rna4295, rna4295 (mRNA) Nannochloropsis gaditana

Overview
Namerna4295
Unique Namerna4295
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length288
Alignment locationCM002463.1:202601..204066 +

Link to JBrowse

Properties
Property NameValue
Product40s ribosomal protein s3-3
Orig transcript idgnl|cribi|Naga_100031g39.2241.mrna
Orig protein idgnl|cribi|Naga_100031g39.2241
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:202601..204066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100031g39gene4140Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4295rna4295-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26358.1cds4285Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4295 ID=rna4295|Name=rna4295|organism=Nannochloropsis gaditana|type=mRNA|length=288bp
ATGTCATTTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
TCCTTCCGTCCTTCTTCTTCTCCCTCCCTCCCAGGCAAGTGACTACGGCG
TGACGGTGGGCGGCATCTACAAATACTCTGCCTCCACCACGCTGCGGGCC
AAGACCAGCCTGAACGGTCTACTTGCCTTCTCCGCCATCCACGACGTTCA
CCCCAAGGTTCAACTCTCAGCGACGGTCGAGGGCTCTGCCAAGACCCTCC
AGGACTACAGGATTGGTTTTGGAACGGTCTTGGGATAG
back to top

protein sequence of rna4295

>rna4295-protein ID=rna4295-protein|Name=rna4295|organism=Nannochloropsis gaditana|type=polypeptide|length=243bp
MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIII
SATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQA
QAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEVIVSGKLRAQRAKSM
KFQDGYMIKSGQAKREYVDYAVRHVLMRQGVLGVKVKIMLPHDPAGKIGP
KAKLSDVVNVLEPKEEIELPVPEPVTMSYGGMGGMAPAPMASY
back to top

mRNA from alignment at CM002463.1:202601..204066+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4295 ID=rna4295|Name=rna4295|organism=Nannochloropsis gaditana|type=mRNA|length=1466bp|location=Sequence derived from alignment at CM002463.1:202601..204066+ (Nannochloropsis gaditana)
GGGGTTGGGATTGATGTGCCAGTCGTTGGTGGTGATGAGGGTCGTGTGGT
AGCGGTAGGAGTGAGGGAGCCTTCGCTCTCACAGTCTTGGAGTGTATGCT
CAAGGAGCCATCAGAATTTCATTAACATACATGGATACGTGTACGAATGA
TATGGTAACGATGTGTGATGAGCACAGGCCCTGATCCTTGAAAGAGTATT
ACCACTAGCTGTCATGCTCACGGCCCTCATATAATTCTTTCCCATCCCGC
CAAACGCTTCACGCTTTGCTCTGGCACAGTCAACCATGACCACCAACATC
TCCAAGAAAAGGAAGTTTATTGCGGATGGTGTCTTTTATGCCGAGCTGAA
CGAGGTACGTAGGCCTGGAGAGGTGCTCATGTATATGTGAGCCTTGGGCC
GCGGGGCTGATGATGGGCTACACACAATAACCACTTTGTCAGAGATCGTC
ACCCTCACTATTGGAGCACACTTGTTTGACTGTCGAGAACTGTAGAAGCA
ACGCCGCTATAGACTCTTCTtttggggaggggcagtAGAGCTCCATGTCA
GTTGAGTTTTCCGTCCTTatcttcgccccccccttaaATTATTTCGCATT
CACAGCTCCTGACGCGTGAGCTGGCTGAGGATGGGTACGCCGGCGTAGAA
GTTCGTGTAGTGCCCCTTCGCACAGAAATCATTATCTCAGCCACGCGTAC
GCAGAATGTGCTGGGTGAGAAAGGCCAGCGCATTCGCGAGCTGACTACGG
TGATCCAGAAACGCTTTAATTTTCCCGACGGTGTCGTTGAACTTTTTGCT
GAGAAGGTAGCATCACGAGGACTCTGCGCACAAGCCCAGGCCGAGTCTTT
GAAGTACAAGCTGCTGGGGGGCCTGGCGGTCCGACGAGCTTGCTACGGCG
TGCTTCGTTTTGTGATGGAGCAGGGTGCCAAGGGTGCCGAGGTCATTGTC
TCGGGCAAGCTCCGTGCGCAGCGTGCCAAGAGCATGAAATTCCAGGACGG
GTACATGATCAAGTCCGGGCAGGCGAAGCGAGAATACGTGGATTACGCAG
TGCGGCATGTGCTGATGCGTCAAGGTGTATTGGGTGTCAAGGTGAAAATC
ATGCTGCCGCACGACCCTGCTGGCAAGATTGGCCCGAAAGCTAAATTGTC
GGATGTGGTGAATGTGCTGGAgcccaaggaggagatcgaaTTGCCTGTTC
CCGAGCCAGTAACGATGTCATACGGGGGGATGGGTGGGATGGCACCCGCA
CCCATGGCTTCTTACTGAGGAGCGAAGGATGAAAGGGATTGAGAGGAAGA
CTGCCCTATGCAGAAGATTGCTTTGGTAGCTTGTCGATCTGGAACATCAT
TTACAAGCTGCTGGCATGTCATCTTCTTGTTTGGCGTGAAGAGGTGTTGC
TGCAAGGGAGGTTAGAAGGAAGACTCGAAGTttcaaggaaaagaaaagaa
aatcgGGCATTCGAAG
back to top

Coding sequence (CDS) from alignment at CM002463.1:202601..204066+

>rna4295 ID=rna4295|Name=rna4295|organism=Nannochloropsis gaditana|type=CDS|length=1464bp|location=Sequence derived from alignment at CM002463.1:202601..204066+ (Nannochloropsis gaditana)
ATGACCACCAACATCTCCAAGAAAAGGAAGTTTATTGCGGATGGTGTCTT
TTATGCCGAGCTGAACGAGCTCCTGACGCGTGAGCTGGCTGAGGATGGGT
ACGCCGGCGTAGAAGTTCGTGTAGTGCCCCTTCGCACAGAAATCATTATC
TCAGCCACGCGTACGCAGAATGTGCTGGGTGAGAAAGGCCAGCGCATTCG
CGAGCTGACTACGGTGATCCAGAAACGCTTTAATTTTCCCGACGGTGTCG
TTGAACTTTTTGCTGAGAAGGTAGCATCACGAGGACTCTGCGCACAAGCC
CAGGCCGAGTCTTTGAAGTACAAGCTGCTGGGGGGCCTGGCGGTCCGACG
AGCTTGCTACGGCGTGCTTCGTTTTGTGATGGAGCAGGGTGCCAAGGGTG
CCGAGGTCATTGTCTCGGGCAAGCTCCGTGCGCAGCGTGCCAAGAGCATG
AAATTCCAGGACGGGTACATGATCAAGTCCGGGCAGGCGAAGCGAGAATA
CGTGGATTACGCAGTGCGGCATGTGCTGATGCGTCAAGGTGTATTGGGTG
TCAAGGTGAAAATCATGCTGCCGCACGACCCTGCTGGCAAGATTGGCCCG
AAAGCTAAATTGTCGGATGTGGTGAATGTGCTGGAgcccaaggaggagat
cgaaTTGCCTGTTCCCGAGCCAGTAACGATGTCATACGGGGGGATGGGTG
GGATGGCACCCGCACCCATGGCTTCTTACTGAATGACCACCAACATCTCC
AAGAAAAGGAAGTTTATTGCGGATGGTGTCTTTTATGCCGAGCTGAACGA
GCTCCTGACGCGTGAGCTGGCTGAGGATGGGTACGCCGGCGTAGAAGTTC
GTGTAGTGCCCCTTCGCACAGAAATCATTATCTCAGCCACGCGTACGCAG
AATGTGCTGGGTGAGAAAGGCCAGCGCATTCGCGAGCTGACTACGGTGAT
CCAGAAACGCTTTAATTTTCCCGACGGTGTCGTTGAACTTTTTGCTGAGA
AGGTAGCATCACGAGGACTCTGCGCACAAGCCCAGGCCGAGTCTTTGAAG
TACAAGCTGCTGGGGGGCCTGGCGGTCCGACGAGCTTGCTACGGCGTGCT
TCGTTTTGTGATGGAGCAGGGTGCCAAGGGTGCCGAGGTCATTGTCTCGG
GCAAGCTCCGTGCGCAGCGTGCCAAGAGCATGAAATTCCAGGACGGGTAC
ATGATCAAGTCCGGGCAGGCGAAGCGAGAATACGTGGATTACGCAGTGCG
GCATGTGCTGATGCGTCAAGGTGTATTGGGTGTCAAGGTGAAAATCATGC
TGCCGCACGACCCTGCTGGCAAGATTGGCCCGAAAGCTAAATTGTCGGAT
GTGGTGAATGTGCTGGAgcccaaggaggagatcgaaTTGCCTGTTCCCGA
GCCAGTAACGATGTCATACGGGGGGATGGGTGGGATGGCACCCGCACCCA
TGGCTTCTTACTGA
back to top
Synonyms
Publications