rna4289, rna4289 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4289
Unique Name	rna4289
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1132
Alignment location	CM002463.1:188794..191285 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100715g3.2646.mrna
Orig protein id	gnl\|cribi\|Naga_100715g3.2646
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:188794..191285 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100715g3	gene4134	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26395.1	cds4279	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4289	rna4289-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:188794..191285-
coding sequence from alignment at CM002463.1:188794..191285-

mRNA sequence

>rna4289 ID=rna4289|Name=rna4289|organism=Nannochloropsis gaditana|type=mRNA|length=1132bp
CCTCCCGCCCTGTTTCCCACCCTCCTTCCCGTCCTCCAGGTGGTGAACAG
CCTTGCCAACGCTGGGCTGGCCTACTTGTCGGGGAACAAAGCAGTGGCGC
TCATGTCGGGTTTGGAGGCCGTGGGAACCATGCTCTTTGGTCCGAAAACG
AACCACGATGCCCGGCGTCGGACCGAAGAAAACAACCAAAGCCCCGCGGA
CGTGATCCAATTTGGAGGTTGTCGGGACGACCAGACGAGCGCCGACACCC
GGATTGACGGGCAGGCCACGGGTGCCTTGTCTTGGGCCTTGATTCGAGTC
CTCAGCCAGGGCCCCAACCAAGACTATGCCCAGGTATTGAAGAACATGCG
GCAGCTGCTGCGGGGCAAGTACACGCAAATCCCGCAGATTTCTTCCTCCC
ACAAGATCGATCTGTTCTCCCCTTTCAAGATGTAGGCGAGGTGCGGGCGG
TGGTATTCCGTGCGGGGGGGTCGGGCAGGGGGGCGCGAGCTTGTCCAGAA
GGCCTCTGGGCTGGGGGTGTTGATCTTGCATGTCGGCTTCAAGCGGGACG
CATGAAAGATAGCTCGGTACATAGTTTCGGGGAGATTAGAGGCCACATGG
TCATGGTGAGGAACAGGAGAACATAATCCGGGGTCGTCTGATTGTGTTTG
GTTTTGCATCGGGTGGGGGGGAGGGGGGGAAGGGGGCCACATTGTGAGAA
TAAAGGGACATCTATGCTGCTACGCGACTCATGTTTAGAGGGCAAGGAAA
GAGTGGTGGAGATGTAGAATGTGCCTGCGGCTTTTGAAGGCGGTCAGGTA
GGGTACTGTGCGAAACGTGTCGCGGCGGTGCCTTCAGTGGCCAGGGGCCT
GAAGAAAGTTACAGGATATGCTGGAGCAGGGAGCTGAATCACATCAGAGT
TTGATCTTGTTATCTTTCCGTTCAAATGGCGTTGGAAGGAATCGAGACGA
GAGCTGGGTATGGATAAGATTGTTTGGGTATAGATAAGGATTTTCCGGGT
ATAGATGAGATTGTTTATAAGGCGACGGCGGTGGTCCGAAAGGGTGAAAG
AAGCCTTGAGAGAACAACAACTTGAGTACAAATCGGGCATTATTGAAATA
CGAAAGAATCATGCACCTGGGATGAAAAACAC

protein sequence of rna4289

>rna4289-protein ID=rna4289-protein|Name=rna4289|organism=Nannochloropsis gaditana|type=polypeptide|length=245bp
MHQSSVQKEAERPATLRPEPAIFCIKTFMPHPGQEKELETRLQKHWDALH
AAGLTVPNQEPLFLRSRAGRVLEVFEWKDAEAMEEAHRRGELQDTWKKLL
EVGTMVPLASLGECSEPYAHFHVVQPGTHEVKDKMVKIVAVKPHTGKLND
LIAKLKKHDVALRKAGYTTGRPAMHMRGEKEGHVVEVAEWASVQKVKEAQ
KSDDVHGLWNEFNVSVEHNCPLTCLPEAKDRYSLFPAITLHTMSE

mRNA from alignment at CM002463.1:188794..191285-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4289 ID=rna4289|Name=rna4289|organism=Nannochloropsis gaditana|type=mRNA|length=2492bp|location=Sequence derived from alignment at CM002463.1:188794..191285- (Nannochloropsis gaditana)
CATGCCCGCCTCAAGAAAGTGGTGCAATCCCCTTTGTTTTCAGGCTTATT
CGATCATGTTATCAGAGCAAATTTGCCATGCTTGTGCCTGCCGGCGAGCT
CCTCGTCAATTTCTGTGCTATGGAAGTTGAACCTCCCCGCGTTTTGTGCA
ACCCCGAAAGAACACAAGGCCCTTTCCATCGCACCCATTTCCGGGAACAT
TTTTCCTCAATCATATCCTTGGGGATCTTTTGCCATTTATTCTAGCCACT
AAATCTGCCTTGGAAGCATAGGATGCATCAATCGTCAGTGCAAAAAGAGG
CAGAACGACCCGCCACCCTCAGGCCGGAGCCTGCGATATTCTGCATCAAG
ACGTTCATGCCACATCCAGGTCAGGAAAAAGAGCTGGAAACCCGCCTTCA
AAAGCATTGGGATGCATTGCATGCTGCAGGATTAACAGTACCCAATCAAG
AGCCTTTGTTTCTTCGCAGCCGCGCCGGCCGTGTGTTGGAAGTCTTTGAG
TGGAAAGATGCAGAGGCCATGGAGGAAGCACACCGCCGAGGTGAGCTTCA
GGATACCTGGAAAAAGCTTTTGGAAGTGGGGACCATGGTTCCTCTGGCCT
CTTTGGGGGAGTGTAGCGAGCCGTACGCACACTTTCATGTCGTGCAGCCC
GGCACTCACGAGGTGAAGGACAAAATGGTCAAGATCGTGGCTGTGAAGCC
TCACACTGGAAAATTAAATGACCTGATTGCCAAACTCAAGAAACACGACG
TAGCTTTACGCAAGGCAGGGTACACAACGGGACGGCCGGCCATGCACATG
CGTGGGGAGAAGGAGGGGCACGTGGTGGAGGTTGCCGAATGGGCCTCTGT
GCAGAAAGTGAAAGAGGCGCAGAAAAGCGACGATGTCCACGGATTATGGA
ACGAATTCAACGTGTCGGTAGAGCATAACTGCCCGCTGACGTGCTTGCCG
GAGGCGAAGGATCGGTATTCTCTCTTCCCCGCCATCACCTTGCACACCAT
GAGCGAGTGAGAGGGTGGTGGCCAATTAGCACAAATGTTGCGGTTGACTG
TCGTGTCGTGGGAGGATGCGCGACAGAATCTAAGCTGACGCAGTAATTTC
TGTTTAAGAGGACAGCAATCGCGGTGACATAAGACACAAGGGTGGAGGGG
TAAGCGAGGAAAATGTCGAACTAGTATGCGTAGGGGCCTACCCCGATGTA
GCAACTTAGCACCCTTCACAGCAGGAAGAGGTGAGATCGCGAAGACTTTC
GCCTCGCATCTGATAGTGCGGGATAAGCAGGGAGGTTTCCGACAAAGGCG
AGGCATACAAAAATGGCTGCAGACACATTTACCGCATAACGCACCAGACT
TAGGAGCATGGCGCCGTGTTTTTCATCCCAGGTGCATGATTCTTTCGTAT
TTCAATAATGCCCGATTTGTACTCAAGTTGTTGTTCTCTCAAGGCTTCTT
TCACCCTTTCGGACCACCGCCGTCGCCTTATAAACAATCTCATCTATACC
CGGAAAATCCTTATCTATACCCAAACAATCTTATCCATACCCAGCTCTCG
TCTCGATTCCTTCCAACGCCATTTGAACGGAAAGATAACAAGATCAAACT
CTGATGTGATTCAGCTCCCTGCTCCAGCATATCCTGTAACTTTCTTCAGG
CCCCTGGCCACTGAAGGCACCGCCGCGACACGTTTCGCACAGTACCCTAC
CTGACCGCCTTCAAAAGCCGCAGGCACATTCTACATCTCCACCACTCTTT
CCTTGCCCTCTAAACATGAGTCGCGTAGCAGCATAGATGTCCCTTTATTC
TCACAATGTGGCCCCCTTCCCCCCCTCCCCCCCACCCGATGCAAAACCAA
ACACAATCAGACGACCCCGGATTATGTTCTCCTGTTCCTCACCATGACCA
TGTGGCCTCTAATCTCCCCGAAACTATGTACCGAGCTATCTTTCATGCGT
CCCGCTTGAAGCCGACATGCAAGATCAACACCCCCAGCCCAGAGGCCTTC
TGGACAAGCTCGCGCCCCCCTGCCCGACCCCCCCGCACGGAATACCACCG
CCCGCACCTCGCCTACATCTTGAAAGGGGAGAACAGATCGATCTTGTGGG
AGGAAGAAATCTGCGGGATTTGCGTGTACTTGCCCCGCAGCAGCTGCCGC
ATGTTCTTCAATACCTGGGCATAGTCTTGGTTGGGGCCCTGGCTGAGGAC
TCGAATCAAGGCCCAAGACAAGGCACCCGTGGCCTGCCCGTCAATCCGGG
TGTCGGCGCTCGTCTGGTCGTCCCGACAACCTCCAAATTGGATCACGTCC
GCGGGGCTTTGGTTGTTTTCTTCGGTCCGACGCCGGGCATCGTGGTTCGT
TTTCGGACCAAAGAGCATGGTTCCCACGGCCTCCAAACCCGACATGAGCG
CCACTGCTTTGTTCCCCGACAAGTAGGCCAGCCCAGCGTTGGCAAGGCTG
TTCACCACCTGGAGGACGGGAAGGAGGGTGGGAAACAGGGCG

Coding sequence (CDS) from alignment at CM002463.1:188794..191285-

>rna4289 ID=rna4289|Name=rna4289|organism=Nannochloropsis gaditana|type=CDS|length=738bp|location=Sequence derived from alignment at CM002463.1:188794..191285- (Nannochloropsis gaditana)
ATGCATCAATCGTCAGTGCAAAAAGAGGCAGAACGACCCGCCACCCTCAG
GCCGGAGCCTGCGATATTCTGCATCAAGACGTTCATGCCACATCCAGGTC
AGGAAAAAGAGCTGGAAACCCGCCTTCAAAAGCATTGGGATGCATTGCAT
GCTGCAGGATTAACAGTACCCAATCAAGAGCCTTTGTTTCTTCGCAGCCG
CGCCGGCCGTGTGTTGGAAGTCTTTGAGTGGAAAGATGCAGAGGCCATGG
AGGAAGCACACCGCCGAGGTGAGCTTCAGGATACCTGGAAAAAGCTTTTG
GAAGTGGGGACCATGGTTCCTCTGGCCTCTTTGGGGGAGTGTAGCGAGCC
GTACGCACACTTTCATGTCGTGCAGCCCGGCACTCACGAGGTGAAGGACA
AAATGGTCAAGATCGTGGCTGTGAAGCCTCACACTGGAAAATTAAATGAC
CTGATTGCCAAACTCAAGAAACACGACGTAGCTTTACGCAAGGCAGGGTA
CACAACGGGACGGCCGGCCATGCACATGCGTGGGGAGAAGGAGGGGCACG
TGGTGGAGGTTGCCGAATGGGCCTCTGTGCAGAAAGTGAAAGAGGCGCAG
AAAAGCGACGATGTCCACGGATTATGGAACGAATTCAACGTGTCGGTAGA
GCATAACTGCCCGCTGACGTGCTTGCCGGAGGCGAAGGATCGGTATTCTC
TCTTCCCCGCCATCACCTTGCACACCATGAGCGAGTGA

Synonyms

Publications