rna4293, rna4293 (mRNA) Nannochloropsis gaditana

Overview
Namerna4293
Unique Namerna4293
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1139
Alignment locationCM002463.1:199069..199704 +

Link to JBrowse

Properties
Property NameValue
Productvoltage-dependent anion-selective channel
Orig transcript idgnl|cribi|Naga_101240g2.5742.mrna
Orig protein idgnl|cribi|Naga_101240g2.5742
GeneVDAC
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:199069..199704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
VDACgene4138Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4293rna4293-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26391.1cds4283Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4293 ID=rna4293|Name=rna4293|organism=Nannochloropsis gaditana|type=mRNA|length=1139bp
TGAGGGCCCCAAAATGTGTTTTCTCTCGGCTGTGGAGAGATGTTCTCCAA
GTAGCGCACCTTAGCCTCTTACTTTTCTCCTTCGACTCGTAACCCTCCAC
AGCTCCGATGGCCGCTGCCGAACCGGCACCACCGCTGTTTCCCTCTCAAA
AAGAGTTAGAAACCTACTGTCAGAGCGCTGAAAATGCTGCGCGGAACGCT
GGTGAGCTTATAATGGCTTCTCTTCGGGCCCGTCAATCCAGACCTTGTTT
GGCCGTGGAGAGCAAAGGGGGGGTAGACTTGGTGACAGAAGTGGACAGGC
TTTGCGAAAAAGAAATCACCCAAGCCCTTCGTGCAGAATACCCAACGCAC
GCTTTCATCGGGGAAGAATCCATATTCCTGTCCACTGGGGAGCTGTCGTC
CTCCTCCGCCCCTTTTGGCCTGCCCGGCGAGTCAGCGCCCACTTGGATCA
TCGACCCCATAGACGGAACTACCAACTTCGTGCACGGTCACCCCTTCATC
GCCGTCGCCATCGGCCTCAGCATCCATCAAGATGTGGTCCTGGGCGTCAT
CTACCTCCCTGTCCTGAACGAAATGTACCGGGCATGGCGAGGGGGTGGGG
CCCGCTGCAACGACGGCCCCCTTTTGAAGGTGAGCGGGGCCCAAAGCATT
CACGACGCCTTACTCGTGAACAACATCGGTTCCTGCCGCGAGCAGGAGTT
CTTGCAACTGTCTTTCCACCGGCTTTACGCCCTCATGACCGCCAAGCTTC
CCGGGCCGTTGCAAGGCCTGCGCATGTCCGGTTCGGCCTGTGTGAACCTC
GCCCTAGTCGCAGGGGGGCGCCTGGACGCCTACGTGGAGGACGGGGTGGG
CGGTGTGTGGGACGTCGCGGCGGGGAAAATATTGGTGGAGGAGGCGGGCG
GGGTGGTGGTGGGGTGGGAGGGGGAGCCGTGGGTGCTGACGATGGGGAGG
GGAAGGGTGATAGCCGGGAATGCCGCGCTAGTCTCTGACCTGGTCGCGCG
GATGAGGGATGTGGACGGGAGGGTCTGGAGACGGAAACGCTTGCGAGTGG
CACTTAAGGTGGGGATGATCGCTCTTATGGGTGTGGGCTTACTGGCGATG
AGGAGGAGGAGAGAAGGGGCCACAAGGCGGTCAGGGTAA
back to top

protein sequence of rna4293

>rna4293-protein ID=rna4293-protein|Name=rna4293|organism=Nannochloropsis gaditana|type=polypeptide|length=85bp
MSKTTPAFFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTG
KDGKFDLKAKISGKYKHAATGFSVDKLQLKETGGL
back to top

mRNA from alignment at CM002463.1:199069..199704+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4293 ID=rna4293|Name=rna4293|organism=Nannochloropsis gaditana|type=mRNA|length=636bp|location=Sequence derived from alignment at CM002463.1:199069..199704+ (Nannochloropsis gaditana)
ATGAGCAAGACTACTCCGGCTTTTTTCAAGGACTTTAACAAACCTGCGGA
CAGTAAGTATTTTTACTTCTTCCAGACAGCTTTACGGACATGACATTGTC
ACCGAGGGACGGGGCTATTGTGGCATGAGTCTGCACGTCGGAAGCGCATC
TTCCTACCAGTCCTCTCTCGGTCTGCGCCCGCCCACTGTGGGTCTAATCT
ACATTTCTATTCTCCTACAGCTATCCTTAACGATGACTATTCGTTGAAAC
GCACCCTCAAGGTCAAACACGTCACGCCCGATGGAGTGGTACGTGAGCCC
GTGACGAGGCCTTTCTGCTTGCCAATCGCCCCCGTGCATTCCtatacctc
cttccctctcccccttcaacGACTGACTCAATTGCTAGTAGTCCTTGTTC
AATTCGAGGCTTGTCGAAGTCGATTGCTTGCATCCCTTTCTCACTCTccg
tcctttctttccccccctccttccctccctcccttgttcgGGGGGCAGGC
CGTGACCACGGAGAATGAACTGACAGGCAAGGACGGCAAATTCGACCTTA
AGGCGAAGATCTCCGGCAAGTACAAGCACGCGGCCACGGGCTTCTCTGTG
GACAAGCTCCAGCTCAAGGAAACTGGCGGCctgtga
back to top

Coding sequence (CDS) from alignment at CM002463.1:199069..199704+

>rna4293 ID=rna4293|Name=rna4293|organism=Nannochloropsis gaditana|type=CDS|length=774bp|location=Sequence derived from alignment at CM002463.1:199069..199704+ (Nannochloropsis gaditana)
ATGAGCAAGACTACTCCGGCTTTTTTCAAGGACTTTAACAAACCTGCGGA
CACTATCCTTAACGATGACTATTCGTTGAAACGCACCCTCAAGGTCAAAC
ACGTCACGCCCGATGGAGTGGCCGTGACCACGGAGAATGAACTGACAGGC
AAGGACGGCAAATTCGACCTTAAGGCGAAGATCTCCGGCAAGTACAAGCA
CGCGGCCACGGGCTTCTCTGTGGACAAGCTCCAGCTCAAGGAAACTGGCG
GCctgtgaATGAGCAAGACTACTCCGGCTTTTTTCAAGGACTTTAACAAA
CCTGCGGACACTATCCTTAACGATGACTATTCGTTGAAACGCACCCTCAA
GGTCAAACACGTCACGCCCGATGGAGTGGCCGTGACCACGGAGAATGAAC
TGACAGGCAAGGACGGCAAATTCGACCTTAAGGCGAAGATCTCCGGCAAG
TACAAGCACGCGGCCACGGGCTTCTCTGTGGACAAGCTCCAGCTCAAGGA
AACTGGCGGCctgtgaATGAGCAAGACTACTCCGGCTTTTTTCAAGGACT
TTAACAAACCTGCGGACACTATCCTTAACGATGACTATTCGTTGAAACGC
ACCCTCAAGGTCAAACACGTCACGCCCGATGGAGTGGCCGTGACCACGGA
GAATGAACTGACAGGCAAGGACGGCAAATTCGACCTTAAGGCGAAGATCT
CCGGCAAGTACAAGCACGCGGCCACGGGCTTCTCTGTGGACAAGCTCCAG
CTCAAGGAAACTGGCGGCctgtga
back to top
Synonyms
Publications