rna43, rna43 (mRNA) Nannochloropsis gaditana

Overview
Namerna43
Unique Namerna43
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1447
Alignment locationCM002455.1:122041..123529 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100806g1.1300.mrna
Orig protein idgnl|cribi|Naga_100806g1.1300
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:122041..123529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100806g1gene41Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna43rna43-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30630.1cds43Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna43 ID=rna43|Name=rna43|organism=Nannochloropsis gaditana|type=mRNA|length=1447bp
CTCAGACCCGGTGACAACTCCCTCCTCAAGCTTTGTTGCGAACTCTACGA
GCGCACCGGCAAGACCTGGATCTTCGACATGGAGGCTGTCTTCCTCATTC
TGCAATTCAAGTGGAGCGCCTTCGGTCGCCCCATCTACACGGGCCTTCTC
TCCCTCTCCCTCCTCCTCGCCATCAACTACTCCCTTTCCACTGCCTACCT
CCTCCCCTTGCTCCGCTCGCGCGTCTCCTGGAGACAAACCTGTGGCTGGA
TCTGGCAATCCTTCCTTCTCCTTAACGCAGCCCCACTCCTCGCGTGCGAG
TACTGGCAGTTTCACACGCAGGGTGCGCGCGTGTACTGCTCCTCCTTCTT
CCGCCTCTTCGACCTCCTGACCCTCTCCGCCACCTATGCCTCCCTCGCCC
TCCGCTTTTTCCTCCGAGAAGACGAGCAAGACCTCCGGACGCTCTACCAC
CTCCTCTCAGCCCTCGCTTCCTGGCTCCTGTGGGCCAAGCTGATTGTCTA
TCTGCGCGGCTTTACCGAGACGGGACCTTTGATCCGCATGATCGCCCAAA
TCGTCAAGGATACACGTTTTTTCCTGGTGGTCCTGGCCGTGTCGGTGGTG
GGTTTCAGCAACTGCCTCTATATGCTCTTCCAAGAGGACATCGAGCGGGA
GGACGCCCAGGGCGTGGACAGCCCCATCCGTACCAGCTACGGCTCCCTCT
TCCACACGGCCTTGGTCCTCTTCGCGGCTCTGAACAGCAACCTTGACTAC
CAGCCTTTCAACGCCTCCAACTTCCGGGTATTGGCCTCCCTCATCTACCT
CTTCTACTGCGTCTGCAATACCATCATCCTCCTTAATCTCCTGATCGCCC
TTATGGGTGACTCCTACGACAAGATCCAGGAAAATGCGCAAGCCCAGGGC
CGATACGAGCAGGCGGTATCGGTGTTGGAGATAGAAGCCATGCTTCCTCA
ACGCATATTGCAAGACCCGTGCTTCTTCCCTAGGTGGGTACAAGTCTTAA
GGCCGAAGCCTGGGACCGACGGTGGCCTCATCCAAGATGCTGGAGACCAA
TGGAGCGGCCGTCTTCGGCAAATATACAAGAAGATAGAACAAAGCGAAAA
AAGGCTGAGTCAAGACATTGAGGGCTACTTTGACGTGGCAGGGGCGGAGG
GGAAAGAAGGAGCGGAAAGAAAATTGGTGGAAAAGAAAGGACTGGCGCAG
CGCATGACAACCTTGGAGGACAATGTGGAGGGCTTGCAAGCTAAACTCGA
TCAAGTCTTGGCACTCTTACAGTCAGCAGTGCAGGAGGTGGATACGACGG
ACGATGAAGCGGAGGATGAGCATCGAACATCTGGATGAAAAAAAGGAGAA
AAGTTCTGAACAGTTGGTGACAACTTTCTACTTCCATGTCATGACTTGTT
GCCTAATTTGTCCACAAAGTACAATTAGTTCTCCATATGTATAAATT
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protein sequence of rna43

>rna43-protein ID=rna43-protein|Name=rna43|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MPLQPLSSLARPAQETGDSQSFLPTSPSSLSSSPSPFRKRRTGFGRFEIS
KHLHAYRHGKLSKEELCSYLKIHRHDLLVEDAGEGNIVHGLIRKGHTRAL
LQVVLPNIPEVVLALERSRAGDGQSGVTLLRRAVERKDRAVVEGIVKVGR
EGENEGGREGGRVETNSGRRVCRQARLRGGREGGREEGR
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mRNA from alignment at CM002455.1:122041..123529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna43 ID=rna43|Name=rna43|organism=Nannochloropsis gaditana|type=mRNA|length=1489bp|location=Sequence derived from alignment at CM002455.1:122041..123529- (Nannochloropsis gaditana)
CATCGAATGTGTGGTCTTTGGAGTATGGCTCGACATGTCCATGCATGCAT
CCTCAAAGTATGACACGACACGACACCCCAACATAGACTTTAGCTGTACA
TACAGGCGTGATCAGTCACAATTTACATAAAATATATACATTCGTTTTAT
CGCAGGAGACGCTTGGGTGTACGCAGGGAAGGAGAAGGAAGAAAGCAGGT
TTTACAGCATAATTTAAGCTGTCGATGCCCCTCCAACCGCTTTCCTCCCT
CGCCCGCCCGGCGCAGGAAACAGGCGACTCTCAATCTTTCCTACCTACAT
CACCTTCCTCCCTCTCCTCGTCTCCGTCGCCCTTCCGCAAACGGCGCACA
GGGTTTGGCAGGTTCGAAATTTCTGTAAGTATGGGGCTGAGTGTCGAGAA
GGTCGCCTCGCCTCTTTTTGTGACGAAAGTTTCGGGCAATCACACTACCA
TTGCCTTTTCACACCTCCTTCTTCCTCGAATCGTATCCTTAGAAACACCT
GCACGCCTACAGGCACGGAAAATTAAGCAAGGAGGAGCTGTGCAGCTACC
TGAAAATCCATCGGCACGACCTGCTGGTGGAGGACGCGGGGGAGGGCAAT
ATCGTGCATGGTAAGGGAAAGGAGGGGCAGAGAGTCGACGACGGGATGGC
TCCTGAAGGACGGAGAATGGAATGTACACGAAGGGCAGGACAGCGAGGGT
GCGGGGGAAGCTGTGGCATGCTTTCGTTCCTCCCCAAGGCTGCGTCCTAA
TCTACGTATGTCCATGCTGCAGGGCTGATAAGAAAGGGCCACACGCGCGC
CCTACTCCAAGTTGTGCTTCCGAACATTCCCGAGGTAACATGTGGGAAAG
GCGGAGGGGCCAAGCAAGGGATGCTCTGGCCTCTGTCGGTGCCGGAAAGG
GCTGGGGGGGCTCATCGCTTGCTCGGGCATCGCCTTTTTTCTTTGTTTCC
TTTGGATCTTCTGCCTCCCTGCGCTTCATGTTTATGAATTCTTCTTTGAA
TCTCCTGCCTCTCACCCTTCCCCTTCTTTACTACGTTGCTTTACCTCCTG
TCTCCCTCCCTCCCCCTTGTCTTCTCCCCTTGCCACGGCTTCCGCCTTCC
GCATGCGGGGCATGCTCACTCTCTTTCCCCTTCCTTCGTCCTTCCAGGAC
AAGGAGTACCCAAGCTCCGCCGATCGACCCTCTCGGTCCACACCCCACGC
CCTCGCCCCTGCCTCACCCCGCCCTCTCTCCCTCCTTCCCGGGTACCCAG
GTCGTGCTGGCTCTGGAGCGATCGCGCGCGGGGGACGGACAGAGTGGCGT
CACCCTACTGCGTCGTGCTGTGGAGAGGAAGGATCGGGCGGTAGTGGAAG
GCATCGTCAAGGTCGGGAGGGAGGGAGAGAACGAGGGAGGGAGGGAGGGT
GGGAGGGTAGAGACAAACTCAGGCAGACGAGTCTGCCGCCAAGCGAGGCT
GAGAGGGGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGA
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Coding sequence (CDS) from alignment at CM002455.1:122041..123529-

>rna43 ID=rna43|Name=rna43|organism=Nannochloropsis gaditana|type=CDS|length=2276bp|location=Sequence derived from alignment at CM002455.1:122041..123529- (Nannochloropsis gaditana)
GTCGTGCTGGCTCTGGAGCGATCGCGCGCGGGGGACGGACAGAGTGGCGT
CACCCTACTGCGTCGTGCTGTGGAGAGGAAGGATCGGGCGGTAGTGGAAG
GCATCGTCAAGGTCGGGAGGGAGGGAGAGAACGAGGGAGGGAGGGAGGGT
GGGAGGGTAGAGACAAACTCAGGCAGACGAGTCTGCCGCCAAGCGAGGCT
GAGAGGGGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGCTGATAAGA
AAGGGCCACACGCGCGCCCTACTCCAAGTTGTGCTTCCGAACATTCCCGA
GAAACACCTGCACGCCTACAGGCACGGAAAATTAAGCAAGGAGGAGCTGT
GCAGCTACCTGAAAATCCATCGGCACGACCTGCTGGTGGAGGACGCGGGG
GAGGGCAATATCGTGCATGATGCCCCTCCAACCGCTTTCCTCCCTCGCCC
GCCCGGCGCAGGAAACAGGCGACTCTCAATCTTTCCTACCTACATCACCT
TCCTCCCTCTCCTCGTCTCCGTCGCCCTTCCGCAAACGGCGCACAGGGTT
TGGCAGGTTCGAAATTTCTGTCGTGCTGGCTCTGGAGCGATCGCGCGCGG
GGGACGGACAGAGTGGCGTCACCCTACTGCGTCGTGCTGTGGAGAGGAAG
GATCGGGCGGTAGTGGAAGGCATCGTCAAGGTCGGGAGGGAGGGAGAGAA
CGAGGGAGGGAGGGAGGGTGGGAGGGTAGAGACAAACTCAGGCAGACGAG
TCTGCCGCCAAGCGAGGCTGAGAGGGGGGAGGGAGGGAGGGAGGGAGGAA
GGGAGGGAGGCTGATAAGAAAGGGCCACACGCGCGCCCTACTCCAAGTTG
TGCTTCCGAACATTCCCGAGAAACACCTGCACGCCTACAGGCACGGAAAA
TTAAGCAAGGAGGAGCTGTGCAGCTACCTGAAAATCCATCGGCACGACCT
GCTGGTGGAGGACGCGGGGGAGGGCAATATCGTGCATGATGCCCCTCCAA
CCGCTTTCCTCCCTCGCCCGCCCGGCGCAGGAAACAGGCGACTCTCAATC
TTTCCTACCTACATCACCTTCCTCCCTCTCCTCGTCTCCGTCGCCCTTCC
GCAAACGGCGCACAGGGTTTGGCAGGTTCGAAATTTCTGTCGTGCTGGCT
CTGGAGCGATCGCGCGCGGGGGACGGACAGAGTGGCGTCACCCTACTGCG
TCGTGCTGTGGAGAGGAAGGATCGGGCGGTAGTGGAAGGCATCGTCAAGG
TCGGGAGGGAGGGAGAGAACGAGGGAGGGAGGGAGGGTGGGAGGGTAGAG
ACAAACTCAGGCAGACGAGTCTGCCGCCAAGCGAGGCTGAGAGGGGGGAG
GGAGGGAGGGAGGGAGGAAGGGAGGGAGGCTGATAAGAAAGGGCCACACG
CGCGCCCTACTCCAAGTTGTGCTTCCGAACATTCCCGAGAAACACCTGCA
CGCCTACAGGCACGGAAAATTAAGCAAGGAGGAGCTGTGCAGCTACCTGA
AAATCCATCGGCACGACCTGCTGGTGGAGGACGCGGGGGAGGGCAATATC
GTGCATGATGCCCCTCCAACCGCTTTCCTCCCTCGCCCGCCCGGCGCAGG
AAACAGGCGACTCTCAATCTTTCCTACCTACATCACCTTCCTCCCTCTCC
TCGTCTCCGTCGCCCTTCCGCAAACGGCGCACAGGGTTTGGCAGGTTCGA
AATTTCTGTCGTGCTGGCTCTGGAGCGATCGCGCGCGGGGGACGGACAGA
GTGGCGTCACCCTACTGCGTCGTGCTGTGGAGAGGAAGGATCGGGCGGTA
GTGGAAGGCATCGTCAAGGTCGGGAGGGAGGGAGAGAACGAGGGAGGGAG
GGAGGGTGGGAGGGTAGAGACAAACTCAGGCAGACGAGTCTGCCGCCAAG
CGAGGCTGAGAGGGGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGCT
GATAAGAAAGGGCCACACGCGCGCCCTACTCCAAGTTGTGCTTCCGAACA
TTCCCGAGAAACACCTGCACGCCTACAGGCACGGAAAATTAAGCAAGGAG
GAGCTGTGCAGCTACCTGAAAATCCATCGGCACGACCTGCTGGTGGAGGA
CGCGGGGGAGGGCAATATCGTGCATGATGCCCCTCCAACCGCTTTCCTCC
CTCGCCCGCCCGGCGCAGGAAACAGGCGACTCTCAATCTTTCCTACCTAC
ATCACCTTCCTCCCTCTCCTCGTCTCCGTCGCCCTTCCGCAAACGGCGCA
CAGGGTTTGGCAGGTTCGAAATTTCT
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Synonyms
Publications