rna4288, rna4288 (mRNA) Nannochloropsis gaditana

Overview
Namerna4288
Unique Namerna4288
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1012
Alignment locationCM002463.1:188789..189920 +

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Properties
Property NameValue
Productputative caspase
Orig transcript idgnl|cribi|Naga_100715g5.2643.mrna
Orig protein idgnl|cribi|Naga_100715g5.2643
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:188789..189920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100715g5gene4133Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4288rna4288-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26392.1cds4278Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4288 ID=rna4288|Name=rna4288|organism=Nannochloropsis gaditana|type=mRNA|length=1012bp
TCTGCACCCTTCTCCGCAGCGCGGGCTCCATTGCAAAGATCTTGAAGGCA
GGCTAGACGACAACCTCCGACTGGCCAAGCGCCATGGTGTATCCGGGAGC
CCGCTTCCGTAAACAGCTACAGGAGCAACAACAGCAAGGGCCGTTGTCGG
TGTCGATTCCTGTAGCTTCAGTCCAGCAGCCTTCCCAACCACCTGCGCCT
TCCTTGCCACAACATGGTTCTCACTACCCAGCAGCACCTCGCCCCCCCCC
TTCCTACGCCCCAGTCGTCGCCGCCCCATCTGCTTTTCAAAACTACCAGT
CCTCAAGCCCACGCCCACAGCCACAACAACCTATTATAGCCACTGCCTAT
GCTGTGCCTGTGCAAAATGGCGCTTTTTCCGGACCAGGGGCCTATGGACA
CGGCCCTCCCATCCCCAGTGCCCCCCCCCTTCCCCCCCCTTCCGCCCCAC
TTCCTCCTCCATGGCCGTCCACCCAAGCACCCACCAATCTTTACACTCCC
GTCGGGGGTTTCGTGGCGAACAATGCGGTGGCCACGCCCCCTCCTTCCCA
ACAAGGCCGCCCTTCGTCCTCCCTCTCCTCCTTCGCCCCTCCATCCGGAT
ACCAACCTCCCCCCCGTCCTGCACCGTCCTTCCCTCCCTCCTCATCGGCC
GCATATCGTCCACCCCACCGCCCTCCCTCCTCCTCCCCTTCGCCCCTCCC
CGAAGGCTCTACGTACCAACGTCCCAACGACCTGCACGGTGCTTTGCCTT
TTTCCTCCCCTTGTAACGGTCGGAGAAAGGCACTTTTCGTCGGAATTACC
TACGCGGGGACCCGGGCCGAGCTCAAAGGCTGCGTGAACGACGTGAAGAA
CCTGCATGCTTTCATCCATCGTACCTACGGGTTCCAGCCTCAGGAGATGC
GGGTCTTGACGGACGATCCTGGCTTCTCGGAGGGGACGCCCACGCGCCAG
AATATCGTCCAAGGCATGCGCTGGCTCGTGGGGGGGGGCTCGGCATGGGG
ACAGGTGAGGGA
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protein sequence of rna4288

>rna4288-protein ID=rna4288-protein|Name=rna4288|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
PPALFPTLLPVLQVVNSLANAGLAYLSGNKAVALMSGLEAVGTMLFGPKT
NHDARRRTEENNQSPADVIQFGGCRDDQTSADTRIDGQATGALSWALIRV
LSQGPNQDYAQVLKNMRQLLRGKYTQIPQISSSHKIDLFSPFKM
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mRNA from alignment at CM002463.1:188789..189920+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4288 ID=rna4288|Name=rna4288|organism=Nannochloropsis gaditana|type=mRNA|length=1132bp|location=Sequence derived from alignment at CM002463.1:188789..189920+ (Nannochloropsis gaditana)
cctcccgccctgtttcccaccctccttcccgtcctccaggtGGTGAACAG
CCTTGCCAACGCTGGGCTGGCCTACTTGTCGGGGAACAAAGCAGTGGCGC
TCATGTCGGGTTTGGAGGCCGTGGGAACCATGCTCTTTGGTCCGAAAACG
AACCACGATGCCCGGCGTCGGACCGAAGAAAACAACCAAAGCCCCGCGGA
CGTGATCCAATTTGGAGGTTGTCGGGACGACCAGACGAGCGCCGACACCC
GGATTGACGGGCAGGCCACGGGTGCCTTGTCTTGGGCCTTGATTCGAGTC
CTCAGCCAGGGCCCCAACCAAGACTATGCCCAGGTATTGAAGAACATGCG
GCAGCTGCTGCGGGGCAAGTACACGCAAATCCCGCagatttcttcctccc
acaagATCGATCTGTTCTCCCCTTTCAAGATGTAGGCGAGGTGCGGGCGG
TGGTATTCCGTGCGGGGGGGTCGGGCAGGGGGGCGCGAGCTTGTCCAGAA
GGCCTCTGGGCTGGGGGTGTTGATCTTGCATGTCGGCTTCAAGCGGGACG
CATGAAAGATAGCTCGGTACATAGTTTCGGGGAGATTAGAGGCCACATGG
TCATGGTGAGGAACAGGAGAACATAATCCGGGGTCGTCTGATTGTGTTTG
GTTTTGCatcgggtgggggggagggggggaagggggccacATTGTGAGAA
TAAAGGGACATCTATGCTGCTACGCGACTCATGTTtagagggcaaggaaa
gagTGGTGGAGATGTAGAATGTGCCTGCGGCTTTTGAAGGCGGTCAGGTA
GGGTACTGTGCGAAACGTGTCGCGGCGGTGCCTTCAGTGGCCAGGGGCCT
GAAGAAAGTTACAGGATATGCTGGAGCAGGGAGCTGAATCACATCAGAGT
TTGATCTTGTTATCTTTCCGTTCAAATGGCGTTGGAAGGAATCGAGACGA
GAGCTGGGTATGGATAAGATTGTTTGGGTATAGATAAGGATTTTCCGGGT
ATAGATGAGATTGTTTATAAGGCGACGGCGGTGGTCCGAAAGGGTGAAAG
AAGCCTTGAGAGAACAACAACTTGAGTACAAATCGGGCATTATTGAAATA
CGAAAGAATCATGCACCTGGGATGAAAAACAC
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Coding sequence (CDS) from alignment at CM002463.1:188789..189920+

>rna4288 ID=rna4288|Name=rna4288|organism=Nannochloropsis gaditana|type=CDS|length=435bp|location=Sequence derived from alignment at CM002463.1:188789..189920+ (Nannochloropsis gaditana)
cctcccgccctgtttcccaccctccttcccgtcctccaggtGGTGAACAG
CCTTGCCAACGCTGGGCTGGCCTACTTGTCGGGGAACAAAGCAGTGGCGC
TCATGTCGGGTTTGGAGGCCGTGGGAACCATGCTCTTTGGTCCGAAAACG
AACCACGATGCCCGGCGTCGGACCGAAGAAAACAACCAAAGCCCCGCGGA
CGTGATCCAATTTGGAGGTTGTCGGGACGACCAGACGAGCGCCGACACCC
GGATTGACGGGCAGGCCACGGGTGCCTTGTCTTGGGCCTTGATTCGAGTC
CTCAGCCAGGGCCCCAACCAAGACTATGCCCAGGTATTGAAGAACATGCG
GCAGCTGCTGCGGGGCAAGTACACGCAAATCCCGCagatttcttcctccc
acaagATCGATCTGTTCTCCCCTTTCAAGATGTAG
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Synonyms
Publications