EWM26400.1, cds4275 (CDS) Nannochloropsis gaditana

Overview
NameEWM26400.1
Unique Namecds4275
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:181932..182549 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26400.1
Productvesicle transport protein
Orig transcript idgnl|cribi|Naga_100365g3.936.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:181932..182549 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011691Vesicle_transpt_SFT2
IPR007305Vesicle_transpt_Got1/SFT2
Homology
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|553193980|ref|XP_005855868.1| (vesicle transport protein [Nannochloropsis gaditana CCMP526] >gi|422293193|gb|EKU20493.1| vesicle transport protein [Nannochloropsis gaditana CCMP526] >gi|585108417|gb|EWM26400.1| vesicle transport protein [Nannochloropsis gaditana])

HSP 1 Score: 414.846 bits (1065), Expect = 1.288e-146
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query:    1 MNLESGLGPGASSSSSSGPAAFATSSSSNFMDSARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLGEAGSYG 205
            MNLESGLGPGASSSSSSGPAAFATSSSSNFMDSARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLGEAGSYG
Sbjct:    1 MNLESGLGPGASSSSSSGPAAFATSSSSNFMDSARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLGEAGSYG 205          
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|676391017|ref|XP_009038786.1| (hypothetical protein AURANDRAFT_29003 [Aureococcus anophagefferens] >gi|323450734|gb|EGB06614.1| hypothetical protein AURANDRAFT_29003 [Aureococcus anophagefferens])

HSP 1 Score: 160.999 bits (406), Expect = 9.018e-47
Identity = 75/167 (44.91%), Postives = 113/167 (67.66%), Query Frame = 0
Query:   31 MDSARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSD--VPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSC 195
            M S R LL  E RP+T  E++EE+ C  CP L+W+QRL G   CF +G+++E GSF R  +L+ G+P+PFAV Y++GN+I++  S FL+GP+ Q KSM  PTR + T+ Y++ +  TL +A  D  +P +  L++L++ VQ ++L +Y++SYIPFAR  V   C  C
Sbjct:    1 MASTRSLLTGEPRPQTVAEQVEEECCKACPRLSWKQRLIGFSLCFALGVVVELGSFMRIVELVGGNPKPFAVTYSLGNVIAICSSFFLAGPYKQCKSMLAPTRVIATATYLVAIGATLFVALFDARIPARAGLIILLVCVQTIALFWYMISYIPFARDFVKNCCKGC 167          
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|299471052|emb|CBN78912.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 147.517 bits (371), Expect = 1.846e-41
Identity = 72/159 (45.28%), Postives = 108/159 (67.92%), Query Frame = 0
Query:   33 SARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIA---FSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMV 188
            S+ RLLG E   K+  + +EE +C  CP+L+W+ RL G   C  VG  L FGS FR  +LLTG+P PF + +++G+ +++  S FL+GP+ Q+K MF+P RAV TS+Y+ TL  TL +A   ++ VP +G LL+ +++ QFLS  +Y LSY+PFAR+ +
Sbjct:   11 SSMRLLGGEPEEKSTLQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYASVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFM 169          
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|695420911|ref|XP_009528041.1| (hypothetical protein PHYSODRAFT_255591 [Phytophthora sojae] >gi|348679166|gb|EGZ18983.1| hypothetical protein PHYSODRAFT_255591 [Phytophthora sojae])

HSP 1 Score: 133.65 bits (335), Expect = 6.057e-36
Identity = 65/144 (45.14%), Postives = 94/144 (65.28%), Query Frame = 0
Query:   57 WWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLM-IIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLG 199
            W CP+L++Q+R+ GC+ CF++G +L  GS FR  KL+ G+P PFA+ YTIGN++S+  + F  GP+ QV++MFH  R     VYV+ +  TLL+ FS       LLVL+ +IVQFL+L +Y LSY+P+ R +    C    GL 
Sbjct:   36 WLCPSLSYQERVIGCVTCFMLGFVLSLGSTFRLAKLVHGNPAPFAIAYTIGNVLSIGCTTFFVGPWKQVQTMFHSKRRYSALVYVVFIFVTLLLCFSPHIHHRMLLVLLSVIVQFLALVWYTLSYVPYGRSIALSCCKRVCGLA 179          
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|673014426|ref|XP_008861174.1| (hypothetical protein H310_00248 [Aphanomyces invadans] >gi|574482772|gb|ETW09763.1| hypothetical protein H310_00248 [Aphanomyces invadans])

HSP 1 Score: 127.487 bits (319), Expect = 1.600e-33
Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 0
Query:   28 SNFMDSARRLLGVEARPK--TFCERLEEDMCWWCPTL--TWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFS-DVPGQGPLLVLMIIVQFLSLSYYILSYIPFAR 185
             +F    +RLL     P   T  +  ++D    CP+L  ++++RL GC  CF++GM+L FGS  R  +L+ G P PFA+ YT+GNL+SL  + F  GP SQ KSMFH  R V  ++Y+  +  TL + FS +VP +  L+V+ ++VQF +LS+Y LSYIP+ +
Sbjct:    3 ESFKQQGKRLLDGNNEPASPTVSQSEDQDYQVSCPSLRLSYKERLLGCGICFVLGMMLSFGSTVRLGQLVAGRPAPFAICYTLGNLLSLGCTMFFVGPVSQCKSMFHAKRRVAAAIYLTFIGVTLALCFSPNVPHRSGLVVVTVLVQFCALSWYTLSYIPYGQ 165          
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|953495670|emb|CEG42566.1| (vesicle transport protein [Plasmopara halstedii])

HSP 1 Score: 126.716 bits (317), Expect = 2.460e-33
Identity = 61/146 (41.78%), Postives = 89/146 (60.96%), Query Frame = 0
Query:   59 CPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLM-IIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLGEAGS 203
            CP+L++ +R  GC+ CFL+G IL  GS FR  KL+ G+P PFA+ YTIGN++S+  + F  GP+ Q+++MFH  R      YV  +  TLL+ FS         VL+ ++VQF++L +Y LSY+P+ R +   TC   LGL     
Sbjct:   34 CPSLSYHERFIGCITCFLLGFILSLGSTFRLAKLMHGNPAPFAIAYTIGNILSIGSTTFFVGPWKQMQTMFHTKRRYSAVFYVSFIFVTLLLCFSHHIHHRLFFVLISLLVQFMALIWYTLSYVPYGRTIAKTTCKRFLGLSNDDD 179          
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|698794762|ref|XP_009830410.1| (hypothetical protein H257_06757 [Aphanomyces astaci] >gi|574114999|gb|ETV80486.1| hypothetical protein H257_06757 [Aphanomyces astaci])

HSP 1 Score: 124.02 bits (310), Expect = 3.188e-32
Identity = 67/163 (41.10%), Postives = 100/163 (61.35%), Query Frame = 0
Query:   28 SNFMDSARRLLGVEARPKTFCERLEEDMCWW--CPTL--TWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFS-DVPGQGPLLVLMIIVQFLSLSYYILSYIPFAR 185
             +F    +RLL     P +    L +D  +   CP+L  ++++RL GC  CF +GM+L FGS  R  +L+ G P PFA+ YT+GNL+S+  + F  GP SQ +SMFH  R V  ++Y+  +  TL + FS  VP +  L+VL ++VQF +LS+Y LSYIP+ +
Sbjct:    3 ESFKQQGKRLLDGNNEPASPTVALSDDQDYQASCPSLRLSYKERLLGCGICFFLGMMLSFGSTARLGQLVAGRPAPFAICYTLGNLLSVGCTMFFVGPVSQCQSMFHAKRRVAAAIYLGFIAITLTLCFSPSVPHRSGLVVLSVLVQFGALSWYTLSYIPYGQ 165          
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|922855804|gb|KOO24220.1| (vesicle transport protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 120.939 bits (302), Expect = 8.136e-31
Identity = 77/195 (39.49%), Postives = 111/195 (56.92%), Query Frame = 0
Query:   10 GASSSSSSGPAAFATSSSSNFMDSARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPL--------LVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCL 196
            G   S    P   ++++ ++F+D  R  +G++        R EE +   CPTLT++QRL+G   CF +G I+  GS   + KLL G+P PFA+ YT+GNLIS+A + FL GP  Q+K M HPTRA    V+VL+   TL+ AF  +P    L        +V  I+VQF +  +Y LSYIP+ R+M    C +C 
Sbjct:    8 GGGDSEEDTPYQ-SSAAQASFLDGVRGAVGLQP------TRREEVIDATCPTLTFKQRLWGFGICFGIGCIVSLGSMMFWHKLLQGNPGPFAINYTLGNLISVASTFFLMGPHRQLKRMSHPTRAGVALVFVLSAAATLVCAFL-LPSMTQLSDNVIAVIIVACIVVQFSAFFWYALSYIPYGRRM----CKACF 190          
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|1210512092|dbj|GAX28947.1| (hypothetical protein FisN_20Lu271 [Fistulifera solaris])

HSP 1 Score: 119.013 bits (297), Expect = 2.574e-30
Identity = 64/153 (41.83%), Postives = 100/153 (65.36%), Query Frame = 0
Query:   38 LGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGH-PEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPG-QGPLLVLMIIVQFLSLSYYILSYIPFARQMV 188
            L VE+  +   E  E   C+  P +TW++RL GC+ C L G +L  GSF+R   L+  H P PF +  TIGN+I+LAGS FL+GP +Q K+M+   R + T +Y+ +L  TL +AF  +PG +G  L+L+++ Q++S+++Y LSY+PFA  ++
Sbjct:   25 LDVESIEEPVDETGEPCSCF--PEMTWRERLLGCVTCMLCGYMLSIGSFWRIKDLVINHDPLPFVLNATIGNIIALAGSFFLTGPKAQWKNMWLEKRRIATGLYLGSLFLTLFVAFLPIPGPEGFYLLLLMLCQYISITWYTLSYVPFAHDII 175          
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|91089741|ref|XP_975144.1| (PREDICTED: vesicle transport protein SFT2B [Tribolium castaneum] >gi|642933654|ref|XP_008197510.1| PREDICTED: vesicle transport protein SFT2B [Tribolium castaneum] >gi|270011305|gb|EFA07753.1| Vesicle transport protein SFT2B-like Protein [Tribolium castaneum])

HSP 1 Score: 117.857 bits (294), Expect = 4.646e-30
Identity = 70/171 (40.94%), Postives = 101/171 (59.06%), Query Frame = 0
Query:   31 MDSARRLLGVEARPKT---FCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEF-GSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCLG 197
            MD  RR+LG    P        +L E       TL+W  RL   L CF++G++L F GSF  F   L G    FAV YT+GN++S+A +CFL GPF+Q+K MF  TRA+ T + + + + TL+ A   V     L ++ II+Q L++++Y LSYIP+AR  V +T  +C+G
Sbjct:    1 MDKLRRVLGGNDSPDEESGIMSQLNE-----TTTLSWSTRLKAFLFCFILGILLSFLGSFALF---LNGGLSVFAVFYTLGNILSMASTCFLMGPFNQIKKMFASTRAIATVLVIASFILTLVSAL--VLHNALLALIFIIIQSLAMTWYSLSYIPYARDAVKKTFIACIG 161          
The following BLAST results are available for this feature:
BLAST of EWM26400.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553193980|ref|XP_005855868.1|1.288e-146100.00vesicle transport protein [Nannochloropsis gaditan... [more]
gi|676391017|ref|XP_009038786.1|9.018e-4744.91hypothetical protein AURANDRAFT_29003 [Aureococcus... [more]
gi|299471052|emb|CBN78912.1|1.846e-4145.28conserved unknown protein [Ectocarpus siliculosus][more]
gi|695420911|ref|XP_009528041.1|6.057e-3645.14hypothetical protein PHYSODRAFT_255591 [Phytophtho... [more]
gi|673014426|ref|XP_008861174.1|1.600e-3341.72hypothetical protein H310_00248 [Aphanomyces invad... [more]
gi|953495670|emb|CEG42566.1|2.460e-3341.78vesicle transport protein [Plasmopara halstedii][more]
gi|698794762|ref|XP_009830410.1|3.188e-3241.10hypothetical protein H257_06757 [Aphanomyces astac... [more]
gi|922855804|gb|KOO24220.1|8.136e-3139.49vesicle transport protein [Chrysochromulina sp. CC... [more]
gi|1210512092|dbj|GAX28947.1|2.574e-3041.83hypothetical protein FisN_20Lu271 [Fistulifera sol... [more]
gi|91089741|ref|XP_975144.1|4.646e-3040.94PREDICTED: vesicle transport protein SFT2B [Tribol... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4285rna4285Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications