rna4285, rna4285 (mRNA) Nannochloropsis gaditana

Overview
Namerna4285
Unique Namerna4285
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length771
Alignment locationCM002463.1:181431..182751 +

Link to JBrowse

Properties
Property NameValue
Productvesicle transport protein
Orig transcript idgnl|cribi|Naga_100365g3.936.mrna
Orig protein idgnl|cribi|Naga_100365g3.936
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:181431..182751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100365g3gene4130Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4285rna4285-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26400.1cds4275Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4285 ID=rna4285|Name=rna4285|organism=Nannochloropsis gaditana|type=mRNA|length=771bp
ATGAAAATCTCTAGGTTTCTCTTCATCTCCTTGGTGCCTATGATGGCCAG
GAGCACGTCGATGGGAGACAGGAGACGACGCTGCCCTGCTTTTAGCTTTC
TCGGGCTCACGCTACCAGCCATTCCAGACCTGCAAATGCCGACTTCACCC
ATCGAGGTGAAGTTGGTGTATCAGCGCGTCCTCGATCCAATACATTATGG
TGACTACTGTGGACCCACACCCGAGATCACCCCGGACACCGGCTGTCGCC
ATCCCCTCAACCTGGCTGCCTTGGACGACACGGATGAGATCTGCCGGCTG
CACGATCATTTCTATTGCAAATGTGATAGCGTGTACCACAGGCAGGGCAA
AAGCCCTCCCTCCTCCGCCCTGATCGCCACACGCTCCCTCTCCGCCGACT
TTCGAAAGACGTACTTCGCCAATCTGGACAAGGACTATTACATGTGCGTG
CACGAGGCGGATCAGGAAATGCTGGGAAAATTCGATACTTTGGTGTCTGA
GGGGCGCCTCCCTCCCTCCTACTGGGACCCTTTGACTCGCTGGAAGTTCG
ATTCTCTCCTGGATGTTTTCCGGCGCAACATGGCTGTGGACGCAGAGATC
CTGGACCTGCAAGCGCAAGATGGCCGGGAAAGAGGAAGAGCATACTGGTT
CGAGGAGGACGCGGACGCGCATGCGGTGAAGCAAGGGCCTGGGGATGACG
TGCCCCCTGCGCGGAGTGAAGGCAAGGGTTCGCAAGTAGTGACAGCTGCT
GCAACGTCGATGACGCATTAA
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protein sequence of rna4285

>rna4285-protein ID=rna4285-protein|Name=rna4285|organism=Nannochloropsis gaditana|type=polypeptide|length=205bp
MNLESGLGPGASSSSSSGPAAFATSSSSNFMDSARRLLGVEARPKTFCER
LEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPF
AVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLI
AFSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLGE
AGSYG
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mRNA from alignment at CM002463.1:181431..182751+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4285 ID=rna4285|Name=rna4285|organism=Nannochloropsis gaditana|type=mRNA|length=1321bp|location=Sequence derived from alignment at CM002463.1:181431..182751+ (Nannochloropsis gaditana)
TATGTGCTCTGAGGTAACTTGAACCTTTCCCAGATATCCATGGGAATTAC
AGTACCTGACATCTATCTCTTCACGCCCCACCGACGTCACACAAAGGAAC
GCAGAGCAAAAATCAGAATAGATGCGCTCGCACACATTAAATCTCAGTGC
CCCTTTATTACccagcgggggggggaaatggaagtAGAAAGCAGCACGCT
TTGAGCGACGTCACTGTTTACTAACCAGCTTTGAACCCTGGCGCGCATTA
TCCCGCACTGACCGTCTCACCACATTTTGGAGCCCCCTCTCACCGTCTTC
CACGGACACGGGATTTTTTCCCAGTGTAGGGGGTTGAGTGTTGCGGAGGT
ATGCTCGTTGACGTTGCATGTTTGCATTTCAGGCCGCGATGCCTAACGTG
TCGGTCGTCATCATCTTTCGAATTTTATTTTGACAATTTTCGCCTCTCAC
GTCGGAGCATTGCCCAACTAGGATACACGCCCAATTTTTGTTAAGGGACA
AATGAACTTGGAAAGCGGCTTGGGGCCGGGCGCTagctcttcgtcttcga
gCGGGCCCGCCGCTTTTgctacctcgtcctcctccaattttATGGACAGC
GCCCGCCGTCTGCTGGGAGTGGAAGCACGACCTAAAACCTTCTGCGAACG
CCTGGAAGAAGATATgtgctggtggtgcccgACCTTGACCTGGCAGCAAC
GTCTCTTTGGCTGCTTGTGCTGCTTCCTTGTGGGTATGATCCTGGAGTTC
GgttccttcttccgcttcacTAAACTCCTGACCGGCCACCCAGAGCCCTT
TGCGGTCATGTACACGATCGGCAACCTCATCTCCCTGGCCggttcctgct
tcctctccggGCCCTTCTCGCAGGTCAAGTCCATGTTTCACCCCACCCGC
GCGGTTTGCACCAGTGTGTACGTCCTCACTCTGGTGttcaccctcctcat
cgccttctccgaCGTGCCCGGGCAAGGCCCCCTGTTGGTCTTGATGATCA
TCGTTCAATTCTTGTCCCTGTCCTACTACATCCTCTCATACATCCCCTTC
GCCCGGCAGATGGTGTGGCAGACGTGTGGGAGTTGTCTGGGCCtagggga
ggcggggtccTATGGATGAAGGGGGGTTAGAGGGGCACGTGTGCAGAGAG
CACGGATGTTGAGGCGCGGAAAGCGTGTACATACCACAGACAGTAAAAAA
GCAACCATCTTTGTCATGCGCGctgaggacggggaggggggggggggagg
ttcagAAACACCGCCCGGCCCACTGCCTTGCTCCAGGTTCGCTCAGACCT
TATAAGCCATACCAGGCATGA
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Coding sequence (CDS) from alignment at CM002463.1:181431..182751+

>rna4285 ID=rna4285|Name=rna4285|organism=Nannochloropsis gaditana|type=CDS|length=618bp|location=Sequence derived from alignment at CM002463.1:181431..182751+ (Nannochloropsis gaditana)
ATGAACTTGGAAAGCGGCTTGGGGCCGGGCGCTagctcttcgtcttcgag
CGGGCCCGCCGCTTTTgctacctcgtcctcctccaattttATGGACAGCG
CCCGCCGTCTGCTGGGAGTGGAAGCACGACCTAAAACCTTCTGCGAACGC
CTGGAAGAAGATATgtgctggtggtgcccgACCTTGACCTGGCAGCAACG
TCTCTTTGGCTGCTTGTGCTGCTTCCTTGTGGGTATGATCCTGGAGTTCG
gttccttcttccgcttcacTAAACTCCTGACCGGCCACCCAGAGCCCTTT
GCGGTCATGTACACGATCGGCAACCTCATCTCCCTGGCCggttcctgctt
cctctccggGCCCTTCTCGCAGGTCAAGTCCATGTTTCACCCCACCCGCG
CGGTTTGCACCAGTGTGTACGTCCTCACTCTGGTGttcaccctcctcatc
gccttctccgaCGTGCCCGGGCAAGGCCCCCTGTTGGTCTTGATGATCAT
CGTTCAATTCTTGTCCCTGTCCTACTACATCCTCTCATACATCCCCTTCG
CCCGGCAGATGGTGTGGCAGACGTGTGGGAGTTGTCTGGGCCtaggggag
gcggggtccTATGGATGA
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Synonyms
Publications