rna4301, rna4301 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4301
Unique Name	rna4301
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1291
Alignment location	CM002463.1:217913..220109 +

Link to JBrowse

Properties


Property Name	Value
Product	succinate-semialdehyde dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100031g34.2242.mrna
Orig protein id	gnl\|cribi\|Naga_100031g34.2242
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:217913..220109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100031g34	gene4145	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4301	rna4301-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26359.1	cds4291	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:217913..220109+
coding sequence from alignment at CM002463.1:217913..220109+

mRNA sequence

>rna4301 ID=rna4301|Name=rna4301|organism=Nannochloropsis gaditana|type=mRNA|length=1291bp
TTCGCTGTTGAACTTTCTTGCTGACGCAACATAGGAAAATAAAATACCTT
CTCTTCCTTGTCCACCACCACCTGTCTCCCTTCGCTTACCACTCACAGCA
GCTTTCATTGAAGGCGGATGCGACAGCTGCCAAGGCACGTCTAGAGTCAT
TTTATATTCGACATGCTCGGGGCAACAGCTGTGGCAGCAGACGGCTGAGA
GGGGGATGACTGGGAGATACTAGCTTCTCGCAGGGCCCTTTCACAAGTAT
GCTCTCCGGCAAACGTTGTCTTGTCGTTGGTCTCGCCAATCATCGTTCCT
TGGCGTGGGCTTGCGCACAGGCATGGCGTGCAGCGGGGGCTGAGGTCATG
GTCAGCTCCCTTCCTCGATTTGAGTCCTCCGTTCAGAAGCTTCTTGCATC
ATCGTGGCCAGAAGCAGGAGGTCAGGAAAGTGAAAAATATAGCGTGACAT
GCGACATCATGGACCAGGAAAGCCTGAAAACGATGATGGCCAAAGTTTCC
GAGCGCTTTGGAGGCAAACTTGATGTTGTGCTCCATGCTGTAGCTCAAGC
GTCTCCACCAGCCATGCAAAATGCTTTCACAGAGACGACGGCCGAGGCCT
TCGCGCAAGCACACCTTGTCAGCGCTCACTCTTTGGTGACACTTGCTCGG
GAAGCTCTCCCGCTCCTTGCTCATCGGCACAGCCACACTGCAGGCACGCA
GGGTGCGTCTACGAGAGGAACAAGGAACAGCAGCATCCTCACCCTTTCCT
ATCTAGGGGCACAACGTGCCATACCCCCCTACAAGGTGATGGGCCCCGCC
AAAGCCTCTCTGGAAGCTTCGGTGCGTCTCTTGGCGGCTGAATTAGGTCC
TCCTCCCCACCAGATTCGTGTGAACGCTTTGAGTGTGGGTCCTGTGGCCA
CCCTCTCCGCCCGGGGCATTCCAGGTTTCAACGACATGTGCAGAGCTGCA
GCAGCCAGTGCACCTTTGAGACGAAATGCGGACTTGGAAGATGTGGGAGG
GGCGGCGGTTTTCCTCGCGAGCGATGCCGCCAAGAGTGTCACGGGGCAAG
TCATATTTGTGGATGGCGGGTTGAGCATCATGGCACCATGACGATCGCGA
GAAAAAGAGGGTGCTGTTTGACAACGATGTGGGGAGATAGTCCTGCTATA
CTGACCGTGGTTTGTCAGTAATTAGTGCTTGTGATCTTTTTTTCTCAAGA
GAGGCGTGTATTTTCTAAATGTATACGAAAAAAAGGGTGGCATCACCCCG
TTGAAAGTATCAAAGCTTCAGTGCGCAAGCACAATATCATT

protein sequence of rna4301

>rna4301-protein ID=rna4301-protein|Name=rna4301|organism=Nannochloropsis gaditana|type=polypeptide|length=570bp
MLRHLVRRTSSIRAAFPPDSWQAFTACLPRTSRFMVGQLDAVAASAALHP
IHPPNHSRGLTTGTTLTGNAASNIHAASAESASEFLDDPGLLRDEAYVNG
KWVKAKGGKTYEVTDPATHVVIARVPSMGAADTRGAIEAAAAAWEGWKQK
TPKQRGDVLRRWYDLIQHHTMDLAKILTLENGKPLAESRGEVGYGASFVE
FYAEEAKRTYGEVIPSPTPGRRLVTIKQPVGVAALITPWNFPIAMITRKA
APALAAGCPVVIKPAEDTPLSALALAELAERAGVPPGILNVLTCPREHAA
EVGLELSTSLNVRKLSFTGSTKVGKILMRDSASTVKKLSLELGGNAPLIV
FDDADIENAINGVLAAKFRNAGQTCVSPNRLLVQSRIYDEFVSTLAEKVA
NLQVGHGLQPGVQIGPLINPGGLEKVQRHVHDAVKKGAQVVTGGDLHALG
GTFFEPTVLGDCRPDMLVFTEETFGPVCSVFKFQAEAEAIEMANATPFGL
AAYVFAGDVGKGWRVAEAIEAGMVGVNEGMISTAVAPFGGVKESGVGREG
AKVGIDEYLETKYLCLGSFR

mRNA from alignment at CM002463.1:217913..220109+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4301 ID=rna4301|Name=rna4301|organism=Nannochloropsis gaditana|type=mRNA|length=2197bp|location=Sequence derived from alignment at CM002463.1:217913..220109+ (Nannochloropsis gaditana)
CAAAAACACTCAACCCGGACAGCTCACATCACACGCAATGCTCTTTGACA
GCGTTATATGCTCCGTCACCTCGTCCGACGTACGTCTTCTATCCGGGCGG
CATTTCCTCCTGATTCCTGGCAAGCGTTCAccgcttgcctccctcgcacc
TCGAGGTTCATGGTTGGTCAACTTGACGCAGTTGCCGCTTCTGCGGCCCT
GCATCCCATTCATCCTCCCAACCATTCCCGAGGACTTACAACGGGAACAA
CACTTACGGGAAATGCGGCTTCAAACATCCACGCGGCTTCAGCGGAAAGT
GCCAGTGAATTTCTTGACGATCCTGGCTTGCTCAGGGACGAGGCGTACGT
GAATGGGAAGTGGGTGAAagccaagggaggaaagacataCGAGGTTACAG
ATCCTGCCACTCACGTCGTCATTGCAAGAGTCCCCTCAATGGGTGCAGCG
GATACACGAGGGGCCATTGaagcggcggccgccgcatGGGAAGGATGGAA
ACAGAAGACCCCCAAGCAACGGGGAGACGTGCTTCGACGGTGGTACGATT
TGATTCAGCACCACACCATGGACCTGGCGAAGATATTGACGCTGGAGAAC
GGAAAGCCTTTGGCGGAGtcgcggggggaggtgggctACGGGGCCAGTTT
TGTGGAGTTTTATGCCGAAGAAGCGAAGCGCACGTACGGGGAGGTGATCC
CTTCGCCCACCCCGGGTCGCCGCCTGGTCACCATCAAGCAACCTGTGGGT
GTAGCTGCCCTGATCACTCCTTGGAACTTTCCCATCGCCATGATCACGCG
CAAAGCCGCCCCTGCGCTGGCGGCAGGCTGCCCCGTGGTGATCAAGCCAG
CCGAGGACACCCCGCtctccgccctggcccttgcGGAGCTGGCAGAACGT
GCGGGGGTGCCTCCCGGGATCCTTAACGTGCTCACTTGCCCCCGGGAACA
CGCGGCCGAAGTGGGTCTGGAACTCAGCACCAGCCTGAACGTGCGGAAGC
TCTCCTTTACGGGTTCCACCAAGGTGGGGAAAATCCTGATGCGGGACTCT
GCCTCCACCGTGAAAAAATTGTCCTTGGAACTAGGTGGCAATGCTCCTTT
GATCGTCTTTGACGATGCGGACATCGAAAATGCCATCAATGGCGTCCTGG
CCGCCAAATTTCGAAATGCGGGCCAGACCTGCGTGTCCCCCAACCGGCTT
CTGGTGCAATCCAGGATCTACGACGAATTCGTAAGCACCCTCGCAGAAAA
AGTCGCCAATCTCCAAGTCGGGCACGGTCTTCAACCAGGGGTGCAGGTAA
GCCATTTTCTTAAAAGATTAAATCTCGCCTCGCTTTTTCACTCTTGTCGC
TTTGGAAAGCAGTCCCCTCGCCGGTGTCATGGAGGCATGCAACCTCTCGG
ACTGTGGAATCGTTTGGCCATGAATATATTACACATGTATCCTGTGTATA
TTCTTGGGAGCTCAAAAGACGAATGCTTATCACCGAGGGGGCTTGGCTCA
CGTCGCGGGtaattcctcccctccttccccttcccccccccctagaTCGG
TCCCCTAATCAATCCAGGCGGCTTGGAGAAAGTGCAGCGTCATGTGCACG
ACGCGGTCAAGAAAGGAGCACAGGTGGTGACGGGAGGCGACCTTCACGCG
CTGGGCGGCACGTTCTTTGAACCCACCGTCCTCGGAGATTGCCGGCCGGA
CATGTTGGTATTCACCGAAGAAACCTTCGGTCCTGTCTGCTCGGTGTTTA
AATTTCAGGCGGAAGCGGAAGCGATCGAGATGGCGAATGCCACGCCCTTC
GGCTTAGCCGCCTATGTGTTCGCGGGAGACGTGGGCAAAGGATGGAGGGT
CGCCGAGGCGATCGAGGCAGGTATGGTGGGTGTGAATGAGGGAATGATCT
CCACTGCAGTCGCCCCCTTTGGAGGAGTCAAGGAGAGCGgcgtagggagg
gagggggctaAGGTGGGAATCGACGAGTACCTGGAGACTAAGTACCTGTG
CCTAGGAAGTTTTCGGTAGGAAAAGCAGAAGGCAGATGGGGGGAAAAGTC
GACGCGAATTTCCGGACAGAaatggggcaggaggcgatAAAATAGACGAA
AAGATTCGGAGAACAAACAAGTCATGCTGTATCTTCCTTCCAAGAATCTA
TGGTGCTTGTGAAATGAGGAGTCGGCTTTAATTCTGGTTGCGACTCT

Coding sequence (CDS) from alignment at CM002463.1:217913..220109+

>rna4301 ID=rna4301|Name=rna4301|organism=Nannochloropsis gaditana|type=CDS|length=3426bp|location=Sequence derived from alignment at CM002463.1:217913..220109+ (Nannochloropsis gaditana)
ATGCTCCGTCACCTCGTCCGACGTACGTCTTCTATCCGGGCGGCATTTCC
TCCTGATTCCTGGCAAGCGTTCAccgcttgcctccctcgcaccTCGAGGT
TCATGGTTGGTCAACTTGACGCAGTTGCCGCTTCTGCGGCCCTGCATCCC
ATTCATCCTCCCAACCATTCCCGAGGACTTACAACGGGAACAACACTTAC
GGGAAATGCGGCTTCAAACATCCACGCGGCTTCAGCGGAAAGTGCCAGTG
AATTTCTTGACGATCCTGGCTTGCTCAGGGACGAGGCGTACGTGAATGGG
AAGTGGGTGAAagccaagggaggaaagacataCGAGGTTACAGATCCTGC
CACTCACGTCGTCATTGCAAGAGTCCCCTCAATGGGTGCAGCGGATACAC
GAGGGGCCATTGaagcggcggccgccgcatGGGAAGGATGGAAACAGAAG
ACCCCCAAGCAACGGGGAGACGTGCTTCGACGGTGGTACGATTTGATTCA
GCACCACACCATGGACCTGGCGAAGATATTGACGCTGGAGAACGGAAAGC
CTTTGGCGGAGtcgcggggggaggtgggctACGGGGCCAGTTTTGTGGAG
TTTTATGCCGAAGAAGCGAAGCGCACGTACGGGGAGGTGATCCCTTCGCC
CACCCCGGGTCGCCGCCTGGTCACCATCAAGCAACCTGTGGGTGTAGCTG
CCCTGATCACTCCTTGGAACTTTCCCATCGCCATGATCACGCGCAAAGCC
GCCCCTGCGCTGGCGGCAGGCTGCCCCGTGGTGATCAAGCCAGCCGAGGA
CACCCCGCtctccgccctggcccttgcGGAGCTGGCAGAACGTGCGGGGG
TGCCTCCCGGGATCCTTAACGTGCTCACTTGCCCCCGGGAACACGCGGCC
GAAGTGGGTCTGGAACTCAGCACCAGCCTGAACGTGCGGAAGCTCTCCTT
TACGGGTTCCACCAAGGTGGGGAAAATCCTGATGCGGGACTCTGCCTCCA
CCGTGAAAAAATTGTCCTTGGAACTAGGTGGCAATGCTCCTTTGATCGTC
TTTGACGATGCGGACATCGAAAATGCCATCAATGGCGTCCTGGCCGCCAA
ATTTCGAAATGCGGGCCAGACCTGCGTGTCCCCCAACCGGCTTCTGGTGC
AATCCAGGATCTACGACGAATTCGTAAGCACCCTCGCAGAAAAAGTCGCC
AATCTCCAAGTCGGGCACGGTCTTCAACCAGGGGTGCAGaTCGGTCCCCT
AATCAATCCAGGCGGCTTGGAGAAAGTGCAGCGTCATGTGCACGACGCGG
TCAAGAAAGGAGCACAGGTGGTGACGGGAGGCGACCTTCACGCGCTGGGC
GGCACGTTCTTTGAACCCACCGTCCTCGGAGATTGCCGGCCGGACATGTT
GGTATTCACCGAAGAAACCTTCGGTCCTGTCTGCTCGGTGTTTAAATTTC
AGGCGGAAGCGGAAGCGATCGAGATGGCGAATGCCACGCCCTTCGGCTTA
GCCGCCTATGTGTTCGCGGGAGACGTGGGCAAAGGATGGAGGGTCGCCGA
GGCGATCGAGGCAGGTATGGTGGGTGTGAATGAGGGAATGATCTCCACTG
CAGTCGCCCCCTTTGGAGGAGTCAAGGAGAGCGgcgtagggagggagggg
gctaAGGTGGGAATCGACGAGTACCTGGAGACTAAGTACCTGTGCCTAGG
AAGTTTTCGGTAGATGCTCCGTCACCTCGTCCGACGTACGTCTTCTATCC
GGGCGGCATTTCCTCCTGATTCCTGGCAAGCGTTCAccgcttgcctccct
cgcaccTCGAGGTTCATGGTTGGTCAACTTGACGCAGTTGCCGCTTCTGC
GGCCCTGCATCCCATTCATCCTCCCAACCATTCCCGAGGACTTACAACGG
GAACAACACTTACGGGAAATGCGGCTTCAAACATCCACGCGGCTTCAGCG
GAAAGTGCCAGTGAATTTCTTGACGATCCTGGCTTGCTCAGGGACGAGGC
GTACGTGAATGGGAAGTGGGTGAAagccaagggaggaaagacataCGAGG
TTACAGATCCTGCCACTCACGTCGTCATTGCAAGAGTCCCCTCAATGGGT
GCAGCGGATACACGAGGGGCCATTGaagcggcggccgccgcatGGGAAGG
ATGGAAACAGAAGACCCCCAAGCAACGGGGAGACGTGCTTCGACGGTGGT
ACGATTTGATTCAGCACCACACCATGGACCTGGCGAAGATATTGACGCTG
GAGAACGGAAAGCCTTTGGCGGAGtcgcggggggaggtgggctACGGGGC
CAGTTTTGTGGAGTTTTATGCCGAAGAAGCGAAGCGCACGTACGGGGAGG
TGATCCCTTCGCCCACCCCGGGTCGCCGCCTGGTCACCATCAAGCAACCT
GTGGGTGTAGCTGCCCTGATCACTCCTTGGAACTTTCCCATCGCCATGAT
CACGCGCAAAGCCGCCCCTGCGCTGGCGGCAGGCTGCCCCGTGGTGATCA
AGCCAGCCGAGGACACCCCGCtctccgccctggcccttgcGGAGCTGGCA
GAACGTGCGGGGGTGCCTCCCGGGATCCTTAACGTGCTCACTTGCCCCCG
GGAACACGCGGCCGAAGTGGGTCTGGAACTCAGCACCAGCCTGAACGTGC
GGAAGCTCTCCTTTACGGGTTCCACCAAGGTGGGGAAAATCCTGATGCGG
GACTCTGCCTCCACCGTGAAAAAATTGTCCTTGGAACTAGGTGGCAATGC
TCCTTTGATCGTCTTTGACGATGCGGACATCGAAAATGCCATCAATGGCG
TCCTGGCCGCCAAATTTCGAAATGCGGGCCAGACCTGCGTGTCCCCCAAC
CGGCTTCTGGTGCAATCCAGGATCTACGACGAATTCGTAAGCACCCTCGC
AGAAAAAGTCGCCAATCTCCAAGTCGGGCACGGTCTTCAACCAGGGGTGC
AGaTCGGTCCCCTAATCAATCCAGGCGGCTTGGAGAAAGTGCAGCGTCAT
GTGCACGACGCGGTCAAGAAAGGAGCACAGGTGGTGACGGGAGGCGACCT
TCACGCGCTGGGCGGCACGTTCTTTGAACCCACCGTCCTCGGAGATTGCC
GGCCGGACATGTTGGTATTCACCGAAGAAACCTTCGGTCCTGTCTGCTCG
GTGTTTAAATTTCAGGCGGAAGCGGAAGCGATCGAGATGGCGAATGCCAC
GCCCTTCGGCTTAGCCGCCTATGTGTTCGCGGGAGACGTGGGCAAAGGAT
GGAGGGTCGCCGAGGCGATCGAGGCAGGTATGGTGGGTGTGAATGAGGGA
ATGATCTCCACTGCAGTCGCCCCCTTTGGAGGAGTCAAGGAGAGCGgcgt
agggagggagggggctaAGGTGGGAATCGACGAGTACCTGGAGACTAAGT
ACCTGTGCCTAGGAAGTTTTCGGTAG

Synonyms

Publications