rna4290, rna4290 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4290
Unique Name	rna4290
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2492
Alignment location	CM002463.1:191398..193655 +

Link to JBrowse

Properties


Property Name	Value
Product	Beta-lactamase/transpeptidase-like protein
Orig transcript id	gnl\|cribi\|Naga_100715g2.2645.mrna
Orig protein id	gnl\|cribi\|Naga_100715g2.2645
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:191398..193655 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100715g2	gene4135	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4290	rna4290-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26394.1	cds4280	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:191398..193655+
coding sequence from alignment at CM002463.1:191398..193655+

mRNA sequence

>rna4290 ID=rna4290|Name=rna4290|organism=Nannochloropsis gaditana|type=mRNA|length=2492bp
CATGCCCGCCTCAAGAAAGTGGTGCAATCCCCTTTGTTTTCAGGCTTATT
CGATCATGTTATCAGAGCAAATTTGCCATGCTTGTGCCTGCCGGCGAGCT
CCTCGTCAATTTCTGTGCTATGGAAGTTGAACCTCCCCGCGTTTTGTGCA
ACCCCGAAAGAACACAAGGCCCTTTCCATCGCACCCATTTCCGGGAACAT
TTTTCCTCAATCATATCCTTGGGGATCTTTTGCCATTTATTCTAGCCACT
AAATCTGCCTTGGAAGCATAGGATGCATCAATCGTCAGTGCAAAAAGAGG
CAGAACGACCCGCCACCCTCAGGCCGGAGCCTGCGATATTCTGCATCAAG
ACGTTCATGCCACATCCAGGTCAGGAAAAAGAGCTGGAAACCCGCCTTCA
AAAGCATTGGGATGCATTGCATGCTGCAGGATTAACAGTACCCAATCAAG
AGCCTTTGTTTCTTCGCAGCCGCGCCGGCCGTGTGTTGGAAGTCTTTGAG
TGGAAAGATGCAGAGGCCATGGAGGAAGCACACCGCCGAGGTGAGCTTCA
GGATACCTGGAAAAAGCTTTTGGAAGTGGGGACCATGGTTCCTCTGGCCT
CTTTGGGGGAGTGTAGCGAGCCGTACGCACACTTTCATGTCGTGCAGCCC
GGCACTCACGAGGTGAAGGACAAAATGGTCAAGATCGTGGCTGTGAAGCC
TCACACTGGAAAATTAAATGACCTGATTGCCAAACTCAAGAAACACGACG
TAGCTTTACGCAAGGCAGGGTACACAACGGGACGGCCGGCCATGCACATG
CGTGGGGAGAAGGAGGGGCACGTGGTGGAGGTTGCCGAATGGGCCTCTGT
GCAGAAAGTGAAAGAGGCGCAGAAAAGCGACGATGTCCACGGATTATGGA
ACGAATTCAACGTGTCGGTAGAGCATAACTGCCCGCTGACGTGCTTGCCG
GAGGCGAAGGATCGGTATTCTCTCTTCCCCGCCATCACCTTGCACACCAT
GAGCGAGTGAGAGGGTGGTGGCCAATTAGCACAAATGTTGCGGTTGACTG
TCGTGTCGTGGGAGGATGCGCGACAGAATCTAAGCTGACGCAGTAATTTC
TGTTTAAGAGGACAGCAATCGCGGTGACATAAGACACAAGGGTGGAGGGG
TAAGCGAGGAAAATGTCGAACTAGTATGCGTAGGGGCCTACCCCGATGTA
GCAACTTAGCACCCTTCACAGCAGGAAGAGGTGAGATCGCGAAGACTTTC
GCCTCGCATCTGATAGTGCGGGATAAGCAGGGAGGTTTCCGACAAAGGCG
AGGCATACAAAAATGGCTGCAGACACATTTACCGCATAACGCACCAGACT
TAGGAGCATGGCGCCGTGTTTTTCATCCCAGGTGCATGATTCTTTCGTAT
TTCAATAATGCCCGATTTGTACTCAAGTTGTTGTTCTCTCAAGGCTTCTT
TCACCCTTTCGGACCACCGCCGTCGCCTTATAAACAATCTCATCTATACC
CGGAAAATCCTTATCTATACCCAAACAATCTTATCCATACCCAGCTCTCG
TCTCGATTCCTTCCAACGCCATTTGAACGGAAAGATAACAAGATCAAACT
CTGATGTGATTCAGCTCCCTGCTCCAGCATATCCTGTAACTTTCTTCAGG
CCCCTGGCCACTGAAGGCACCGCCGCGACACGTTTCGCACAGTACCCTAC
CTGACCGCCTTCAAAAGCCGCAGGCACATTCTACATCTCCACCACTCTTT
CCTTGCCCTCTAAACATGAGTCGCGTAGCAGCATAGATGTCCCTTTATTC
TCACAATGTGGCCCCCTTCCCCCCCTCCCCCCCACCCGATGCAAAACCAA
ACACAATCAGACGACCCCGGATTATGTTCTCCTGTTCCTCACCATGACCA
TGTGGCCTCTAATCTCCCCGAAACTATGTACCGAGCTATCTTTCATGCGT
CCCGCTTGAAGCCGACATGCAAGATCAACACCCCCAGCCCAGAGGCCTTC
TGGACAAGCTCGCGCCCCCCTGCCCGACCCCCCCGCACGGAATACCACCG
CCCGCACCTCGCCTACATCTTGAAAGGGGAGAACAGATCGATCTTGTGGG
AGGAAGAAATCTGCGGGATTTGCGTGTACTTGCCCCGCAGCAGCTGCCGC
ATGTTCTTCAATACCTGGGCATAGTCTTGGTTGGGGCCCTGGCTGAGGAC
TCGAATCAAGGCCCAAGACAAGGCACCCGTGGCCTGCCCGTCAATCCGGG
TGTCGGCGCTCGTCTGGTCGTCCCGACAACCTCCAAATTGGATCACGTCC
GCGGGGCTTTGGTTGTTTTCTTCGGTCCGACGCCGGGCATCGTGGTTCGT
TTTCGGACCAAAGAGCATGGTTCCCACGGCCTCCAAACCCGACATGAGCG
CCACTGCTTTGTTCCCCGACAAGTAGGCCAGCCCAGCGTTGGCAAGGCTG
TTCACCACCTGGAGGACGGGAAGGAGGGTGGGAAACAGGGCG

protein sequence of rna4290

>rna4290-protein ID=rna4290-protein|Name=rna4290|organism=Nannochloropsis gaditana|type=polypeptide|length=556bp
MLRGTEAAAALAGESLPPNSSLPVPPVVAHKCSNTIRGAFNDIILKNKGF
GGGILRIESLARGLLWEGSWGKVQHSSKEEDMTPSTRFEIASITKTFVAS
TLMLLLARHSLSDFRTNSNLDFSANFSTSCTIPCLPPSSCGPLPSPSSSS
APYYKIRLSLGLDTTLADAAPFPSFLSSLCAPPHWRSATLRSLLSHTSGI
ADYWTDPSFLIAFSENSHRTWNADEILKDYAAKMPPLPTSFSPSPKRCSF
TSCCSPSSSSSSSSSSSPSSSFPYAYSDTNYVLIGQLIEAWTGQKLHTVM
NETLFLPLGLADTYFPYLQSSPSFSPFRARGAGKNARGKSGGGSSTKRRP
GNERIDKEAKKERLPKKDEREAPSPSEGGNEVGKKNGARLPTAGPILSHR
YESEEDLVNVPRQSADWAGGGLVSSAQDLTLFARKGLLGSRSGGREGVSL
ADIMMAESVLTGMNGVWSSLGLFVMDLEEEEDGVDGRIWGHDGWGHSFMF
VYEPPQSDQQHAESDILILTGTVNQQDERADPWQAIMEGLRCMLKAGNSF
DKNEKF

mRNA from alignment at CM002463.1:191398..193655+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4290 ID=rna4290|Name=rna4290|organism=Nannochloropsis gaditana|type=mRNA|length=2258bp|location=Sequence derived from alignment at CM002463.1:191398..193655+ (Nannochloropsis gaditana)
GAACGTGTGAGATTGAAAACATTCGATGCTCCACTAGACTCACATACACG
TATATGCAAATTCCAGGAGCTTTGTATGTCTTACGTGCGCGCCCTTCAGA
ATGCTCCGTGGCAccgaggcagcagcagcactagCTGGAGAGAGTTTACC
CCCCaactcctctctcccagtTCCCCCTGTAGTAGCTCACAAGTGTTCCA
ACACGATAAGAGGGGCATTCAACGATATAATCCTGAAAAACAAAGGGTTT
GGTGGAGGAATATTGAGGATTGAATCTCTTGCGCGCGGCCTGTTATGGGA
AGGTAGTTGGGGTAAGGTGAGTACGGGTCTGCAGTATCAAGTGTCTTCTT
CCGAGCCACAGCATTTTCTTGGCTCCTACTCTGTACAACTCACACTCAGA
ATCCGTATACACTGCCCCCATCTTCTCCCTTATCGCCTGCTTTCAAGCCA
CAAAGTATTGAAAGACGGGAAGACCCTCAAATCACGAGGCAACGAATGCT
TCGCTCTTTTTTCCACTTCCAGAAATCGCGCTCCCAGCGTCGTCTTAAAT
AGTCATATTTAGCCTTTTGCTCCACTCCACCTTTGTCACTCACATGCAGG
TGCAACACTcaagcaaagaggaggatatgACGCCCTCAACCCGGTTTGAG
ATCGCTAGCATTACCAAGACCTTTGTTGCTTCTACTCTCATGCTCCTCCT
GGCCCGCCACTCACTGTCTGACTTTAGGACTAATTCCAATCTTGATTTCT
CCGCCAATTTTTCAACCTCCTGTACAatcccctgccttcctccttcatcc
tgcGGCCCATtgccctcaccttcctcatcctcggcTCCTTATTACAAAAT
TCGCCTTTCCTTGGGTCTCGACACCACCCTCGCCGACgccgctcccttcc
cgtcttttctttcctccctctgtgccCCTCCCCACTGGCGCTCAGCCACT
CTCCGGAgccttctctcccacacAAGCGGCATCGCCGACTACTGGAccga
tccttccttcctcatcgctTTCAGCGAGAATTCTCACCGAACGTGGAATG
CGGATGAAATTTTAAAAGATTATGCAGCCAAAATGCCGCCTCTGCCtact
tctttttccccttcccccaagAGATGCTCCTTTACCTCCTGCTgttcccc
ctcgtcctcctcctcctcttcttcttcctcctccccttcctcttctttcc
cctacGCCTACAGCGACACAAACTACGTCCTAATCGGCCAGCTTATTGAA
GCATGGACAGGCCAAAAGCTGCACACAGTCATGAACGAGACTCTGTTCCT
GCCGCTTGGCTTGGCGGACACGTACTTCCCCTACCTGcaatcttctccct
ctttctcaccTTTCCGTGcacgaggggcgggaaaaaaTGCAAGGGGGAAA
TCTGGAGGAGGCTCCTCTACCAAAAGAAGACCAGGTAATGAGAGGATTGA
TAAAGAAGCCAAGAAGGAGCGGTTGCCGAAGAAGGACGAGCGAGAGGCGC
CCTCGCCGTCCGAAGGAGGCAACGAGGTGGGTAAGAAAAATGGAGCAAGG
CTTCCAACGGCCGGGCCAATACTTTCCCATCGATatgaaagcgaggaaga
TCTGGTCAACGTGCCTCGTCAATCGGCAGATtgggccggagggggccTTG
TGTCGTCCGCCCAGGATCTTACCCTGTTTGCGAGAAAGGGGCTGCTGGGA
AGTaggagtggaggacgcgaaggagtgAGTCTGGCAGATATCATGATGGC
CGAATCGGTATTGACAGGAATGAATGGAGTATGGTCGAGCTTGGGCTTGT
tcgtgatggatttggaggaggaggaggatggggtggaCGGCAGAATATGG
GGACACGACGGATGGGGCCATTCCTTCATGTTTGTATATGAACCGCCTCA
ATCGGACCAGCAGCATGCAGAAAGTGATATTCTCATACTAACAGGGACCG
TAAACCAGCAAGATGAGCGGGCTGATCCCTGGCAGGCGATAATGGAGGGA
CTAAGATGTATGCTTAAAGCAGGTAACTCCTTCGACAAAAACGAAAAATt
ttgaggaggagagccaaCGTGGAAAAAGGCAACTTCGGCACGTTTTTTCA
ATTCTTTTTCTGTATTTAAAGCTTCATTATCGTTATACATTACATACATT
ACATGCATGGCAGGAGGCATCTGCAAGCTTTACGATGCCTTCGAGGTTTT
TAGCATATGTCATGAGAAGGAGCATACAATCCACAAAGAATATCGTTCTA
ACAACCAA

Coding sequence (CDS) from alignment at CM002463.1:191398..193655+

>rna4290 ID=rna4290|Name=rna4290|organism=Nannochloropsis gaditana|type=CDS|length=3342bp|location=Sequence derived from alignment at CM002463.1:191398..193655+ (Nannochloropsis gaditana)
ATGCTCCGTGGCAccgaggcagcagcagcactagCTGGAGAGAGTTTACC
CCCCaactcctctctcccagtTCCCCCTGTAGTAGCTCACAAGTGTTCCA
ACACGATAAGAGGGGCATTCAACGATATAATCCTGAAAAACAAAGGGTTT
GGTGGAGGAATATTGAGGATTGAATCTCTTGCGCGCGGCCTGTTATGGGA
AGGTAGTTGGGGTAAGGTGCAACACTcaagcaaagaggaggatatgACGC
CCTCAACCCGGTTTGAGATCGCTAGCATTACCAAGACCTTTGTTGCTTCT
ACTCTCATGCTCCTCCTGGCCCGCCACTCACTGTCTGACTTTAGGACTAA
TTCCAATCTTGATTTCTCCGCCAATTTTTCAACCTCCTGTACAatcccct
gccttcctccttcatcctgcGGCCCATtgccctcaccttcctcatcctcg
gcTCCTTATTACAAAATTCGCCTTTCCTTGGGTCTCGACACCACCCTCGC
CGACgccgctcccttcccgtcttttctttcctccctctgtgccCCTCCCC
ACTGGCGCTCAGCCACTCTCCGGAgccttctctcccacacAAGCGGCATC
GCCGACTACTGGAccgatccttccttcctcatcgctTTCAGCGAGAATTC
TCACCGAACGTGGAATGCGGATGAAATTTTAAAAGATTATGCAGCCAAAA
TGCCGCCTCTGCCtacttctttttccccttcccccaagAGATGCTCCTTT
ACCTCCTGCTgttccccctcgtcctcctcctcctcttcttcttcctcctc
cccttcctcttctttcccctacGCCTACAGCGACACAAACTACGTCCTAA
TCGGCCAGCTTATTGAAGCATGGACAGGCCAAAAGCTGCACACAGTCATG
AACGAGACTCTGTTCCTGCCGCTTGGCTTGGCGGACACGTACTTCCCCTA
CCTGcaatcttctccctctttctcaccTTTCCGTGcacgaggggcgggaa
aaaaTGCAAGGGGGAAATCTGGAGGAGGCTCCTCTACCAAAAGAAGACCA
GGTAATGAGAGGATTGATAAAGAAGCCAAGAAGGAGCGGTTGCCGAAGAA
GGACGAGCGAGAGGCGCCCTCGCCGTCCGAAGGAGGCAACGAGGTGGGTA
AGAAAAATGGAGCAAGGCTTCCAACGGCCGGGCCAATACTTTCCCATCGA
TatgaaagcgaggaagaTCTGGTCAACGTGCCTCGTCAATCGGCAGATtg
ggccggagggggccTTGTGTCGTCCGCCCAGGATCTTACCCTGTTTGCGA
GAAAGGGGCTGCTGGGAAGTaggagtggaggacgcgaaggagtgAGTCTG
GCAGATATCATGATGGCCGAATCGGTATTGACAGGAATGAATGGAGTATG
GTCGAGCTTGGGCTTGTtcgtgatggatttggaggaggaggaggatgggg
tggaCGGCAGAATATGGGGACACGACGGATGGGGCCATTCCTTCATGTTT
GTATATGAACCGCCTCAATCGGACCAGCAGCATGCAGAAAGTGATATTCT
CATACTAACAGGGACCGTAAACCAGCAAGATGAGCGGGCTGATCCCTGGC
AGGCGATAATGGAGGGACTAAGATGTATGCTTAAAGCAGGTAACTCCTTC
GACAAAAACGAAAAATtttgaATGCTCCGTGGCAccgaggcagcagcagc
actagCTGGAGAGAGTTTACCCCCCaactcctctctcccagtTCCCCCTG
TAGTAGCTCACAAGTGTTCCAACACGATAAGAGGGGCATTCAACGATATA
ATCCTGAAAAACAAAGGGTTTGGTGGAGGAATATTGAGGATTGAATCTCT
TGCGCGCGGCCTGTTATGGGAAGGTAGTTGGGGTAAGGTGCAACACTcaa
gcaaagaggaggatatgACGCCCTCAACCCGGTTTGAGATCGCTAGCATT
ACCAAGACCTTTGTTGCTTCTACTCTCATGCTCCTCCTGGCCCGCCACTC
ACTGTCTGACTTTAGGACTAATTCCAATCTTGATTTCTCCGCCAATTTTT
CAACCTCCTGTACAatcccctgccttcctccttcatcctgcGGCCCATtg
ccctcaccttcctcatcctcggcTCCTTATTACAAAATTCGCCTTTCCTT
GGGTCTCGACACCACCCTCGCCGACgccgctcccttcccgtcttttcttt
cctccctctgtgccCCTCCCCACTGGCGCTCAGCCACTCTCCGGAgcctt
ctctcccacacAAGCGGCATCGCCGACTACTGGAccgatccttccttcct
catcgctTTCAGCGAGAATTCTCACCGAACGTGGAATGCGGATGAAATTT
TAAAAGATTATGCAGCCAAAATGCCGCCTCTGCCtacttctttttcccct
tcccccaagAGATGCTCCTTTACCTCCTGCTgttccccctcgtcctcctc
ctcctcttcttcttcctcctccccttcctcttctttcccctacGCCTACA
GCGACACAAACTACGTCCTAATCGGCCAGCTTATTGAAGCATGGACAGGC
CAAAAGCTGCACACAGTCATGAACGAGACTCTGTTCCTGCCGCTTGGCTT
GGCGGACACGTACTTCCCCTACCTGcaatcttctccctctttctcaccTT
TCCGTGcacgaggggcgggaaaaaaTGCAAGGGGGAAATCTGGAGGAGGC
TCCTCTACCAAAAGAAGACCAGGTAATGAGAGGATTGATAAAGAAGCCAA
GAAGGAGCGGTTGCCGAAGAAGGACGAGCGAGAGGCGCCCTCGCCGTCCG
AAGGAGGCAACGAGGTGGGTAAGAAAAATGGAGCAAGGCTTCCAACGGCC
GGGCCAATACTTTCCCATCGATatgaaagcgaggaagaTCTGGTCAACGT
GCCTCGTCAATCGGCAGATtgggccggagggggccTTGTGTCGTCCGCCC
AGGATCTTACCCTGTTTGCGAGAAAGGGGCTGCTGGGAAGTaggagtgga
ggacgcgaaggagtgAGTCTGGCAGATATCATGATGGCCGAATCGGTATT
GACAGGAATGAATGGAGTATGGTCGAGCTTGGGCTTGTtcgtgatggatt
tggaggaggaggaggatggggtggaCGGCAGAATATGGGGACACGACGGA
TGGGGCCATTCCTTCATGTTTGTATATGAACCGCCTCAATCGGACCAGCA
GCATGCAGAAAGTGATATTCTCATACTAACAGGGACCGTAAACCAGCAAG
ATGAGCGGGCTGATCCCTGGCAGGCGATAATGGAGGGACTAAGATGTATG
CTTAAAGCAGGTAACTCCTTCGACAAAAACGAAAAATtttga

Synonyms

Publications