EWM26391.1, cds4283 (CDS) Nannochloropsis gaditana

Overview
NameEWM26391.1
Unique Namecds4283
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:199069..199120 +
Alignment locationCM002463.1:199289..199356 +
Alignment locationCM002463.1:199567..199704 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26391.1
Productvoltage-dependent anion-selective channel
Orig transcript idgnl|cribi|Naga_101240g2.5742.mrna
GeneVDAC
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:199069..199120 +
CM002463.1supercontigCM002463.1:199289..199356 +
CM002463.1supercontigCM002463.1:199567..199704 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR023614Porin_dom
Homology
BLAST of EWM26391.1 vs. NCBI_GenBank
Match: gi|585108403|gb|EWM26391.1| (voltage-dependent anion-selective channel [Nannochloropsis gaditana])

HSP 1 Score: 170.629 bits (431), Expect = 8.953e-54
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0
Query:    1 MSKTTPAFFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETGGL 85
            MSKTTPAFFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETGGL
Sbjct:    1 MSKTTPAFFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETGGL 85          
BLAST of EWM26391.1 vs. NCBI_GenBank
Match: gi|585109984|gb|EWM27711.1| (voltage-dependent anion-selective channel protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 68.9366 bits (167), Expect = 4.465e-12
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 0
Query:    8 FFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETG 83
            FFKDF +    +LNDD++ KR LK+K  TPDGV  T+E EL+ K     + AK++ KYKH  +G S+DKL+ K  G
Sbjct:    2 FFKDFGRSTADLLNDDFTYKRKLKIKLPTPDGVTWTSEGELSSK----GVMAKLAAKYKH-PSGISLDKLEFKSDG 72          
BLAST of EWM26391.1 vs. NCBI_GenBank
Match: gi|299471067|emb|CBN78926.1| (Voltage dependent anion channel [Ectocarpus siliculosus])

HSP 1 Score: 67.3958 bits (163), Expect = 2.440e-11
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 0
Query:    8 FFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELT-GKDGKFDLKAKISGKYKHAATGFSVDKLQLKETGGL 85
            F+ D NK A  IL+DDY+LKRTLK+KH TP GV VT ++E + G +G  +       K+ HA +G S+DK +L   G +
Sbjct:   53 FYNDLNKVARDILSDDYNLKRTLKMKHTTPHGVTVTAKSEHSKGVNGALE------AKFFHAKSGVSIDKAKLNPDGSM 125          
BLAST of EWM26391.1 vs. NCBI_GenBank
Match: gi|325192646|emb|CCA27069.1| (voltagedependent anionselective channel protein puta [Albugo laibachii Nc14])

HSP 1 Score: 58.9214 bits (141), Expect = 2.024e-8
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 0
Query:    7 AFFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETGGL 85
              +KD +K A+ IL DDY   R LK+K    +GV+ TTE E++       + AK++  +KH  TG  + +LQ+   G L
Sbjct:    3 VLYKDISKTAENILKDDYDFSRKLKIKSTASNGVSFTTEGEMSANK---SILAKVTASFKHYNTGLHIKRLQVNTQGRL 78          
BLAST of EWM26391.1 vs. NCBI_GenBank
Match: gi|635365444|emb|CCI46193.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 57.7658 bits (138), Expect = 6.362e-8
Identity = 30/79 (37.97%), Postives = 41/79 (51.90%), Query Frame = 0
Query:    7 AFFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETGGL 85
              +KD  K A+ IL DDY   R LK+K  + +GV  TTE E+        +  KIS  +KH  TG  + +LQ+   G L
Sbjct:    3 VLYKDIAKTAENILKDDYDFSRKLKIKSTSSNGVTFTTEGEMNANK---SILGKISASFKHYNTGLHIKRLQVNTQGRL 78          
BLAST of EWM26391.1 vs. NCBI_GenBank
Match: gi|301090229|ref|XP_002895339.1| (voltage-dependent anion-selective channel protein, putative [Phytophthora infestans T30-4] >gi|262100453|gb|EEY58505.1| voltage-dependent anion-selective channel protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 57.3806 bits (137), Expect = 7.775e-8
Identity = 30/78 (38.46%), Postives = 41/78 (52.56%), Query Frame = 0
Query:    6 PAFFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETG 83
               +KD  K A+ +L DDY   R LK+K    +GV+ TTE  L G      + AK+SG + H A+G    KLQ+   G
Sbjct:    2 AVLYKDLAKTAENVLRDDYDFSRKLKIKSKASNGVSFTTEGALNGNK---SILAKVSGGFTHGASGVVFKKLQITTQG 76          
BLAST of EWM26391.1 vs. NCBI_GenBank
Match: gi|1214710429|gb|OWZ21520.1| (Voltage-dependent anion-selective channel protein [Phytophthora megakarya])

HSP 1 Score: 56.225 bits (134), Expect = 2.203e-7
Identity = 30/76 (39.47%), Postives = 40/76 (52.63%), Query Frame = 0
Query:    8 FFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETG 83
             +KD  K A+ +L DDY   R LK+K    +GVA TTE  L        + AK+SG + H A+G    KLQ+   G
Sbjct:    4 LYKDLAKTAENVLRDDYDFSRKLKIKSKASNGVAFTTEGALNANK---SILAKVSGGFTHGASGVVFKKLQITTQG 76          
BLAST of EWM26391.1 vs. NCBI_GenBank
Match: gi|695431826|ref|XP_009530783.1| (hypothetical protein PHYSODRAFT_354972 [Phytophthora sojae] >gi|348673535|gb|EGZ13354.1| hypothetical protein PHYSODRAFT_354972 [Phytophthora sojae])

HSP 1 Score: 55.0694 bits (131), Expect = 5.308e-7
Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 0
Query:    8 FFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETG 83
             +KD  K A+ +L DDY   R LK+K    +GV+ TTE  L        + AK+SG + H A+G    KLQ+   G
Sbjct:    4 LYKDLAKTAENVLRDDYDFSRKLKIKSKASNGVSFTTEGALNANK---SILAKVSGGFTHGASGVVFKKLQITTQG 76          
BLAST of EWM26391.1 vs. NCBI_GenBank
Match: gi|568040654|gb|ETM38102.1| (hypothetical protein L914_15470 [Phytophthora parasitica])

HSP 1 Score: 55.0694 bits (131), Expect = 6.353e-7
Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 0
Query:    8 FFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETG 83
             +KD  K A+ +L DDY   R LK+K    +GV+ TTE  L        + AK+SG + H A+G    KLQ+   G
Sbjct:    4 LYKDLAKTAENVLRDDYDFSRKLKIKSKASNGVSFTTEGALNANK---SILAKVSGGFTHGASGVVFKKLQITTQG 76          
BLAST of EWM26391.1 vs. NCBI_GenBank
Match: gi|675204517|ref|XP_008911143.1| (hypothetical protein PPTG_15631 [Phytophthora parasitica INRA-310] >gi|566015146|gb|ETI38057.1| hypothetical protein F443_16075 [Phytophthora parasitica P1569] >gi|567952603|gb|ETK78275.1| hypothetical protein L915_15619 [Phytophthora parasitica] >gi|567981262|gb|ETL31705.1| hypothetical protein L916_15515 [Phytophthora parasitica] >gi|568010809|gb|ETL84992.1| hypothetical protein L917_15336 [Phytophthora parasitica] >gi|568088513|gb|ETN03370.1| hypothetical protein PPTG_15631 [Phytophthora parasitica INRA-310] >gi|570318878|gb|ETO66826.1| hypothetical protein F444_16059 [Phytophthora parasitica P1976] >gi|570942685|gb|ETP07942.1| hypothetical protein F441_15904 [Phytophthora parasitica CJ01A1] >gi|570973324|gb|ETP35985.1| hypothetical protein F442_15925 [Phytophthora parasitica P10297] >gi|970633335|gb|KUF79046.1| Voltage-dependent anion-selective channel protein 2 [Phytophthora nicotianae] >gi|970646817|gb|KUF86844.1| hypothetical protein AM588_10001387 [Phytophthora nicotianae] >gi|970658422|gb|KUF96188.1| Voltage-dependent anion-selective channel protein 2 [Phytophthora nicotianae])

HSP 1 Score: 54.6842 bits (130), Expect = 6.612e-7
Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 0
Query:    8 FFKDFNKPADTILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETG 83
             +KD  K A+ +L DDY   R LK+K    +GV+ TTE  L        + AK+SG + H A+G    KLQ+   G
Sbjct:    4 LYKDLAKTAENVLRDDYDFSRKLKIKSKASNGVSFTTEGALNANK---SILAKVSGGFTHGASGVVFKKLQITTQG 76          
The following BLAST results are available for this feature:
BLAST of EWM26391.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108403|gb|EWM26391.1|8.953e-54100.00voltage-dependent anion-selective channel [Nannoch... [more]
gi|585109984|gb|EWM27711.1|4.465e-1248.68voltage-dependent anion-selective channel protein ... [more]
gi|299471067|emb|CBN78926.1|2.440e-1145.57Voltage dependent anion channel [Ectocarpus silicu... [more]
gi|325192646|emb|CCA27069.1|2.024e-836.71voltagedependent anionselective channel protein pu... [more]
gi|635365444|emb|CCI46193.1|6.362e-837.97unnamed protein product [Albugo candida][more]
gi|301090229|ref|XP_002895339.1|7.775e-838.46voltage-dependent anion-selective channel protein,... [more]
gi|1214710429|gb|OWZ21520.1|2.203e-739.47Voltage-dependent anion-selective channel protein ... [more]
gi|695431826|ref|XP_009530783.1|5.308e-738.16hypothetical protein PHYSODRAFT_354972 [Phytophtho... [more]
gi|568040654|gb|ETM38102.1|6.353e-738.16hypothetical protein L914_15470 [Phytophthora para... [more]
gi|675204517|ref|XP_008911143.1|6.612e-738.16hypothetical protein PPTG_15631 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4293rna4293Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications