAGTATCGTAAAAAAGGCGCTAACCTGG
AACGGTGAGGACGCATGACGAGGGTGGGAGGTTGTTGGTTTTGGTGCAAG
CAATCACAAAGTAAAAAAAACTTCCTGACACTGTC

protein sequence of rna4306

>rna4306-protein ID=rna4306-protein|Name=rna4306|organism=Nannochloropsis gaditana|type=polypeptide|length=718bp
MTASSPDGDNSPHRLAFQAMIPSLHERTLAAVAALNFTQMTPVQASTIPL
FLTNKDVCVEAVTGSGKTLAFVIPAVEMILRRKSPLKKHEVGAIIISPTR
ELAKQILKVTTHFCSHTGLRPPLLLVGGTDIVGDNFKRFSQDGADILVGT
PGRLHDVLERYGHAIGVRELEVLILDEADTLLNMGFKATLTAILDHLPKQ
RRTGLFSATQTREVRQLARAGMRNPATVAVQVVNQQTREVQATPQTLLNF
HWTCARPEEKLGRLLAFLSRHREKKVMVFFITCAAVDYFARILTQHPAFR
RVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASE
GGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGR
SLTFLLEAEEPYVEFLRLKGVPLAALEEDEVRLPNEDPAGTGVVEGVKAL
ALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRL
PKMPELSHHPIAVDFQEWATDTRSIEYQDKKREAARKMRLAEAARERDRV
KEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEEL
GREERLFKRLRQRKISREEYEKELRRRGSDEEGEGEASNEDAAHVSAASG
SDSDGGGNESDAEQGAQSATLNGMRMSARPNGQTRPPPQLSKKQGKFAQN
NKMKQKQKQSRRGWVSRK

mRNA from alignment at CM002463.1:244692..247176+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4306 ID=rna4306|Name=rna4306|organism=Nannochloropsis gaditana|type=mRNA|length=2485bp|location=Sequence derived from alignment at CM002463.1:244692..247176+ (Nannochloropsis gaditana)
ACGGTTTTTAATTAGAGGCTTGGCCATGACTGCGAGTAGTCCGGACGGCG
ACAACAGCCCTCATCGCTTGGCTTTTCAGGTACGTCTGCCCAGTGCGCGC
AGAGCCGCTCCTGTACGAGGTAGTATCCTGATGGACCCCCCTTTATGCAA
TATGATGTTACCGTAGCCACTTATGTGTTCTGACACGGCCCATCGAATCC
CCTATACACCAGGCTATGATCCCCTCACTTCATGAAAGGACCCTTGCTGC
CGTTGCCGCTCTGAATTTTACGCAAATGACTCCAGTgcaggcctccacca
tcccccttttcctcacgAACAAAGACGTCTGTGTCGAAGCTGTCACAGGC
TCTGGCAAAACGCTGGCCTTCGTTATCCCGGCTGTGGAGATGATTCTCCG
ACGGAAATCCCCTTTGAAGAAACATGAAGTAGGTGCGATCATCATTTCAC
CCACCCGGGAACTGGCCAAACAAATATTGAAAGTAACGACGCATTTTTGT
AGCCACACGGGATTACGCCCACCCTTGCTTCTGGTGGGTGGTACAGACAT
TGTCGGCGACAACTTTAAGCGCTTTAGTCAGGACGGAGCGGACATCTTAG
TCGGCACCCCCGGGCGTTTGCACGACGTCTTGGAGCGCTACGGGCATGCG
ATTGGTGTGCGAGAGCTCGAAGTGCTGATACTGGACGAGGCTGACACCTT
GCTAAACATGGGGTTTAAAGCCACGCTCACGGCCATCCTGGACCACCTGC
CGAAGCAGCGCAGGACTGGCTTGTTTTCCGCGACGCAAACCCGTGAAGTC
CGGCAGCTCGCCCGGGCTGGGATGCGGAACCCTGCCACGGTCGCCGTCCA
GGTGGTGAACCAGCAGACTCGAGAGGTGCAAGCCACGCCCCAGACCCTCT
TGAATTTTCATTGGACGTGCGCGCGGCCGGAGGAAAAGCTGGGCAGGTTG
TTAGCCTTCTTGTCCCGGCAccgggaaaagaaagtgaTGGTGTTTTTCAT
CACGTGTGCGGCTGTGGATTATTTCGCGAGGATTCTGACCCAACACCCCG
CCTTCAGACGGGTCTTGGGCACGGaccaaggggaagggaatgggaagaaa
cggaaggtgggagggcttCAGGGGAGTCGCGTGGCCGTACTCCACGGGAA
AATGGtgcagaaaaagagggatggGATGCTTGCCCGTTTCACACAGGCGG
CCTCcgaagggggcggggtctTGCTCTGCACGGACGTGGCGGCACGCGGC
TTGGATGTCCCGGACGTGGACTGGATCGTCCAATACGAGCCCCCTCAGGA
CCCGTCCTTTTTCATCCACcgggtgggaaggacggctCGGGCAGGCAGGG
TGGGGCGTTCCCTGACTTTCTtgctggaggcagaggagcCCTACGTGGAA
TTTTTGCGCCTGAAGGGCGTCCccttggcggccttggaggaagacgaagt
cCGTCTCCCCAACGAGGACCCTGCTGGgacgggcgtggtggagggagtcA
AGGCTCTGGCCCTCCGGGACCGGGAGGTGCTCGAGCGAGGTACACGGGCC
TTCACCGCCTTCGTCCGCGCCTACAAAGAGCACCAATGCCAATTTATTTT
CCGCTTTGCCCAGTTGGATTTGGGGGCATTGGCTCGCGCTTACGGGTTGC
TGCGCCTGCCCAAGATGCCAGAGCTCAGTCATCATCCCATCGCGGTCGAC
TTCCAAGAGTGGGCGACTGACACGCGAAGCATTGAGTACCAagacaagaa
gagggaggcggccaggaaGATGAGGCTCGCCGAGGCGGCACGGGAGCGAG
ACCGGGTcaaggagcaggcggcgggGCGGAAAGTGGTGAGGGGCCggacg
gggaaaggggaggaggaggggagggtcgtGGAGCCAGGGCAGGAAAAGCG
acagcggaagaagaggaaggggaagcaccAACAGATTgtggaggaatggg
aggagcTTGGTCGGGAAGAAAGGCTCTTCAAGCGGCTGCGACAGCGTAAG
ATCAGTCGGGAGGAGTATGAGAAGGAGCTGCGGAGGAGAGGtagtgacga
ggagggagagggggaagccaGTAATGAGGATGCCGCCCATGTGTCAGCAG
CTTCTGGCAGCGACAGTGATGGCGGCGGCAACGAAAGCGACGCCGAGCAG
GGCGCACAGTCTGCGACTCTCAATGGGATGAGGATGTCGGCGCGTCCCAA
TGGACAGACAAGACCGCCGCCTCAGCTTTCCAAGAAACAGGGAAAATTTG
CACAAAACAATAAAATGAAACAGAAGCAGAAACAAAGCCGCCGCGGATGG
GTTTCAAGAAAGTGAGAAGGTGAAGGGTGTCGAAGAGTCATGTCGAGGAC
CTACTTTCAGACTCAAAGATACATGTCCGGTCGCGTGCTGCACAAAGGTT
AAAAATTTTGGCATTCTTTCAATGCGAGAAGGCTTTTTTGCGATCAATAG
CGTGGTTTGAAATCATTCATTTTAAAACAGAACCC

Coding sequence (CDS) from alignment at CM002463.1:244692..247176+

>rna4306 ID=rna4306|Name=rna4306|organism=Nannochloropsis gaditana|type=CDS|length=4314bp|location=Sequence derived from alignment at CM002463.1:244692..247176+ (Nannochloropsis gaditana)
ATGACTGCGAGTAGTCCGGACGGCGACAACAGCCCTCATCGCTTGGCTTT
TCAGGCTATGATCCCCTCACTTCATGAAAGGACCCTTGCTGCCGTTGCCG
CTCTGAATTTTACGCAAATGACTCCAGTgcaggcctccaccatccccctt
ttcctcacgAACAAAGACGTCTGTGTCGAAGCTGTCACAGGCTCTGGCAA
AACGCTGGCCTTCGTTATCCCGGCTGTGGAGATGATTCTCCGACGGAAAT
CCCCTTTGAAGAAACATGAAGTAGGTGCGATCATCATTTCACCCACCCGG
GAACTGGCCAAACAAATATTGAAAGTAACGACGCATTTTTGTAGCCACAC
GGGATTACGCCCACCCTTGCTTCTGGTGGGTGGTACAGACATTGTCGGCG
ACAACTTTAAGCGCTTTAGTCAGGACGGAGCGGACATCTTAGTCGGCACC
CCCGGGCGTTTGCACGACGTCTTGGAGCGCTACGGGCATGCGATTGGTGT
GCGAGAGCTCGAAGTGCTGATACTGGACGAGGCTGACACCTTGCTAAACA
TGGGGTTTAAAGCCACGCTCACGGCCATCCTGGACCACCTGCCGAAGCAG
CGCAGGACTGGCTTGTTTTCCGCGACGCAAACCCGTGAAGTCCGGCAGCT
CGCCCGGGCTGGGATGCGGAACCCTGCCACGGTCGCCGTCCAGGTGGTGA
ACCAGCAGACTCGAGAGGTGCAAGCCACGCCCCAGACCCTCTTGAATTTT
CATTGGACGTGCGCGCGGCCGGAGGAAAAGCTGGGCAGGTTGTTAGCCTT
CTTGTCCCGGCAccgggaaaagaaagtgaTGGTGTTTTTCATCACGTGTG
CGGCTGTGGATTATTTCGCGAGGATTCTGACCCAACACCCCGCCTTCAGA
CGGGTCTTGGGCACGGaccaaggggaagggaatgggaagaaacggaaggt
gggagggcttCAGGGGAGTCGCGTGGCCGTACTCCACGGGAAAATGGtgc
agaaaaagagggatggGATGCTTGCCCGTTTCACACAGGCGGCCTCcgaa
gggggcggggtctTGCTCTGCACGGACGTGGCGGCACGCGGCTTGGATGT
CCCGGACGTGGACTGGATCGTCCAATACGAGCCCCCTCAGGACCCGTCCT
TTTTCATCCACcgggtgggaaggacggctCGGGCAGGCAGGGTGGGGCGT
TCCCTGACTTTCTtgctggaggcagaggagcCCTACGTGGAATTTTTGCG
CCTGAAGGGCGTCCccttggcggccttggaggaagacgaagtcCGTCTCC
CCAACGAGGACCCTGCTGGgacgggcgtggtggagggagtcAAGGCTCTG
GCCCTCCGGGACCGGGAGGTGCTCGAGCGAGGTACACGGGCCTTCACCGC
CTTCGTCCGCGCCTACAAAGAGCACCAATGCCAATTTATTTTCCGCTTTG
CCCAGTTGGATTTGGGGGCATTGGCTCGCGCTTACGGGTTGCTGCGCCTG
CCCAAGATGCCAGAGCTCAGTCATCATCCCATCGCGGTCGACTTCCAAGA
GTGGGCGACTGACACGCGAAGCATTGAGTACCAagacaagaagagggagg
cggccaggaaGATGAGGCTCGCCGAGGCGGCACGGGAGCGAGACCGGGTc
aaggagcaggcggcgggGCGGAAAGTGGTGAGGGGCCggacggggaaagg
ggaggaggaggggagggtcgtGGAGCCAGGGCAGGAAAAGCGacagcgga
agaagaggaaggggaagcaccAACAGATTgtggaggaatgggaggagcTT
GGTCGGGAAGAAAGGCTCTTCAAGCGGCTGCGACAGCGTAAGATCAGTCG
GGAGGAGTATGAGAAGGAGCTGCGGAGGAGAGGtagtgacgaggagggag
agggggaagccaGTAATGAGGATGCCGCCCATGTGTCAGCAGCTTCTGGC
AGCGACAGTGATGGCGGCGGCAACGAAAGCGACGCCGAGCAGGGCGCACA
GTCTGCGACTCTCAATGGGATGAGGATGTCGGCGCGTCCCAATGGACAGA
CAAGACCGCCGCCTCAGCTTTCCAAGAAACAGGGAAAATTTGCACAAAAC
AATAAAATGAAACAGAAGCAGAAACAAAGCCGCCGCGGATGGGTTTCAAG
AAAGTGAATGACTGCGAGTAGTCCGGACGGCGACAACAGCCCTCATCGCT
TGGCTTTTCAGGCTATGATCCCCTCACTTCATGAAAGGACCCTTGCTGCC
GTTGCCGCTCTGAATTTTACGCAAATGACTCCAGTgcaggcctccaccat
cccccttttcctcacgAACAAAGACGTCTGTGTCGAAGCTGTCACAGGCT
CTGGCAAAACGCTGGCCTTCGTTATCCCGGCTGTGGAGATGATTCTCCGA
CGGAAATCCCCTTTGAAGAAACATGAAGTAGGTGCGATCATCATTTCACC
CACCCGGGAACTGGCCAAACAAATATTGAAAGTAACGACGCATTTTTGTA
GCCACACGGGATTACGCCCACCCTTGCTTCTGGTGGGTGGTACAGACATT
GTCGGCGACAACTTTAAGCGCTTTAGTCAGGACGGAGCGGACATCTTAGT
CGGCACCCCCGGGCGTTTGCACGACGTCTTGGAGCGCTACGGGCATGCGA
TTGGTGTGCGAGAGCTCGAAGTGCTGATACTGGACGAGGCTGACACCTTG
CTAAACATGGGGTTTAAAGCCACGCTCACGGCCATCCTGGACCACCTGCC
GAAGCAGCGCAGGACTGGCTTGTTTTCCGCGACGCAAACCCGTGAAGTCC
GGCAGCTCGCCCGGGCTGGGATGCGGAACCCTGCCACGGTCGCCGTCCAG
GTGGTGAACCAGCAGACTCGAGAGGTGCAAGCCACGCCCCAGACCCTCTT
GAATTTTCATTGGACGTGCGCGCGGCCGGAGGAAAAGCTGGGCAGGTTGT
TAGCCTTCTTGTCCCGGCAccgggaaaagaaagtgaTGGTGTTTTTCATC
ACGTGTGCGGCTGTGGATTATTTCGCGAGGATTCTGACCCAACACCCCGC
CTTCAGACGGGTCTTGGGCACGGaccaaggggaagggaatgggaagaaac
ggaaggtgggagggcttCAGGGGAGTCGCGTGGCCGTACTCCACGGGAAA
ATGGtgcagaaaaagagggatggGATGCTTGCCCGTTTCACACAGGCGGC
CTCcgaagggggcggggtctTGCTCTGCACGGACGTGGCGGCACGCGGCT
TGGATGTCCCGGACGTGGACTGGATCGTCCAATACGAGCCCCCTCAGGAC
CCGTCCTTTTTCATCCACcgggtgggaaggacggctCGGGCAGGCAGGGT
GGGGCGTTCCCTGACTTTCTtgctggaggcagaggagcCCTACGTGGAAT
TTTTGCGCCTGAAGGGCGTCCccttggcggccttggaggaagacgaagtc
CGTCTCCCCAACGAGGACCCTGCTGGgacgggcgtggtggagggagtcAA
GGCTCTGGCCCTCCGGGACCGGGAGGTGCTCGAGCGAGGTACACGGGCCT
TCACCGCCTTCGTCCGCGCCTACAAAGAGCACCAATGCCAATTTATTTTC
CGCTTTGCCCAGTTGGATTTGGGGGCATTGGCTCGCGCTTACGGGTTGCT
GCGCCTGCCCAAGATGCCAGAGCTCAGTCATCATCCCATCGCGGTCGACT
TCCAAGAGTGGGCGACTGACACGCGAAGCATTGAGTACCAagacaagaag
agggaggcggccaggaaGATGAGGCTCGCCGAGGCGGCACGGGAGCGAGA
CCGGGTcaaggagcaggcggcgggGCGGAAAGTGGTGAGGGGCCggacgg
ggaaaggggaggaggaggggagggtcgtGGAGCCAGGGCAGGAAAAGCGa
cagcggaagaagaggaaggggaagcaccAACAGATTgtggaggaatggga
ggagcTTGGTCGGGAAGAAAGGCTCTTCAAGCGGCTGCGACAGCGTAAGA
TCAGTCGGGAGGAGTATGAGAAGGAGCTGCGGAGGAGAGGtagtgacgag
gagggagagggggaagccaGTAATGAGGATGCCGCCCATGTGTCAGCAGC
TTCTGGCAGCGACAGTGATGGCGGCGGCAACGAAAGCGACGCCGAGCAGG
GCGCACAGTCTGCGACTCTCAATGGGATGAGGATGTCGGCGCGTCCCAAT
GGACAGACAAGACCGCCGCCTCAGCTTTCCAAGAAACAGGGAAAATTTGC
ACAAAACAATAAAATGAAACAGAAGCAGAAACAAAGCCGCCGCGGATGGG
TTTCAAGAAAGTGA

Synonyms

Publications