|
|
Properties
| Property Name | Value |
|---|
| Product | sentrin-specific protease 1 |
| Orig transcript id | gnl|cribi|Naga_100031g30.2252.mrna |
| Orig protein id | gnl|cribi|Naga_100031g30.2252 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:242549..244583 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4305 ID=rna4305|Name=rna4305|organism=Nannochloropsis gaditana|type=mRNA|length=5107bp
GATGCCTACACAATTGACCGTGCACCACACATCCCATCCAGCCGCCACAC
GAACCACAGCGTCGCATACGGGTACAAAGAGGTCGGCGTGCTGAAAGGGA
GGAAGGAGCAGGGAAGTGGGACTGGCAGCAATGGAATTTCTGAGGAGCTT
GATGCGAAGTGGCAATGGGGAAGGCCGGAGCACGGGGGGGGGCGATGAAA
GCGTCACATCGGGCGTGGCTTCGATAACACCCTCATCTTCCGGGTATAAG
TTGGACAGGGAGGCATCAAGGCATGCCTACAGTCGAGCAAATACCCTGCC
AATCTATCGAGTTGGAATGGGCGAGGGTCCCAGCTCCGCATTTGGTCCGC
AAGACGAAGGAGGCGGTGGACCTGATGCACAGGCCTTCCACATGACCCAT
TCACGTACCGTTTCTCCAACCCGCTTCTCCTGGCGGGCGCCATTGCGCGT
TCTTTCCTCCTTCCTTCCTGTGGGGCCCTCGGCGGCCGCGGAAGCTGCAT
ATGCGGAGCAACTGGTAGAGGAAGCACAACACCGGGAAGCAATCTTGCAT
CAATTGATCCATGCACTACAAACACTGATCAAAGAAGAGGTGGACCTCTC
ACGTGGGCAATCCCTACCGGTCGAAATAGTGACGCTCCGAGGGGACCTTC
CCGGGGTCCAGGAGCTTTGTCTGACAGTGGAGCAAGCCTGCTTCCACGGC
ATCAAGACCGAGTCCTTCCACGGGCAACTGCCCTTTTGGGATTTGATCGA
AGCCTTGGAAGGTTGGACCCGGAAGGAAAGTGCTGAGCACGAAGCAGCGG
GTGGTACCCGTATGCTGCGGGAGCCGTTCGGTGCCGGGGAGGATCCTGCT
CTGGAAGGGGGAGAGGAGCCGGAGGATGAATGTGGAGGACAGATCATACG
GTACCTTGTCCATCGTGTCAACCGTGTAACTGCCATCCGGACATCGGTCG
GGAAGGCGCGCTCTTTCCTCCGGCACGCTCTCCACGACGGGAATCTGGAC
CAAGTCATGGCCCGAGTCATGGCCCAGGCGCCCGCCCAGCTCGGTTTGTT
CTACGACGCAGACGCGATTGTCTTGCACCAGGACGACAGGACCTTACTCT
TGGAAGTGCTTCGCTCCATATCCGATCATTTTCGCCTGGATCTGTCGGGG
GACATGGAGGCACCGGGGTTGGACCGAGAGCCCGACTGGCCCATGCTCCA
TTTGGCGACCGAAGCGGCCCGGCGGCGGCGGGAGCGGGAGGAAGGGAAGG
ATCGTGGGATCCTGGCAGCCGCTTTGCTCGACGACCTGACGCACTGGCAG
TTGGAGGAGAGAGGGGAGGCGAAGGCCCTGGAGACTTTCCAGCGTTCCGA
TGCCTTCAACAGCAGCGCTAAGCGGACGGGCCACCGGGACCGGGTGGTCG
ACGCGCTCTTGGAGACGTCGGGAGTGGCCTTGCGGCACGTGGGGGGGAAG
GGCCCGGGGGAAGGAGGGGAGGAAGGGGGAAAAGGAGAGGAGGAAGCCGA
GGTGGTGGAACTGGTGGAGGTGGGGGGGGGCGCAAGCAGGCCCTATCACC
GGCTTCTCCACGAGCAACAACGGCGTTTGGCGCTTCAAAGCGCGCGGAGG
ACCGACGTGGGGAGTAGAGAAGGAGACATGTCCTCGGCCGGGTCAGAGAC
ACCTTCCAGCCTCACCACACCCCCCCGACGACGGCCAAAGGGAGGGGAGC
TGTACATATCCACTTCCTTACCCTCCACCCCTGCCTACAAGGGGGCTCGC
GGCCACGCCTCCCCCCGGCGGGCGGTGACCCCCACCACGACCGTCACCCG
CTTGGCCCACCCTAACCGCTACACCCCCATCCAATTTTCGTCTCCGCGTC
ATTTGTCTGGCCTTGCCGACGAAGCTTTCCCCCAGAGTCCTCCCTCGGGG
GAGGTGCTGGATCTCTTTCGCCCTGCTTCTCCGCCGCATTCTCCTGTTCC
CATCTCTCTGCGCCCTGCCCCTGCGTCTTTTGACCACGAATCCCACCATG
GTCCAATCATCCTTCCTTCGAAAGAATTCCTCTCCCACTCGCCTGCCTCT
CGCCTCCGTCGTCCTTCGCCCCAAACCCGCAAAGTATTCGGCGTTCCCCT
CGCCCATCTCGTCCGTGACGTGGAGACGTGCCGCTTCGCCTTTTTGGAGC
CTTCTCTGGGCGTTCCTTATGTATTTGAAACCATGATTGGCTATTTGGAG
GCCTATTTGGAAGGTTCACCGGACTTGTTTGAGTCGAGAGTGAGCGGATG
GCGGGTCTCCAACCTCTCCAAGGTCCTGGACGAGAGTCAGGAAATTCCCC
CCGGGACTGATCCCTCCATCGTCGCCGCCACCCTGAACCTAGCCCTGCGT
ATGCTCCCAGAACCTCTCCTTACGTATGAATCCTACCATGCCTTCCTCAG
CGCGGCCCGTGTGTCGGATTTGGCCTTGAGGCGGGCGTCAATCAGCCAAC
TATTGCACGGCCTCCCTTGGGAACACAAGCCGACGTTGCGGAAGCTTATG
CACCTATTGTGGAAGGCCTGTCAAGCAGCAGAGCATGCAGGAGATGGTGC
CGATGAGCGGGTAGGGTGGGATGGGGCCTCAAGCCGGCAACCTCAGCAGT
ACGGCTTGTCCAGCCGCAAGCTCGCCCCCATTTTCGCCCGCTCCGTGCTC
CGGAGCTACTTGCCCCAATTTTCGAGAGCAGAGCAAGAGCACATCCGACA
AATTCAGTCCGGTGACCAGCTAGTCCAGCCTGGAGCAAACCTTGCACTGC
CTTTCTCCCTCTCTCACCCTCCTGAGGCGGTGGCTTTAACGCAGGAACTC
ATCGAGCACTACACTTACTATTTCCACCGGGCCCGGGAGGAGGAAGAGGC
CAAGACCAGGGCTCTTCAGGCAAAGGTAGAGCGCTTGGCAGCGATGGTGG
AAACAAGCAAACAGCCGGCGGATGCTGAGAGGGACTCAGAATGCCTATCC
CTGTTCCGGACTCTGTTTGTATTTCTGGGAAGGGTGGAGGAAAGGATTCA
CCTGGCTTCCACGGTATCACCTGCTCCAGTTTCCACACGGCATCGGCATT
CCATGAGCGACGCCTTTCGACACCGTGCCGGTGGGTCTCCTCCACCTGCA
AGCAGGAAAGAGCTCGATGCGCAGGTGAGACGGGTGCGATCCCAGTCAAT
GCCCGACGTATTTGATCCCACGTCCAGCCTGCACGGGGAGGACGAAGAAG
GTGCAGATATGACGGCGATCCAGGAAGCTGCTCGGAAAGCAGAGATGTTA
GGGTTAAAGGCAGGGGTGGCTGGGACGTCGATGTCAATTTTGCCGGAGAA
CGAGGGGGAGGAAGGCGGCTCGGAGGAAGAGCAGGAGGCTGCCGGGGAGG
ACGTGCCTTTTTCCTTTGATCACCCACGCTGGGAAACGTGCGGATTCGTG
CGCGGAGATCCCGGCTGTGAGTTAGTCTTAAGTGGAAGACTCACGCTTCA
ATGTATCGTTCGATTTGTCCGCCGCTTCCCATGCATCGCCGCGGAGATGA
TATTTCAATATTCGCACCATGGACGCCGGGGCATCACCATTAGCTTTCCT
GCTTTATGCGTGCAAGTGACGAGACTCGTCTTGGAGCTTCTGCAACTGCT
TCCAAAAACCGAAGGCGGGCCTTTATCCATCACCACCTTTGCCCAAGCTC
CGTACTGGCGCCTCTTGGATAGCCCTCGGGCCGTGGAAGAAGTATTTTGC
TTCGCCTTGACCCTGGTGGATTTTTTGCATTTTCACGAAGCTTTGCGGAT
GGATGCGGTCAAGCCACACATTTTGGAAGCGAAACGACAAGTCTCTTGGG
CCTTGGCGCAGGGTCCAGCGTCAGTACACTCGTTGTGGGAGCTTTGGCTG
GCTTTGAGAGCAGAACTTAGAAGGCAATATCGCGATGCCCATCGAAAGGA
AGAGGAGGAAGAAAAGAGACGGGGAAGAGAAGAATCGCGAAGCCGTATGG
AAAGGAAGGCCGATGAGGAGGTACAGCTGGCGGATGACCAGGCTTGTTTC
CTCCAAGCTGATCCGACCAATGATCAAATCATCTACAAAGTCAGTAGGGG
GATCAGAAGTCGCATGTGGGGAAAGTCAGCTATTCTGGCGCCATGGCAGG
TGATAACGCTTGAAAGATCCCTGCCTGAACACCACCGAGATAGGGATTGG
TTCCTTCTCTATTCGCTTAAAAAGCACGGGACGGCAATGCACACCATTTT
TGAGCGGTGCAAGGATCATCCATACTCATTGCTGTGCGTCGTGGATAATG
ACGGGGTTGTATTCGGGGGTATGGCTACAGAGGAGTGGAGAGATCAGAAA
GATAGATACTTTGGATCCGGTGAAAGCTTTCTTTTCTCTTTTAAGAGCAA
TAAATTTGCCAAATACACATGGACGAGGAATAACACCTACTTTATGTTGG
CATCGCAGAGAATTGGAATGGCGATGGGGGGCGGAGGACACTTCGGCTTA
TATTTGAACTCCGATCTGACGAGAGGGTCGAGCGATAAGTGCGATACTTT
TGGTTCTGTCACACTATCAGGCGAGAAAAATTTCGAGGTTGTGAATATCG
AAGTATGGGGGTTTGCAGATCCGACGGGATTGCTGGATACTGACGCTGCG
GCAGACTGGGATAGCGAAGGAGAGGAATGGACGCGAGCAAGGGTAGGATC
TAGCAAACAGGGAGTAAAAGGGCGGAAATGCAAAGAGCTGAGGGATAGGC
GACCTAAAGGGCTGGCGGAAAGTTTGTCCGAGCAGCGACAGTATCAGAAT
GACAATATGTAAAACAAAGAATGGTAATAAGGAAAGTTGAAATGTATGTT
TGATTGGGCATCACCAATGCATTATTCTTCCGTGGCTCTGAGTACAACAT
CGTACATTAGAGTGAACGAAGACCAGCGTGTGGAAATTTGCGGCCACACA
ATAATGTACCCAATGTGTTTATAAAATAATGAAATCTTTTCTAAGAGTGT
TCAGTGGAGCAGCACACATCATATCTTGTCCAGATCATGTTACGCCGATA
TACTTTAAAAGAAAAATTGGTACAATACAAATGTATTATATCCTTTACGA
ATATACGCTCTTTTTCTAATATTGTGTAACTCCTCCTCCAAGATCTTTAC
ATTCGAA back to topprotein sequence of rna4305 >rna4305-protein ID=rna4305-protein|Name=rna4305|organism=Nannochloropsis gaditana|type=polypeptide|length=629bp
MSHSTSFFTRPRFMLRRKWGHHDEREARYGTKPSAESNSSETPNSFFRGS
WRTSTSWAPFSQVYNGASTSSMVPGNEACQYDQQDTGHFPSSDPSIPEAT
TPHWPPSHPHQRQTACSPIDSNFWHFVDRVIFTREEVRGRAPLIKLVDGI
RSERYLINCYGQTQIDKLLAPIDTKADYIHLPRGLSGRPLVKWVSMSEFR
GMCASLTPIPSPSAVSMGFRKGVLAESSSPVAGYAFSPKRHRGEGYSHDQ
SAAPRALVEGGDPSTCFRESHSTPLPPPSIAAGINMDKQKLLEHLQQISD
EYLADDGATTAALEAEARVEGVLGGFGGARDPLRHALAAVEETLRKHSAA
RREAGGKDWRDRAAEIEARMVKDVKEEMVRARMSSLAPAEVKEVHHVLRQ
GKATDVVARGFNVDMRRQDLQTCNPGTWLNDEVINFFMSLLKERDDSFCA
AAAARGVERRKNWFFNSFFMSKLLDDNNGYKYANVRRWSRKAGDLFSYDK
VFFPVNIRNTHWCLAVIYMQEKKIQYFDSLVGTGREYLVALRQYIADEHQ
DKKKSALDISDWELVSSDRQVVPQQGNGADCGCFASAFAYLLSEDLPINY
ISQADMPAFRQRLVYSIVKKALTWNGEDA back to topmRNA from alignment at CM002463.1:242549..244583- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna4305 ID=rna4305|Name=rna4305|organism=Nannochloropsis gaditana|type=mRNA|length=2035bp|location=Sequence derived from alignment at CM002463.1:242549..244583- (Nannochloropsis gaditana)
CCGCCATTGACAAAGAAGTAAAGAAAAAAATATTGCGACCAACCCGTCAC
GAACTTCAAAGTCATACAGGTGGTCAGAATGAGCCATTCAACCAGCTTTT
TCACGCGGCCACGCTTTATGCTGCGGCGAAAATGGGGCCATCACGATGAA
AGGGAAGCTCGATATGGAACTAAACCAAGCGCGGAAAGCAATAGCAGCGA
AACACCAAACTCCTTTTTCAGGGGTTCATGGCGAACCAGCACGAGCTGGG
CTCCATTTTCTCAAGTGTATAATGGGGCCAGCACCTCATCGATGGTCCCT
GGTAACGAAGCCTGCCAATATGATCAACAAGACACAGGACACTTCCCTTC
CTCGGACCCCAGCATCCCGGAGGCAACCACTCCGCATTGGCCTCCCTCGC
ATCCTCACCAGCGCCAAACTGCATGCTCACCTATTGATAGCAACTTCTGG
CATTTCGTGGATCGTGTCATCTTCACACGAGAGGAAGTGCGAGGACGAGC
CCCTCTAATTAAGCTCGTCGACGGCATCCGCTCTGAACGCTACTTGATAA
ACTGCTACGGCCAGACGCAGATCGATAAATTGCTGGCTCCCATCGACACA
AAAGCAGACTATATCCATCTACCACGTGGGCTGAGTGGAAGACCGCTTGT
AAAATGGGTTTCCATGTCAGAGTTTCGAGGCATGTGCGCATCGTTAACTC
CCATCCCATCCCCATCGGCTGTGTCAATGGGGTTCAGGAAAGGAGTCTTG
GCAGAAAGCTCTTCGCCTGTGGCGGGCTACGCATTTTCACCCAAACGCCA
TCGCGGTGAAGGATATAGCCATGATCAAAGTGCCGCACCCCGTGCGCTTG
TCGAGGGAGGCGACCCTTCCACCTGTTTCCGCGAAAGTCACTCGACGCCG
TTGCCCCCACCGTCCATCGCAGCGGGCATAAACATGGACAAGCAGAAACT
CTTAGAACACCTGCAACAGATATCAGACGAATACTTGGCGGACGATGGAG
CCACGACGGCGGCGTTGGAAGCGGAGGCGCGCGTGGAGGGAGTGTTGGGT
GGTTTTGGTGGGGCGAGAGATCCGCTCCGGCATGCTCTGGCCGCCGTGGA
GGAGACCTTACGGAAGCACTCCGCAGCCCGGAGAGAGGCTGGAGGGAAAG
ATTGGAGGGATCGAGCGGCGGAGATTGAGGCACGCATGGTCAAGGACGTG
AAGGAGGAGATGGTTCGCGCTCGAATGTCGTCCTTGGCGCCCGCCGAGGT
AAAAGAGGTGCACCACGTGCTTCGGCAAGGAAAAGCGACCGACGTGGTCG
CACGTGGCTTCAATGTCGACATGCGCAGACAAGATTTACAGACTTGCAAC
CCTGGAACGTGGCTGAATGACGAGGTGATCAATTTCTTTATGAGCCTGCT
GAAGGAGCGGGATGATAGCTTCTGCGCGGCCGCAGCCGCACGCGGGGTAG
AGCGCCGGAAAAATTGGTTTTTCAACTCCTTTTTCATGTCAAAACTGCTG
GATGACAACAACGGGTATAAATATGCAAATGTTCGACGATGGTCTCGCAA
GGCTGGGGATCTCTTCAGCTACGATAAAGTCTTCTTCCCGGTGAACATTC
GGAATACCCATTGGTGCCTGGCCGTCATATATATGCAGGAGAAGAAAATA
CAGTACTTTGACAGTTTGGTTGGGACAGGTCGGGAGTACCTTGTGGCACT
CCGCCAATATATAGCGGATGAGCATCAGGATAAGAAAAAAAGCGCTTTGG
ATATCAGTGACTGGGAGCTCGTTTCATCAGATCGGCAGGTGGTACCTCAG
CAAGGGAACGGTGCAGACTGTGGATGCTTTGCCTCGGCGTTCGCATATCT
TTTGAGCGAAGACCTACCTATCAATTATATCTCTCAAGCAGATATGCCCG
CCTTTCGGCAGCGTCTCGTCTACAGTATCGTAAAAAAGGCGCTAACCTGG
AACGGTGAGGACGCATGACGAGGGTGGGAGGTTGTTGGTTTTGGTGCAAG
CAATCACAAAGTAAAAAAAACTTCCTGACACTGTC back to topCoding sequence (CDS) from alignment at CM002463.1:242549..244583- >rna4305 ID=rna4305|Name=rna4305|organism=Nannochloropsis gaditana|type=CDS|length=1890bp|location=Sequence derived from alignment at CM002463.1:242549..244583- (Nannochloropsis gaditana)
ATGAGCCATTCAACCAGCTTTTTCACGCGGCCACGCTTTATGCTGCGGCG
AAAATGGGGCCATCACGATGAAAGGGAAGCTCGATATGGAACTAAACCAA
GCGCGGAAAGCAATAGCAGCGAAACACCAAACTCCTTTTTCAGGGGTTCA
TGGCGAACCAGCACGAGCTGGGCTCCATTTTCTCAAGTGTATAATGGGGC
CAGCACCTCATCGATGGTCCCTGGTAACGAAGCCTGCCAATATGATCAAC
AAGACACAGGACACTTCCCTTCCTCGGACCCCAGCATCCCGGAGGCAACC
ACTCCGCATTGGCCTCCCTCGCATCCTCACCAGCGCCAAACTGCATGCTC
ACCTATTGATAGCAACTTCTGGCATTTCGTGGATCGTGTCATCTTCACAC
GAGAGGAAGTGCGAGGACGAGCCCCTCTAATTAAGCTCGTCGACGGCATC
CGCTCTGAACGCTACTTGATAAACTGCTACGGCCAGACGCAGATCGATAA
ATTGCTGGCTCCCATCGACACAAAAGCAGACTATATCCATCTACCACGTG
GGCTGAGTGGAAGACCGCTTGTAAAATGGGTTTCCATGTCAGAGTTTCGA
GGCATGTGCGCATCGTTAACTCCCATCCCATCCCCATCGGCTGTGTCAAT
GGGGTTCAGGAAAGGAGTCTTGGCAGAAAGCTCTTCGCCTGTGGCGGGCT
ACGCATTTTCACCCAAACGCCATCGCGGTGAAGGATATAGCCATGATCAA
AGTGCCGCACCCCGTGCGCTTGTCGAGGGAGGCGACCCTTCCACCTGTTT
CCGCGAAAGTCACTCGACGCCGTTGCCCCCACCGTCCATCGCAGCGGGCA
TAAACATGGACAAGCAGAAACTCTTAGAACACCTGCAACAGATATCAGAC
GAATACTTGGCGGACGATGGAGCCACGACGGCGGCGTTGGAAGCGGAGGC
GCGCGTGGAGGGAGTGTTGGGTGGTTTTGGTGGGGCGAGAGATCCGCTCC
GGCATGCTCTGGCCGCCGTGGAGGAGACCTTACGGAAGCACTCCGCAGCC
CGGAGAGAGGCTGGAGGGAAAGATTGGAGGGATCGAGCGGCGGAGATTGA
GGCACGCATGGTCAAGGACGTGAAGGAGGAGATGGTTCGCGCTCGAATGT
CGTCCTTGGCGCCCGCCGAGGTAAAAGAGGTGCACCACGTGCTTCGGCAA
GGAAAAGCGACCGACGTGGTCGCACGTGGCTTCAATGTCGACATGCGCAG
ACAAGATTTACAGACTTGCAACCCTGGAACGTGGCTGAATGACGAGGTGA
TCAATTTCTTTATGAGCCTGCTGAAGGAGCGGGATGATAGCTTCTGCGCG
GCCGCAGCCGCACGCGGGGTAGAGCGCCGGAAAAATTGGTTTTTCAACTC
CTTTTTCATGTCAAAACTGCTGGATGACAACAACGGGTATAAATATGCAA
ATGTTCGACGATGGTCTCGCAAGGCTGGGGATCTCTTCAGCTACGATAAA
GTCTTCTTCCCGGTGAACATTCGGAATACCCATTGGTGCCTGGCCGTCAT
ATATATGCAGGAGAAGAAAATACAGTACTTTGACAGTTTGGTTGGGACAG
GTCGGGAGTACCTTGTGGCACTCCGCCAATATATAGCGGATGAGCATCAG
GATAAGAAAAAAAGCGCTTTGGATATCAGTGACTGGGAGCTCGTTTCATC
AGATCGGCAGGTGGTACCTCAGCAAGGGAACGGTGCAGACTGTGGATGCT
TTGCCTCGGCGTTCGCATATCTTTTGAGCGAAGACCTACCTATCAATTAT
ATCTCTCAAGCAGATATGCCCGCCTTTCGGCAGCGTCTCGTCTACAGTAT
CGTAAAAAAGGCGCTAACCTGGAACGGTGAGGACGCATGA back to top
|