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Properties
| Property Name | Value |
|---|
| Product | calcium-dependent metacaspase cdp ii |
| Orig transcript id | gnl|cribi|Naga_100365g1.932.mrna |
| Orig protein id | gnl|cribi|Naga_100365g1.932 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:187294..188305 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4287 ID=rna4287|Name=rna4287|organism=Nannochloropsis gaditana|type=mRNA|length=2171bp
CCCCCCGCGTATGCCGTAGCCGCGGTGCCATTGAGACGCAGCCTGGTTGA
GATGAGTGGGAAATGACGGCATGAATTGTGCGTTTCAAGGCAATTTGAAA
TGCGGGAGCACCGGGCTCAAGAAGGTTGATTGTGTGCACGCTTTCAATTT
CGATGTCCCAAGTGCTATCGAGAGACTTGTGAATGTGTGGGCAAACCGAG
CTGTTTTTAAGGTCCGAAAGAGTCGCAGAAACTCGCTTGATGGACCCACA
GTACATTGAATGTTTCGTGGCTCGATGCGCACACACGTCTTCACCCTTTC
CCTTTCTGAAAAACCTCCCTCCCTCCGACAAAAGTCATGGTATGCACATC
AACCATTGTCCCCCCGAACCCCACAGCGATGCCATCGACATGGCCAGCAA
GTCGCATCAGGAATAGCCGCGTCCGTCTTCCGCTCCTTGCTTCCTGTGTG
GGTGTACTGGCGTTGGCCGCTTCGCGAGCTGCTTATGCCTACCTCCCGTC
CCACTCGTTTTTCTTCTCCTCCTCCTCCTCCTCCCTTGTTGCCTCCTTTT
CTTCCTCCCCTCGAATTAAGCGTCGGCATCCCGCCGCTCTTCAAATGCGC
ATGAAGCCGTCGGGCGAGGAGCGGGAACGTGGCTTGGCAGAGAAGGACTT
GCGGGAGAAGCACAGTCAGGTCCTCCTCTCTCAACGCATCCAGCACATAC
GCCGTCTCCGAGCCTCCCGCCGGGAAGACGTGATGGCTACGGAGTGGTAC
TGTCCGACAAAGCCCAATCCGGACTGGCGGTATGCGGCGGAGGGAGAAAG
ACCACGGGGGGAGGGGCGGGAGGCAGCGGCAATGGATGAATTGACTGCCA
TGTTGGACTACCACGCGGAACGGGGGGCGGGGGGAAGCGTCGTGAACGTG
TACGCCAAGGAGGAGGAAGCCGCGGAAGCTTTTGCGCAAAAATTGGGTGG
CAGTTTGGCCGCATTTGACCGCGTGACCCAGGCTTCCGGAGTGCCCGGCG
GGGTTCCTCCTCCTGTGCCCTTGAGCTCCGTCGCGAGCACCCCGGCAGTT
GTAGGCAGGGCCCTCAAACGACACGACTACGCGCCCTTGGCCGTGTGGAG
GTGTCTGAGACGGTGGGCAGGGAACGCGGAGGGGGAACCCTGCACCTACA
ACGGGATCAGGGGCACTGGCAAGTACGTGGTAATTCTCGTGGATCCGAAC
CTTGCGGCCACCACGCTGGTGGAAGGTCTAAACAGGATGCGGATCATCCC
TTCGTCCTTGGCCGCAGTAGTGGGGGTCACTCCTCTTTCATGTCCCGAGC
TCGCGCGATTGGCGAAGAAAGCCGGGCTGACAGCGACCGGCGCCAGCACC
TCCACGTACCTTTTGAGCGACACTTCCTATAGCTGGATGGACGCGTACGG
CCTTCCTCGCCTCTCCCTCCGGCCCTGGCTCTTGATTTTAGACGGCAGCA
CAGGGATGGTTTTGAGCGTGAAGCGAGACCCAACGCCAGGAACCTTGAAC
GATGCCGTCATGGAAGTCGTGGGGGACTGGCGGGGTAAAAGGTGACCCAA
TGGTGCCCAGAAGGTGGATGACAGAGTCGTAAAAAGAAAATGCTTGTACA
TGATCATCCCAAAGTCGGTGGGGCCTTCACAAGTATTATTTTGCGGGTGA
TTGGATAGTCCCCTCGAGTGTGCGGGCCGCCACTCGTCCAGCATGTCCTT
CGGTTCGGTGCATGCTTTGTTTTATACTGGGAGGTGAACAAAATTTTATC
GTCGCAACGACTCGTACTCTATGAGGCCCTAGCTTAGCTTACCGGAAGAT
CGGAACACCAACCTCCTGCATAACGCGATTCCCAAACACCCCTACAATAT
TATCGTAGGGGAGACATGAAGTTTAACGTATCTGACATGTCTTTTGCATA
GTAATTTTAAAGATTTTTATATCGTGGGATGTCTTGGATCCAACTTACGG
GCAACTTTGCCCTCTGTCCACCTGAGCGAACATGGAACGGATGACGTCCG
TGTTGTACTTGTCATACCAGTAATTTTAGGGCTTCACAAAGAACACGCTC
ACAGTGGAGAACGGAAGATGTTCGTGATTGTGCTAGCATCTTACATTCGT
GCTACTTTTTCGAGGTAATTGTAAAGTCTTGATATCTTTAACACAGTTTA
CTATGTTTTTTTCCTGCGGTG back to topprotein sequence of rna4287 >rna4287-protein ID=rna4287-protein|Name=rna4287|organism=Nannochloropsis gaditana|type=polypeptide|length=309bp
MVYPGARFRKQLQEQQQQGPLSVSIPVASVQQPSQPPAPSLPQHGSHYPA
APRPPPSYAPVVAAPSAFQNYQSSSPRPQPQQPIIATAYAVPVQNGAFSG
PGAYGHGPPIPSAPPLPPPSAPLPPPWPSTQAPTNLYTPVGGFVANNAVA
TPPPSQQGRPSSSLSSFAPPSGYQPPPRPAPSFPPSSSAAYRPPHRPPSS
SPSPLPEGSTYQRPNDLHGALPFSSPCNGRRKALFVGITYAGTRAELKGC
VNDVKNLHAFIHRTYGFQPQEMRVLTDDPGFSEGTPTRQNIVQGMRWLVG
GGSAWGQVR back to topmRNA from alignment at CM002463.1:187294..188305+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4287 ID=rna4287|Name=rna4287|organism=Nannochloropsis gaditana|type=mRNA|length=1012bp|location=Sequence derived from alignment at CM002463.1:187294..188305+ (Nannochloropsis gaditana)
TCTGCACCCTTCTCCGCAGCGCGGGCTCCATTGCAAAGATCTTGAAGGCA
GGCTAGACGACAACCTCCGACTGGCCAAGCGCCATGGTGTATCCGGGAGC
CCGCTTCCGTAAACAGCTACAggagcaacaacagcaaggGCCGTTGTCGG
TGTCGATTCCTGTAGCTTCAGTCCAGCAGCCTTCCCAACCACCTGCGCCT
TCCTTGCCACAACATGGTTCTCACTACCCAGCAgcacctcgccccccccc
ttcctacgcCCCAGTCGTCGCCGCCCCATCTGCTTTTCAAAACTACCAGT
CCTCAAGCCCACGCCCACAGCCACAACAACCTATTATAGCCACTGCCTAT
GCTGTGCCTGTGCAAAATGGCGCTTTTTCCGGACCAGGGGCCTATGGACA
Cggccctcccatccccagtgcccccccccttccccccccttccgccccac
ttcctcctccatggccgtcCACCCAAGCACCCACCAATCTTTACACTCCC
GTCGGGGGTTTCGTGGCGAACAATGCGGTGGccacgccccctccttccca
acaAGGCcgcccttcgtcctccctctcctccttcgcccctccatccggat
accaacctcccccccgtcctgcaccgtccttccctccctcctcatcggcC
GCATATCGTCCaccccaccgccctccctcctcctccccttcgcccctccc
cgaaGGCTCTACGTACCAACGTCCCAACGACCTGCACGGTGCTttgcctt
tttcctccccttgtaACGGTCGGAGAAAGGCACTTTTCGTCGGAATTACC
TACGCGGGGACCCGGGCCGAGCTCAAAGGCTGCGTGAACGACGTGAAGAA
CCTGCATGCTTTCATCCATCGTACCTACGGGTTCCAGCCTCAGGAGATGC
GGGTCTTGACGGACGATCCTGGCTTCTCGGAGGGGACGCCCACGCGCCAG
AATATCGTCCAAGGCATGCGCTGGctcgtgggggggggctcggCATGGGG
ACAGGTGAGGGA back to topCoding sequence (CDS) from alignment at CM002463.1:187294..188305+ >rna4287 ID=rna4287|Name=rna4287|organism=Nannochloropsis gaditana|type=CDS|length=929bp|location=Sequence derived from alignment at CM002463.1:187294..188305+ (Nannochloropsis gaditana)
ATGGTGTATCCGGGAGCCCGCTTCCGTAAACAGCTACAggagcaacaaca
gcaaggGCCGTTGTCGGTGTCGATTCCTGTAGCTTCAGTCCAGCAGCCTT
CCCAACCACCTGCGCCTTCCTTGCCACAACATGGTTCTCACTACCCAGCA
gcacctcgcccccccccttcctacgcCCCAGTCGTCGCCGCCCCATCTGC
TTTTCAAAACTACCAGTCCTCAAGCCCACGCCCACAGCCACAACAACCTA
TTATAGCCACTGCCTATGCTGTGCCTGTGCAAAATGGCGCTTTTTCCGGA
CCAGGGGCCTATGGACACggccctcccatccccagtgcccccccccttcc
ccccccttccgccccacttcctcctccatggccgtcCACCCAAGCACCCA
CCAATCTTTACACTCCCGTCGGGGGTTTCGTGGCGAACAATGCGGTGGcc
acgccccctccttcccaacaAGGCcgcccttcgtcctccctctcctcctt
cgcccctccatccggataccaacctcccccccgtcctgcaccgtccttcc
ctccctcctcatcggcCGCATATCGTCCaccccaccgccctccctcctcc
tccccttcgcccctccccgaaGGCTCTACGTACCAACGTCCCAACGACCT
GCACGGTGCTttgcctttttcctccccttgtaACGGTCGGAGAAAGGCAC
TTTTCGTCGGAATTACCTACGCGGGGACCCGGGCCGAGCTCAAAGGCTGC
GTGAACGACGTGAAGAACCTGCATGCTTTCATCCATCGTACCTACGGGTT
CCAGCCTCAGGAGATGCGGGTCTTGACGGACGATCCTGGCTTCTCGGAGG
GGACGCCCACGCGCCAGAATATCGTCCAAGGCATGCGCTGGctcgtgggg
gggggctcggCATGGGGACAGGTGAGGGA back to top
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