rna4294, rna4294 (mRNA) Nannochloropsis gaditana

Overview
Namerna4294
Unique Namerna4294
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length258
Alignment locationCM002463.1:200610..201333 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100031g41.2238.mrna
Orig protein idgnl|cribi|Naga_100031g41.2238
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:200610..201333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100031g41gene4139Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4294rna4294-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26355.1cds4284Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4294 ID=rna4294|Name=rna4294|organism=Nannochloropsis gaditana|type=mRNA|length=258bp
ATGAGCAAGACTACTCCGGCTTTTTTCAAGGACTTTAACAAACCTGCGGA
CACTATCCTTAACGATGACTATTCGTTGAAACGCACCCTCAAGGTCAAAC
ACGTCACGCCCGATGGAGTGGCCGTGACCACGGAGAATGAACTGACAGGC
AAGGACGGCAAATTCGACCTTAAGGCGAAGATCTCCGGCAAGTACAAGCA
CGCGGCCACGGGCTTCTCTGTGGACAAGCTCCAGCTCAAGGAAACTGGCG
GCCTGTGA
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protein sequence of rna4294

>rna4294-protein ID=rna4294-protein|Name=rna4294|organism=Nannochloropsis gaditana|type=polypeptide|length=95bp
MSFLPPSLPPSLPPSLLPSVLLLLPPSQASDYGVTVGGIYKYSASTTLRA
KTSLNGLLAFSAIHDVHPKVQLSATVEGSAKTLQDYRIGFGTVLG
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mRNA from alignment at CM002463.1:200610..201333+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4294 ID=rna4294|Name=rna4294|organism=Nannochloropsis gaditana|type=mRNA|length=724bp|location=Sequence derived from alignment at CM002463.1:200610..201333+ (Nannochloropsis gaditana)
Atgtcatttcttcctccctccctccctccctccctccctccctccctcct
tccttccgtccttcttcttctccctccctcccaggcaaGTCCGGCCTCGA
CTACTCTGTCTACGGCGTGTTCAAGACCAGCCCGCCGCTCTCGGTCGCCG
GCAAGCTCACATACCCGTCGAGTGGTACGGAATGAGGGTGTAGGGGTGGC
TGCACAACCGAGGGAGcccaggaggggaaggacagagaCGCGTGCTTGCG
GGGGTCCTCGTCTTTgcgatccgatcttctccttcggtcacgtccccgcc
ttcctctctccttccctccctccctccctcccaggtgaCTACGGCGTGAC
GGTGGGCGGCATCTACAAATactctgcctccaccacgctgCGGGCCAAGA
CCAGCCTGAACGGTCTActtgccttctccgccatccacgtaaggaaggga
gatggagggagggaaagaggaagggaaaaagggagggtgggaggaagatg
aggtgCCCTCCAACATTCTGACTCCTATGAGTTGCTCTGCTTTTTGAGTT
CTGGGCTTTAAGGCACTTACCCCTTaattctccttgctctccttccctcc
ctccctccctccctcattcctgtCTCAGGACGTTCACCCCAAGGTTCAAC
TCTCAGCGACGGTCGAGGGCTCTGCCAAGACCCTCCAGGACTACAGGATT
GGTTTTGGAACGGTCTTGGGATAG
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Coding sequence (CDS) from alignment at CM002463.1:200610..201333+

>rna4294 ID=rna4294|Name=rna4294|organism=Nannochloropsis gaditana|type=CDS|length=864bp|location=Sequence derived from alignment at CM002463.1:200610..201333+ (Nannochloropsis gaditana)
Atgtcatttcttcctccctccctccctccctccctccctccctccctcct
tccttccgtccttcttcttctccctccctcccaggcaagtgaCTACGGCG
TGACGGTGGGCGGCATCTACAAATactctgcctccaccacgctgCGGGCC
AAGACCAGCCTGAACGGTCTActtgccttctccgccatccacGACGTTCA
CCCCAAGGTTCAACTCTCAGCGACGGTCGAGGGCTCTGCCAAGACCCTCC
AGGACTACAGGATTGGTTTTGGAACGGTCTTGGGATAGAtgtcatttctt
cctccctccctccctccctccctccctccctccctccttccttccgtcct
tcttcttctccctccctcccaggcaagtgaCTACGGCGTGACGGTGGGCG
GCATCTACAAATactctgcctccaccacgctgCGGGCCAAGACCAGCCTG
AACGGTCTActtgccttctccgccatccacGACGTTCACCCCAAGGTTCA
ACTCTCAGCGACGGTCGAGGGCTCTGCCAAGACCCTCCAGGACTACAGGA
TTGGTTTTGGAACGGTCTTGGGATAGAtgtcatttcttcctccctccctc
cctccctccctccctccctccctccttccttccgtccttcttcttctccc
tccctcccaggcaagtgaCTACGGCGTGACGGTGGGCGGCATCTACAAAT
actctgcctccaccacgctgCGGGCCAAGACCAGCCTGAACGGTCTActt
gccttctccgccatccacGACGTTCACCCCAAGGTTCAACTCTCAGCGAC
GGTCGAGGGCTCTGCCAAGACCCTCCAGGACTACAGGATTGGTTTTGGAA
CGGTCTTGGGATAG
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Synonyms
Publications