EWM26360.1, cds4296 (CDS) Nannochloropsis gaditana

Overview
NameEWM26360.1
Unique Namecds4296
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:244717..244770 +
Alignment locationCM002463.1:244904..247006 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26360.1
Productatp-dependent rna helicase ddx55
Orig transcript idgnl|cribi|Naga_100031g29.2243.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:244717..244770 +
CM002463.1supercontigCM002463.1:244904..247006 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
IPR011545DEAD/DEAH_box_helicase_dom
IPR025313DUF4217
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
Homology
BLAST of EWM26360.1 vs. NCBI_GenBank
Match: gi|585108370|gb|EWM26360.1| (atp-dependent rna helicase ddx55 [Nannochloropsis gaditana])

HSP 1 Score: 1467.21 bits (3797), Expect = 0.000e+0
Identity = 718/718 (100.00%), Postives = 718/718 (100.00%), Query Frame = 0
Query:    1 MTASSPDGDNSPHRLAFQAMIPSLHERTLAAVAALNFTQMTPVQASTIPLFLTNKDVCVEAVTGSGKTLAFVIPAVEMILRRKSPLKKHEVGAIIISPTRELAKQILKVTTHFCSHTGLRPPLLLVGGTDIVGDNFKRFSQDGADILVGTPGRLHDVLERYGHAIGVRELEVLILDEADTLLNMGFKATLTAILDHLPKQRRTGLFSATQTREVRQLARAGMRNPATVAVQVVNQQTREVQATPQTLLNFHWTCARPEEKLGRLLAFLSRHREKKVMVFFITCAAVDYFARILTQHPAFRRVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRLKGVPLAALEEDEVRLPNEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVDFQEWATDTRSIEYQDKKREAARKMRLAEAARERDRVKEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKELRRRGSDEEGEGEASNEDAAHVSAASGSDSDGGGNESDAEQGAQSATLNGMRMSARPNGQTRPPPQLSKKQGKFAQNNKMKQKQKQSRRGWVSRK 718
            MTASSPDGDNSPHRLAFQAMIPSLHERTLAAVAALNFTQMTPVQASTIPLFLTNKDVCVEAVTGSGKTLAFVIPAVEMILRRKSPLKKHEVGAIIISPTRELAKQILKVTTHFCSHTGLRPPLLLVGGTDIVGDNFKRFSQDGADILVGTPGRLHDVLERYGHAIGVRELEVLILDEADTLLNMGFKATLTAILDHLPKQRRTGLFSATQTREVRQLARAGMRNPATVAVQVVNQQTREVQATPQTLLNFHWTCARPEEKLGRLLAFLSRHREKKVMVFFITCAAVDYFARILTQHPAFRRVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRLKGVPLAALEEDEVRLPNEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVDFQEWATDTRSIEYQDKKREAARKMRLAEAARERDRVKEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKELRRRGSDEEGEGEASNEDAAHVSAASGSDSDGGGNESDAEQGAQSATLNGMRMSARPNGQTRPPPQLSKKQGKFAQNNKMKQKQKQSRRGWVSRK
Sbjct:    1 MTASSPDGDNSPHRLAFQAMIPSLHERTLAAVAALNFTQMTPVQASTIPLFLTNKDVCVEAVTGSGKTLAFVIPAVEMILRRKSPLKKHEVGAIIISPTRELAKQILKVTTHFCSHTGLRPPLLLVGGTDIVGDNFKRFSQDGADILVGTPGRLHDVLERYGHAIGVRELEVLILDEADTLLNMGFKATLTAILDHLPKQRRTGLFSATQTREVRQLARAGMRNPATVAVQVVNQQTREVQATPQTLLNFHWTCARPEEKLGRLLAFLSRHREKKVMVFFITCAAVDYFARILTQHPAFRRVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRLKGVPLAALEEDEVRLPNEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVDFQEWATDTRSIEYQDKKREAARKMRLAEAARERDRVKEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKELRRRGSDEEGEGEASNEDAAHVSAASGSDSDGGGNESDAEQGAQSATLNGMRMSARPNGQTRPPPQLSKKQGKFAQNNKMKQKQKQSRRGWVSRK 718          
BLAST of EWM26360.1 vs. NCBI_GenBank
Match: gi|224001628|ref|XP_002290486.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973908|gb|EED92238.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 538.11 bits (1385), Expect = 0.000e+0
Identity = 293/618 (47.41%), Postives = 402/618 (65.05%), Query Frame = 0
Query:   17 FQAMIPSLHERTLAAVA--ALNFTQMTPVQASTIPLFLTNKDVCVEAVTGSGKTLAFVIPAVEMILRRKSPLKKHEVGAIIISPTRELAKQILKVTTHFCSHTGLRPPLLLVGGTDI--VGDNFKRFSQDGADILVGTPGRLHDVLERYGHAIGVRELEVLILDEADTLLNMGFKATLTAILDHLPKQRRTGLFSATQTREVRQLA-RAGMRNPATVAVQV---VNQQTREVQATPQTLLNFHWTCARPEEKLGRLLAFLSRHREKKVMVFFITCAAVDYFARILTQHPAFRRVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRLKGVPLAALEEDEVRLPNEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVDFQEWA--TDTRSIEYQDKKREAARKMRLAE--AARERDRVKEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEK 622
            F ++ P L    L  +     NF   TPVQ++TIPLFLT+ DV V AVTGSGKTLAF+IP VEMILRR   LK H+VGA+++ PTRELA+Q   V    C   G+  PLLLVGG  +  V  + ++F +  +DI++GTPGR+ DVL R+ + I V ELEVLILDE+D LL+MGF+ TLT+IL  LP+ RRTGLFSAT T  V++L  ++GMRNP  V V V   V  +    QATP +L N+ +  +  +EKL RLL+FL++H  +KV+VFF+TCA V+Y++ +L                   K+ K+   +G     LHGK+VQK+R+  + RF +     G  LLCTDVAARGLD+ DV W +Q++ P DPS ++HRVGR+ARAGRVG+SL FL   EE YV+FLRL+ VP+  LE+DEV     +     V+  ++ L L+DR+VLE+GT+A+T+++RAYKEH C FIFRFA LDLG LA ++ LLRLPKMPEL      ++FQ      +  +I + DK REAAR+ RLA   AA  ++  + +A  R   R R  K   +  +     + R   K++G+  +I +EW+EL +EERL+K+LR  KI++EEY++
Sbjct:    1 FTSINPPLSPSILTFLTKPPYNFPTPTPVQSTTIPLFLTHHDVFVRAVTGSGKTLAFLIPVVEMILRRTVLLKGHQVGALVLEPTRELARQTFSVCRDLCGECGMNEPLLLVGGASVSAVAHDLQQFQKLKSDIVIGTPGRVEDVLTRFDN-IDVSELEVLILDESDVLLDMGFEVTLTSILSRLPRMRRTGLFSATNTSGVKKLCVKSGMRNPVVVDVAVSAIVKSKGNSQQATPSSLTNY-YIISPLDEKLSRLLSFLTQHSNEKVIVFFLTCACVEYYSSVL-------------------KELKL-PCKGYEYEALHGKLVQKRREKAMERFREKTE--GSALLCTDVAARGLDISDVSWTIQFDAPVDPSSYVHRVGRSARAGRVGKSLVFLTRKEEAYVDFLRLRKVPVRELEDDEVS--GSNVFVPDVLPSIRKLVLKDRDVLEKGTKAYTSYIRAYKEHHCGFIFRFASLDLGVLATSFSLLRLPKMPELRDKLGKLNFQAAGPEINIHAIPFLDKTREAARQKRLAAELAAGGKNAKQIKAEERAAERIRKQKERRQAEIA----KGRNPNKKRGRQARIFDEWDELAKEERLYKKLRTNKITKEEYDR 588          
BLAST of EWM26360.1 vs. NCBI_GenBank
Match: gi|298714126|emb|CBJ27307.1| (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 531.946 bits (1369), Expect = 7.649e-178
Identity = 293/590 (49.66%), Postives = 386/590 (65.42%), Query Frame = 0
Query:   48 IPLFLTNKDVCVEAVTGSGKTLAFVIPAVEMILRRKSPLKKHEVGAIIISPTRELAKQILKVTTHFCSHTGLRPPLLLVGGTDIVGDNFKRFSQDGADILVGTPGRLHDVLERYGHAIGVRELEVLILDEADTLLNMGFKATLTAILDHLPKQRRTGLFSATQTREVRQLARAGMRNPATVAVQVVNQQT---------REVQATPQTLLNFHWTCARPEEKLGRLLAFL-SRHREKKVMVFFITCAAVDYFARILTQHPAFRRVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRLKGVPLAALEEDEVRLPNEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVDFQ-EWATDTRSIEYQDKKREAARKMRLAEAARERDRVKEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKELRR 626
            +PLF+ NKDVCVEAVTGSGKTLAFV+PA+EMILRR+  LK+++VGAII++PTRELA QI  V + F        PLLLVGGT  V +    F + GA ILVGTPGR+ D+L  Y +    RELE L+LDEADTLL+MGF  TL +I   LPKQRRTGLFSATQTRE + LARAG+RNPATV+V V ++           ++ QATP +L NF+  C  PEEKL +L+ FL +R   +K +VF  TCA VD+F++ L+Q P+ + +                   G RV  LHG+MVQK+R         A  +G        VAARG+D+PDV WIVQ++PPQDPS+F+HRVGRTARAG+ GRSLT L  AE+ Y+ FL  + VPL  +E       +E      ++E VK +   DR+VLE+GT+AF +FVR YKEHQC FIFRF  LDL A+ARA+ LLRLPK+ ELS+  +A  F+ E   D  +I+Y DK RE AR+ +L     E ++ +      +  R         G+    G+E+  ++KRKG+HQQ++EEW++L  EERL+K+LR +K++REEY+ ELR+
Sbjct:    1 MPLFMCNKDVCVEAVTGSGKTLAFVVPAIEMILRREVDLKRNQVGAIILTPTRELANQIFGVVSKFSEALDEAKPLLLVGGTS-VEECLAAFRKGGASILVGTPGRVEDMLNNY-NVFDTRELEALVLDEADTLLDMGFAGTLNSIFSLLPKQRRTGLFSATQTRETKALARAGLRNPATVSVAVRSKSGGAGAGGVPGQKTQATPSSLENFYIVC-EPEEKLAQLVGFLKARPEGEKTIVFLSTCAGVDFFSKTLSQLPSVKAL-------------------GLRVESLHGRMVQKRR--------TAVKDG-------HVAARGIDIPDVAWIVQFDPPQDPSYFVHRVGRTARAGKKGRSLTLLCPAEDAYIPFLANRKVPLREMEAFTSVNASE------ILEEVKGMVKTDRDVLEKGTKAFISFVRGYKEHQCSFIFRFNDLDLAAVARAFCLLRLPKIAELSNPAVAESFEKEKTVDFTAIKYADKAREKARQKQLVR-QDEENKQRAIEEEEEARRAEKELAAGGGKNNASGKEEGGKRKRKGRHQQLLEEWDDLANEERLYKKLRNKKLTREEYDHELRK 546          
BLAST of EWM26360.1 vs. NCBI_GenBank
Match: gi|695376720|ref|XP_009515846.1| (hypothetical protein PHYSODRAFT_309392 [Phytophthora sojae] >gi|348688757|gb|EGZ28571.1| hypothetical protein PHYSODRAFT_309392 [Phytophthora sojae])

HSP 1 Score: 510.76 bits (1314), Expect = 1.512e-169
Identity = 298/625 (47.68%), Postives = 406/625 (64.96%), Query Frame = 0
Query:   15 LAFQAMIPSLHERTLAAVAALNFTQMTPVQASTIPLFLTNKDVCVEAVTGSGKTLAFVIPAVEMILRRKSPLKKHEVGA-----------IIISPTRELAKQILKVTTHFCSHTGLRPPLLL-VGGTDIVGD-NFKRFSQDGADILVGTPGRLHDVLER-YGHAIGVRELEVLILDEADTLLNMGFKATLTAILDHLPKQRRTGLFSATQTREVRQLARAGMRNPATVAVQVVNQQTREVQATPQTLLNFHWTCARPEEKLGRLLAFLSRHREKKVMVFFITCAAVDYFARILTQHPAFRRVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRLKGVPLAALEEDEVRLPNEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVDFQEWATDTRSIEYQDKKREAARKMRLAEAARER-DRVKEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKEL 624
            + F    P+L    LA   AL F  MTPVQA+T+PLFL+NKDVCV+A TGSGKTLAFV+P V+++   K+ L    + A           ++ISPTRELA+QI +    F +H      LLL VGGT +  D +  R +     +++GTPGR  D+L R  G ++  RE E+LILDEADTLL+MGF+ +L  IL+HLPKQRRTGLFSATQT+EV+ LARAG+RNPAT++VQV N      Q TP TL N++      +++L  L  F+   + +K++VFF TC +VD+FAR+L +   F+                  G +   V  LHGKM QKKR      F+   S   G+L+CTDV ARG+D+PDVDWIVQY+PPQDP+FF+HRVGRTARAGR G +L+FL   E+ YV FL+++ VP      +E+ LP +      V+  VK+  L DR++LE+GT+AF AFVR+YKEHQCQFIFRF +LDLGA+AR + LL+LPK+ EL +  + ++F++    T  I+++DK RE  R+ +LA  A+E  +R K+ A  R+  R R    EEE +     +  R+R+K+KG HQQIVEEW+EL  EE+L+K+L++ KI+ EEYE  L
Sbjct:    1 MRFHDFQPALCPEILAETDALGFEHMTPVQAATLPLFLSNKDVCVDACTGSGKTLAFVLPIVQLL---KTKLADGSITAPRHADVTKLVAMVISPTRELARQIFECAEKFVAHALPSVQLLLFVGGTSVDEDLSLIRGAVGKCSVVIGTPGRTEDLLNRCVGSSVETREFEMLILDEADTLLDMGFEVSLNKILEHLPKQRRTGLFSATQTQEVKALARAGLRNPATISVQVANN----TQVTPSTLQNYYCLVGH-DQRLSALHNFVHSKKGEKLIVFFSTCGSVDFFARVLEE--LFK------------------GTKDMPVVALHGKMPQKKRTTNYDLFSSLKS---GLLVCTDVVARGIDLPDVDWIVQYDPPQDPNFFVHRVGRTARAGRSGCALSFLSSNEDAYVNFLKIRKVPC-----EEMTLPLD--TMEDVLPKVKSFILEDRDLLEKGTKAFMAFVRSYKEHQCQFIFRFKELDLGAVARGFCLLQLPKINELRN--VRINFEKTDIKTTDIKFKDKAREKERQKKLAAIAKENEEREKKNAEMREKKRKRP--LEEENQ-----KHPRRREKKKGLHQQIVEEWDELAEEEQLYKKLKKGKITEEEYEMAL 578          
BLAST of EWM26360.1 vs. NCBI_GenBank
Match: gi|1072230833|gb|OEU15566.1| (P-loop containing nucleoside triphosphate hydrolase protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 508.449 bits (1308), Expect = 3.696e-168
Identity = 298/683 (43.63%), Postives = 423/683 (61.93%), Query Frame = 0
Query:   12 PHRLAFQAMIPSLHERTLAAVAALNFTQMTPVQASTIPLFLTNKDVCVEAVTGSGKTLAFVIPAVEMILRRKSPLKKHEVGAIIISPTRELAKQILKVTTHFCSHTGLRPPLLLVGGTDI----------VGDNFKRFSQDGADILVGTPGRLHDVLERYGHAIGVRELEVLILDEADTLL--NMGFKATLTAILDHLPKQRRTGLFSATQT----REVRQLA-RAGMRNPATVAVQV-VNQQTREVQA---TPQTLLNFHWTCARPEEKLGRLLAFLSRHREKKVMVFFITCAAVDYFARILTQHPAFRRVLGT-------DQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRLKGVPLAAL---EEDEVRLP-NEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVDFQEWA---TDTRSIEYQDKKREAARKMR----LAEAARERDRVK-EQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKELRRRGSDEEGEGEASNEDAAHVSAASGSDSD 654
            P + +F+ + P L +  L  + + NF  MTPVQ +TIPLFL NKDV V+AVTGSGKT+AF++P V+ I +R +PL KH++GA+I+SPTRELA Q   V +  C    + PPLLLVGG             V ++ K F ++  DI++GTPGR+ D+L RY + + V ELE+LILDEAD LL        T+ +IL+ LPK RRTG+FSAT T    + V+ L  RAGMRNP  + VQV  N+++R V +   TP +L N+ +   + EEK+ RL AFL  HR +K +VFF+TCA VD++        AF+ +L +       D+GE N  + +     G  + +LHGK++QKKR+  + RF +  S+ G VL  TDVAARGLDV D+DW+VQ + PQDPS F+HRVGR+ARAGR+G SL FL E EE YV+ L  + V +  L   E+D+   P N++      +  ++ + L+DR+ LE+GT+AFT+++RAYKEH C+FIFRFA LDLG LA ++ LLRLPKMPEL      + +   A    D   I + DK RE  R+ R    LA   +   ++K EQ    +V+R +    E     V+ G   R   K++G++ QIV+EWEEL +EERL+K+ R+ KI++E+YE+ +        G  + +++   +V+A   S SD
Sbjct:   30 PKKGSFRNIQPPLTQGILDFLDSKNFHTMTPVQEATIPLFLQNKDVAVQAVTGSGKTIAFLVPTVQRIRQRLTPLLKHQIGALILSPTRELALQTWTVCSELCEAVQMAPPLLLVGGGRSGKSGGLNHRPVTEDLKTFHRESNDIIIGTPGRMDDILTRY-NVLDVTELEILILDEADVLLFGRTVIDPTIASILNRLPKMRRTGIFSATTTFTSNKSVKPLLQRAGMRNPVLINVQVAANEKSRPVLSTTYTPTSLTNY-YLVTKLEEKICRLAAFLQSHRHEKTIVFFLTCACVDFYG------TAFQHLLDSTKSNKSNDKGEDNDAQDQ----DGLTIELLHGKLLQKKREKAMVRFRE--SKSGAVLFATDVAARGLDVTDIDWVVQVDAPQDPSQFVHRVGRSARAGRLGSSLLFLTEKEESYVDLLANRQVSMQELPEREKDDTMTPINDNGNIIPFLPKIRGIVLKDRDFLEKGTKAFTSYIRAYKEHVCRFIFRFASLDLGHLATSFCLLRLPKMPELREFNGKLKYFLSAGPEVDIYKIPFLDKARETTRQKRLAVELAAGGKNAKQIKAEQKKADQVMRSK----ERRKVAVDKG---RNPDKKRGRNAQIVDEWEELAKEERLYKKFRRGKITKEQYEELMF-------GSLKTNDDTPKNVAAEQESSSD 684          
BLAST of EWM26360.1 vs. NCBI_GenBank
Match: gi|156384956|ref|XP_001633398.1| (predicted protein [Nematostella vectensis] >gi|156220467|gb|EDO41335.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 502.671 bits (1293), Expect = 2.527e-167
Identity = 279/616 (45.29%), Postives = 381/616 (61.85%), Query Frame = 0
Query:   22 PSLHERTLAAVAALNFTQMTPVQASTIPLFLTNKDVCVEAVTGSGKTLAFVIPAVEMILRRKSPLKKHEVGAIIISPTRELAKQILKVTTHFCSHTGLRPPLLLVGGTDIVGDNFKRFSQDGADILVGTPGRLHDVLERYGHAIG----VRELEVLILDEADTLLNMGFKATLTAILDHLPKQRRTGLFSATQTREVRQLARAGMRNPATVAVQVVNQQTREVQATPQTLLNFHWTCARPEEKLGRLLAFLSRHREKKVMVFFITCAAVDYFARILTQHPAFRRVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRL-KGVPLAALEEDEVRLPNEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVD-FQEWATDTRSIEYQDKKREAARKMRL-------AEAARERDRVKEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKEL 624
            PSL + TL ++  +NF+ MTPVQA+ IPLF++NKDV VEAVTGSGKTLAFVIP +E+ILRR+  LKKHE+GA+II+PTRELA+QI +V +           LLL+GG D   D  K F  +GA+I++GTPGRL D L R    I     ++ LEVL+LDEAD LL+MGF+A++  IL +LPKQRRTGLFSATQT EV  L RAG+RNP  V V+    +T+ VQ TP TL NF+  C R  EK  +L+AFL   ++KK MVFF TCA V+YF++ LT+                        L    +  LHGKM +  R  +   F +  S   G+L+CTDV ARG+D+P+V+W++QY+PP   + F+HR GRTAR G  G ++ FLL  E+ YV+F+ + + VPL ALE      P++D     +   +K LA +DR++ E+GT+AF +FV+AYK+H+C  IFRF +LDLG LA  +GLLRLP MPEL    + +D F     D   I YQ+K RE  R+ R+        E   ++ R KE  A  +          +E ++    +  R+  +RK KH+    + +EL  E RL K+L+Q KIS E++ +E 
Sbjct:   10 PSLSQTTLNSMKKMNFSTMTPVQAAAIPLFMSNKDVAVEAVTGSGKTLAFVIPIIEIILRREDKLKKHEIGALIITPTRELAQQIDEVVSTLVEDIPNIRRLLLIGGADPNAD-LKAFKYEGANIIIGTPGRLEDFLARQQDGINLASHLKSLEVLVLDEADRLLDMGFEASINTILGYLPKQRRTGLFSATQTDEVEALVRAGLRNPVRVTVREKLTKTKNVQRTPSTLQNFYLIC-RSHEKFSQLVAFLKARKDKKNMVFFSTCACVNYFSKALTKF-----------------------LPNVHIMALHGKM-KSNRHKIFDSFRKLES---GILVCTDVMARGVDIPEVNWVIQYDPPSSANAFVHRCGRTARIGNEGNAVVFLLPTEDSYVDFISINQKVPLQALE------PDKD--APNITAKLKKLATKDRDLFEKGTKAFVSFVQAYKKHECSLIFRFKELDLGLLAEGFGLLRLPSMPEL--RGVTIDSFTPHDIDYDKIRYQEKAREKQRQKRIQALVESGGEGVAKKKRKKETVAWSR---------NKERQIKREKRRARREFQRKQKHKFDQNDLDELASEARLVKKLKQGKISSEQFNEEF 577          
BLAST of EWM26360.1 vs. NCBI_GenBank
Match: gi|1173934110|gb|OQR85585.1| (DEAD/DEAH box RNA helicase [Achlya hypogyna])

HSP 1 Score: 503.056 bits (1294), Expect = 1.615e-166
Identity = 293/628 (46.66%), Postives = 391/628 (62.26%), Query Frame = 0
Query:   15 LAFQAMIPSLHERTLAAVAALNFTQMTPVQASTIPLFLTNKDVCVEAVTGSGKTLAFVIPAVEMILRRKSPL----------KKH--EVGAIIISPTRELAKQILKVTTHFCSHTGLRPP---LLLVGGTDIVGDNFK-RFSQDGADILVGTPGRLHDVLERYGHA--IGVRELEVLILDEADTLLNMGFKATLTAILDHLPKQRRTGLFSATQTREVRQLARAGMRNPATVAVQVVNQQTREVQATPQTLLNFHWTCARPEEKLGRLLAFLSRHREKKVMVFFITCAAVDYFARILTQHPAFRRVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRLKGVPLAALEEDEVRLPNEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVDFQEWATDTRSIEYQDKKREAARKMRLAEAARERDRVKEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKEL 624
            + F    P L    LA VA   FT MTPVQA+TIPLFLTNKDV V+A TGSGKTL+FV+P VEM+ RR              KK   ++ A+++SPTRELA+QI +    F S     P    +L VGGT +  D    R ++    ++VGTPGR+ D+L R      +  +E E LILDEADTLL+MGF+ ++TAIL  LPKQRRTGLFSATQT+EV+ LARAG+RNPATV+VQ+   Q      TP TL N++      + KL  L+ F++    +K +VFF TCA+VD++ ++L        VL                L  + V  LHGKM  KKR      F    ++  G+L+CTDV ARG+D+PDVDWIVQ++PPQDPSFF+HRVGRTARAGR G +LTFL   E+ YV FLR++ VP+A ++E    L  +D   T V+  VKAL L DR+++E+GT+AF +F+R+YKEHQCQFIFRF  LDL  +A  + L +LPK+ EL     ++ F+        I Y+DK RE  R+ +LA  A +    K +   +K+      K E E +  E     R+R+K+KG+HQQIVEEW+EL REERL+K+ ++ KIS+ EYE+ L
Sbjct:    1 MKFAECTPPLCAEVLAGVAEKGFTDMTPVQAATIPLFLTNKDVAVDASTGSGKTLSFVLPIVEMLRRRAQATGNDDAANIATKKQVTQLMAMVLSPTRELARQIHECACFFFSRA--LPSVQVILFVGGTSVDEDMASIRAAKGRMSVIVGTPGRIDDILNRVAPMGILETKEFEALILDEADTLLDMGFEQSITAILGRLPKQRRTGLFSATQTQEVKALARAGLRNPATVSVQLAVDQK-----TPTTLTNWYAE-VEYDAKLAALVQFVAARPSEKCIVFFSTCASVDFYGKVL-------EVL----------------LPEAAVVSLHGKMAPKKRVLCYESFE---AQTAGLLVCTDVVARGIDLPDVDWIVQFDPPQDPSFFVHRVGRTARAGRTGSALTFLSANEDAYVNFLRIRKVPVAKMDE----LAVDDAFRTDVLARVKALQLTDRDIVEKGTKAFISFLRSYKEHQCQFIFRFRDLDLARVAVGFCLFQLPKINELRALE-SIAFEPAGVKVVDIPYKDKVREKQRQAKLAAIAAQHKAEKLENYEKKL-----AKKELEAKAKEAP---RRREKKKGQHQQIVEEWDELDREERLYKKFKRGKISKAEYEEAL 581          
BLAST of EWM26360.1 vs. NCBI_GenBank
Match: gi|1214713659|gb|OWZ24543.1| (DEAD/DEAH box RNA helicase [Phytophthora megakarya])

HSP 1 Score: 494.197 bits (1271), Expect = 4.364e-163
Identity = 295/624 (47.28%), Postives = 404/624 (64.74%), Query Frame = 0
Query:   15 LAFQAMIPSLHERTLAAVAALNFTQMTPVQASTIPLFLTNKDVCVEAVTGSGKTLAFVIPAVEMI----------LRRKSPLKKHEVGAIIISPTRELAKQILKVTTHFCSHTGLRPPLLL-VGGTDIVGD-NFKRFSQDGADILVGTPGRLHDVLER-YGHAIGVRELEVLILDEADTLLNMGFKATLTAILDHLPKQRRTGLFSATQTREVRQLARAGMRNPATVAVQVVNQQTREVQATPQTLLNFHWTCARPEEKLGRLLAFLSRHREKKVMVFFITCAAVDYFARILTQHPAFRRVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRLKGVPLAALEEDEVRLPNEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVDFQEWATDTRSIEYQDKKREAARKMRLAEAARERD-RVKEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKEL 624
            + F    P+L    LA   AL F  MTPVQA+T+PLFL+NKDVCV+A TGSGKTLAFV+P V+++            R S + K  + A++ISPTRELA+QI +    F +       LLL VGGT +  D    R +     +++GTPGR  D+L R  G ++  RE E+LILDEADTLL+MGF+ +L  IL+HLPKQRRTGLFSATQT+EV+ LARAG+RNPAT++VQV N      Q TP TL N++      +++L  L  F+   + +K++VFF TC +VD+F+R+L +   F+                  G +   V  LHGKM QKKR      F+   S   G+L+CTDV ARG+D+PDVDWIVQY+PPQDP+FF+HRVGRTARAGR G +L+FL   E+ YV FL+++ VP      +E+ LP +      V+  VK+  + DR++LE+GT+AF AFVR+YKEHQCQFIFRF +LDLGA+AR + LL+LPK+ EL +  + +DF++    T  I+++DK RE  R+ +L   A+E + R K+ A  R+  R R         + E  Q+ R+R+K+KG HQQIVEEW+EL  EE+L+K++++ KI+ EEYEK L
Sbjct:    1 MRFHDFQPALCPEILAETDALGFEHMTPVQAATLPLFLSNKDVCVDACTGSGKTLAFVLPIVQLLKAKLADGSITAPRHSNVTK--LAAMVISPTRELARQIFECAEKFFTRALPSVQLLLFVGGTSVDEDLALIRGAVGKCSVVIGTPGRTEDLLNRCVGSSVETREFEMLILDEADTLLDMGFEVSLNKILEHLPKQRRTGLFSATQTQEVKALARAGLRNPATISVQVANN----TQVTPATLENYYCLVGH-DQRLSALQHFVQSKKGEKLIVFFSTCGSVDFFSRVLEE--LFK------------------GNKDFPVVALHGKMPQKKRTTNYDHFSALKS---GLLVCTDVVARGIDLPDVDWIVQYDPPQDPNFFVHRVGRTARAGRSGCALSFLSSNEDAYVNFLKIRKVPC-----EEMTLPLD--TMEDVLPKVKSFIMEDRDLLEKGTKAFMAFVRSYKEHQCQFIFRFKELDLGAVARGFCLLQLPKINELRN--VRIDFEKTDIKTTDIKFKDKAREKERQKKLVAIAKENEARDKKNAEMREKKRKRP--------LEEDTQKPRRREKKKGIHQQIVEEWDELAEEEKLYKKMKKGKITEEEYEKAL 577          
BLAST of EWM26360.1 vs. NCBI_GenBank
Match: gi|570981115|gb|ETP41601.1| (hypothetical protein F442_11333, partial [Phytophthora parasitica P10297])

HSP 1 Score: 494.967 bits (1273), Expect = 4.391e-163
Identity = 296/624 (47.44%), Postives = 403/624 (64.58%), Query Frame = 0
Query:   15 LAFQAMIPSLHERTLAAVAALNFTQMTPVQASTIPLFLTNKDVCVEAVTGSGKTLAFVIPAVEMI----------LRRKSPLKKHEVGAIIISPTRELAKQILKVTTHFCSHTGLRPPLLL-VGGTDIVGD-NFKRFSQDGADILVGTPGRLHDVLER-YGHAIGVRELEVLILDEADTLLNMGFKATLTAILDHLPKQRRTGLFSATQTREVRQLARAGMRNPATVAVQVVNQQTREVQATPQTLLNFHWTCARPEEKLGRLLAFLSRHREKKVMVFFITCAAVDYFARILTQHPAFRRVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRLKGVPLAALEEDEVRLPNEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVDFQEWATDTRSIEYQDKKREAARKMRLAEAARERD-RVKEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKEL 624
            + F    P+L    LA   AL F  MTPVQA+T+PLFL+NKDVCV+A TGSGKTL+FV+P V+++            R + L K  + A+IISPTRELA+QI +    F +       LLL VGGT +  D +  R +     +++GTPGR  D+L R  G ++  RE E+LILDEADTLL+MGF+ +L  IL+HLPKQRRTGLFSATQT+EV+ LARAG+RNPAT++VQV N      Q TP TL N++      +++L  L  F+   + +K++VFF TC +VD+F+R+L +   F+                  G     V  LHGKM QKKR      F+   S   G+L+CTDV ARG+D+PDVDWIVQY+PPQDP+FF+HRVGRTARAGR G +L+FL   E+ YV FL+++ VP      +E+ LP +      V+  VK+  L DR++LE+GT+AF AFVR+YKEHQCQFIFRF +LDLGA AR + LL+LPK+ EL +  + ++F++    T  I+Y+DK RE  R+ +LA  A+E + R K+    R+  R R   GE +       +  R+R+K+KG HQQIVEEW+EL  EE+L+K++++ KI+ EEYEK L
Sbjct:   16 MRFHDFKPALCPEILAETDALGFEHMTPVQAATLPLFLSNKDVCVDACTGSGKTLSFVLPIVQLLKAKLADGSITAPRHADLTK--LVAMIISPTRELARQIFECAEKFFTRALPSVQLLLFVGGTSVDEDLSLIRGAVGKCSVVIGTPGRTEDLLNRCVGSSVETREFEMLILDEADTLLDMGFEVSLNKILEHLPKQRRTGLFSATQTQEVKALARAGLRNPATISVQVANN----TQVTPATLQNYYCLVGH-DQRLSALHHFVQSKKGEKLIVFFSTCGSVDFFSRVLEE--LFK------------------GKNDFPVVALHGKMPQKKRTTNYDHFSTLKS---GLLVCTDVVARGIDLPDVDWIVQYDPPQDPNFFVHRVGRTARAGRSGCALSFLSSNEDAYVNFLKIRKVPC-----EEMTLPLD--TMEDVLPKVKSFILEDRDLLEKGTKAFMAFVRSYKEHQCQFIFRFKELDLGAAARGFCLLQLPKINELRN--VRINFEKTDIKTTDIKYKDKAREKERQKKLAVIAKENEARDKKNVEMREKKRKRPLDGENQ-------KHPRRREKKKGLHQQIVEEWDELAEEEKLYKKMKKGKITEEEYEKAL 593          
BLAST of EWM26360.1 vs. NCBI_GenBank
Match: gi|325179717|emb|CCA14120.1| (DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14])

HSP 1 Score: 495.352 bits (1274), Expect = 5.050e-163
Identity = 291/670 (43.43%), Postives = 402/670 (60.00%), Query Frame = 0
Query:   15 LAFQAMIPSLHERTLAAVAALNFTQMTPVQASTIPLFLTNKDVCVEAVTGSGKTLAFVIPAVEM----ILRRKS---PLKKH----EVGAIIISPTRELAKQILKVTTHFCSHTGLRPPL---LLVGGTDIVGDNFKRFSQDG---ADILVGTPGRLHDVLERYGHA---IGVRELEVLILDEADTLLNMGFKATLTAILDHLPKQRRTGLFSATQTREVRQLARAGMRNPATVAVQVVNQQTREVQATPQTLLNFHWTCARPEEKLGRLLAFLSRH--------------REKKVMVFFITCAAVDYFARILTQHPAFRRVLGTDQGEGNGKKRKVGGLQGSRVAVLHGKMVQKKRDGMLARFTQAASEGGGVLLCTDVAARGLDVPDVDWIVQYEPPQDPSFFIHRVGRTARAGRVGRSLTFLLEAEEPYVEFLRLKGVPLAALEEDEVRLPNEDPAGTGVVEGVKALALRDREVLERGTRAFTAFVRAYKEHQCQFIFRFAQLDLGALARAYGLLRLPKMPELSHHPIAVDFQEWATDTRSIEYQDKKREAARKMRLAEAARERDRVKEQAAGRKVVRGRTGKGEEEGRVVEPGQEKRQRKKRKGKHQQIVEEWEELGREERLFKRLRQRKISREEYEKELR-RRGSDEEGEGEASNEDAAHVSAAS 649
            + F+ + P L +  L  V AL FT  TPVQ+STIP FLT KDVCV A TGSGKTLAF++P  +     I+  KS   P K      +V A+I+SPTRELAKQI  +   F   T + P +   L VGG     D  +R   +      ++VGTPGR+ D+  R+      + V + E+LILDEADTLL++GFK  +  IL ++PKQRRTGLFSATQT+EVR LARAG+RNP  ++VQV   ++   Q  P TL N+ +     +++L  L+ FLS                 E K +VF  TCAAVD+F  IL   P F  VL    G+               + +LHGKMVQKKR     RF +  S   GVL+CTDV ARG+D+PDVDWI+QY+PPQDP+FF+HR+GRTARAGR G +L+F+ + E+ Y+ +LR++ VP   L E       E  A   ++  +K L ++DR+ LE+GTRAF AFVR+YKEHQCQFIFRF  LDLG +AR + LL+LPK+ E   + I+++  +   D   I+++DK RE  R+ +L E A  R       + RK         +E+G+   P +  R+R+K+KG HQQIV+EW+EL  EERL+K+ ++ KI+  +YE+ L  ++ + +E + ++  E    VS  S
Sbjct:    1 MEFRQLQPPLCKAILDVVEALEFTHTTPVQSSTIPHFLTGKDVCVNACTGSGKTLAFLLPLAQTLYSKIINYKSIHIPTKNCNTNPKVVAMILSPTRELAKQIHSLCEQF--FTRVLPQVFTGLFVGGNATEMD-LQRIIDETMGKCLVMVGTPGRILDIWTRFAKKNTPLNVEDFEMLILDEADTLLDLGFKQEIDQILQYVPKQRRTGLFSATQTQEVRDLARAGLRNPIVISVQV---ESGSQQVIPTTLNNY-YVVVEHDQRLSVLVKFLSDAFGIGNPVKDEGMAVSEFKCIVFISTCAAVDFFGTILKHLPNFCHVLNGTTGD---------------IVLLHGKMVQKKRVSNYKRFQEIKS---GVLICTDVVARGIDLPDVDWILQYDPPQDPNFFVHRIGRTARAGRTGNALSFISQKEDVYINYLRIRKVPCEELPESYGLRSLE--AVEDILPAIKNLIIQDRDFLEKGTRAFIAFVRSYKEHQCQFIFRFQDLDLGRVARGFALLQLPKIKEFRKYKISLEPTK-GIDISQIKFKDKAREKERQKKLVEYAELR-------SERKPYETLPVFQKEKGK---PTKNPRRREKKKGLHQQIVDEWDELAEEERLYKKFKRGKITENDYEQVLLCKKTTKDEDDKQSDTETTEGVSLES 632          
The following BLAST results are available for this feature:
BLAST of EWM26360.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108370|gb|EWM26360.1|0.000e+0100.00atp-dependent rna helicase ddx55 [Nannochloropsis ... [more]
gi|224001628|ref|XP_002290486.1|0.000e+047.41predicted protein, partial [Thalassiosira pseudona... [more]
gi|298714126|emb|CBJ27307.1|7.649e-17849.66DEAD box helicase [Ectocarpus siliculosus][more]
gi|695376720|ref|XP_009515846.1|1.512e-16947.68hypothetical protein PHYSODRAFT_309392 [Phytophtho... [more]
gi|1072230833|gb|OEU15566.1|3.696e-16843.63P-loop containing nucleoside triphosphate hydrolas... [more]
gi|156384956|ref|XP_001633398.1|2.527e-16745.29predicted protein [Nematostella vectensis] >gi|156... [more]
gi|1173934110|gb|OQR85585.1|1.615e-16646.66DEAD/DEAH box RNA helicase [Achlya hypogyna][more]
gi|1214713659|gb|OWZ24543.1|4.364e-16347.28DEAD/DEAH box RNA helicase [Phytophthora megakarya... [more]
gi|570981115|gb|ETP41601.1|4.391e-16347.44hypothetical protein F442_11333, partial [Phytopht... [more]
gi|325179717|emb|CCA14120.1|5.050e-16343.43DEAD/DEAH box RNA helicase putative [Albugo laibac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4306rna4306Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications