EWM26400.1, cds4275 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|553193980|ref|XP_005855868.1| (vesicle transport protein [Nannochloropsis gaditana CCMP526] >gi|422293193|gb|EKU20493.1| vesicle transport protein [Nannochloropsis gaditana CCMP526] >gi|585108417|gb|EWM26400.1| vesicle transport protein [Nannochloropsis gaditana]) HSP 1 Score: 414.846 bits (1065), Expect = 1.288e-146 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query: 1 MNLESGLGPGASSSSSSGPAAFATSSSSNFMDSARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLGEAGSYG 205
MNLESGLGPGASSSSSSGPAAFATSSSSNFMDSARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLGEAGSYG
Sbjct: 1 MNLESGLGPGASSSSSSGPAAFATSSSSNFMDSARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLGEAGSYG 205
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|676391017|ref|XP_009038786.1| (hypothetical protein AURANDRAFT_29003 [Aureococcus anophagefferens] >gi|323450734|gb|EGB06614.1| hypothetical protein AURANDRAFT_29003 [Aureococcus anophagefferens]) HSP 1 Score: 160.999 bits (406), Expect = 9.018e-47 Identity = 75/167 (44.91%), Postives = 113/167 (67.66%), Query Frame = 0
Query: 31 MDSARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSD--VPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSC 195
M S R LL E RP+T E++EE+ C CP L+W+QRL G CF +G+++E GSF R +L+ G+P+PFAV Y++GN+I++ S FL+GP+ Q KSM PTR + T+ Y++ + TL +A D +P + L++L++ VQ ++L +Y++SYIPFAR V C C
Sbjct: 1 MASTRSLLTGEPRPQTVAEQVEEECCKACPRLSWKQRLIGFSLCFALGVVVELGSFMRIVELVGGNPKPFAVTYSLGNVIAICSSFFLAGPYKQCKSMLAPTRVIATATYLVAIGATLFVALFDARIPARAGLIILLVCVQTIALFWYMISYIPFARDFVKNCCKGC 167
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|299471052|emb|CBN78912.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 147.517 bits (371), Expect = 1.846e-41 Identity = 72/159 (45.28%), Postives = 108/159 (67.92%), Query Frame = 0
Query: 33 SARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIA---FSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMV 188
S+ RLLG E K+ + +EE +C CP+L+W+ RL G C VG L FGS FR +LLTG+P PF + +++G+ +++ S FL+GP+ Q+K MF+P RAV TS+Y+ TL TL +A ++ VP +G LL+ +++ QFLS +Y LSY+PFAR+ +
Sbjct: 11 SSMRLLGGEPEEKSTLQEMEEAVCSVCPSLSWRNRLIGYGACLAVGFCLTFGSLFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYASVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFM 169
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|695420911|ref|XP_009528041.1| (hypothetical protein PHYSODRAFT_255591 [Phytophthora sojae] >gi|348679166|gb|EGZ18983.1| hypothetical protein PHYSODRAFT_255591 [Phytophthora sojae]) HSP 1 Score: 133.65 bits (335), Expect = 6.057e-36 Identity = 65/144 (45.14%), Postives = 94/144 (65.28%), Query Frame = 0
Query: 57 WWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLM-IIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLG 199
W CP+L++Q+R+ GC+ CF++G +L GS FR KL+ G+P PFA+ YTIGN++S+ + F GP+ QV++MFH R VYV+ + TLL+ FS LLVL+ +IVQFL+L +Y LSY+P+ R + C GL
Sbjct: 36 WLCPSLSYQERVIGCVTCFMLGFVLSLGSTFRLAKLVHGNPAPFAIAYTIGNVLSIGCTTFFVGPWKQVQTMFHSKRRYSALVYVVFIFVTLLLCFSPHIHHRMLLVLLSVIVQFLALVWYTLSYVPYGRSIALSCCKRVCGLA 179
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|673014426|ref|XP_008861174.1| (hypothetical protein H310_00248 [Aphanomyces invadans] >gi|574482772|gb|ETW09763.1| hypothetical protein H310_00248 [Aphanomyces invadans]) HSP 1 Score: 127.487 bits (319), Expect = 1.600e-33 Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 0
Query: 28 SNFMDSARRLLGVEARPK--TFCERLEEDMCWWCPTL--TWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFS-DVPGQGPLLVLMIIVQFLSLSYYILSYIPFAR 185
+F +RLL P T + ++D CP+L ++++RL GC CF++GM+L FGS R +L+ G P PFA+ YT+GNL+SL + F GP SQ KSMFH R V ++Y+ + TL + FS +VP + L+V+ ++VQF +LS+Y LSYIP+ +
Sbjct: 3 ESFKQQGKRLLDGNNEPASPTVSQSEDQDYQVSCPSLRLSYKERLLGCGICFVLGMMLSFGSTVRLGQLVAGRPAPFAICYTLGNLLSLGCTMFFVGPVSQCKSMFHAKRRVAAAIYLTFIGVTLALCFSPNVPHRSGLVVVTVLVQFCALSWYTLSYIPYGQ 165
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|953495670|emb|CEG42566.1| (vesicle transport protein [Plasmopara halstedii]) HSP 1 Score: 126.716 bits (317), Expect = 2.460e-33 Identity = 61/146 (41.78%), Postives = 89/146 (60.96%), Query Frame = 0
Query: 59 CPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLM-IIVQFLSLSYYILSYIPFARQMVWQTCGSCLGLGEAGS 203
CP+L++ +R GC+ CFL+G IL GS FR KL+ G+P PFA+ YTIGN++S+ + F GP+ Q+++MFH R YV + TLL+ FS VL+ ++VQF++L +Y LSY+P+ R + TC LGL
Sbjct: 34 CPSLSYHERFIGCITCFLLGFILSLGSTFRLAKLMHGNPAPFAIAYTIGNILSIGSTTFFVGPWKQMQTMFHTKRRYSAVFYVSFIFVTLLLCFSHHIHHRLFFVLISLLVQFMALIWYTLSYVPYGRTIAKTTCKRFLGLSNDDD 179
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|698794762|ref|XP_009830410.1| (hypothetical protein H257_06757 [Aphanomyces astaci] >gi|574114999|gb|ETV80486.1| hypothetical protein H257_06757 [Aphanomyces astaci]) HSP 1 Score: 124.02 bits (310), Expect = 3.188e-32 Identity = 67/163 (41.10%), Postives = 100/163 (61.35%), Query Frame = 0
Query: 28 SNFMDSARRLLGVEARPKTFCERLEEDMCWW--CPTL--TWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFS-DVPGQGPLLVLMIIVQFLSLSYYILSYIPFAR 185
+F +RLL P + L +D + CP+L ++++RL GC CF +GM+L FGS R +L+ G P PFA+ YT+GNL+S+ + F GP SQ +SMFH R V ++Y+ + TL + FS VP + L+VL ++VQF +LS+Y LSYIP+ +
Sbjct: 3 ESFKQQGKRLLDGNNEPASPTVALSDDQDYQASCPSLRLSYKERLLGCGICFFLGMMLSFGSTARLGQLVAGRPAPFAICYTLGNLLSVGCTMFFVGPVSQCQSMFHAKRRVAAAIYLGFIAITLTLCFSPSVPHRSGLVVLSVLVQFGALSWYTLSYIPYGQ 165
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|922855804|gb|KOO24220.1| (vesicle transport protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 120.939 bits (302), Expect = 8.136e-31 Identity = 77/195 (39.49%), Postives = 111/195 (56.92%), Query Frame = 0
Query: 10 GASSSSSSGPAAFATSSSSNFMDSARRLLGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPL--------LVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCL 196
G S P ++++ ++F+D R +G++ R EE + CPTLT++QRL+G CF +G I+ GS + KLL G+P PFA+ YT+GNLIS+A + FL GP Q+K M HPTRA V+VL+ TL+ AF +P L +V I+VQF + +Y LSYIP+ R+M C +C
Sbjct: 8 GGGDSEEDTPYQ-SSAAQASFLDGVRGAVGLQP------TRREEVIDATCPTLTFKQRLWGFGICFGIGCIVSLGSMMFWHKLLQGNPGPFAINYTLGNLISVASTFFLMGPHRQLKRMSHPTRAGVALVFVLSAAATLVCAFL-LPSMTQLSDNVIAVIIVACIVVQFSAFFWYALSYIPYGRRM----CKACF 190
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|1210512092|dbj|GAX28947.1| (hypothetical protein FisN_20Lu271 [Fistulifera solaris]) HSP 1 Score: 119.013 bits (297), Expect = 2.574e-30 Identity = 64/153 (41.83%), Postives = 100/153 (65.36%), Query Frame = 0
Query: 38 LGVEARPKTFCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEFGSFFRFTKLLTGH-PEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPG-QGPLLVLMIIVQFLSLSYYILSYIPFARQMV 188
L VE+ + E E C+ P +TW++RL GC+ C L G +L GSF+R L+ H P PF + TIGN+I+LAGS FL+GP +Q K+M+ R + T +Y+ +L TL +AF +PG +G L+L+++ Q++S+++Y LSY+PFA ++
Sbjct: 25 LDVESIEEPVDETGEPCSCF--PEMTWRERLLGCVTCMLCGYMLSIGSFWRIKDLVINHDPLPFVLNATIGNIIALAGSFFLTGPKAQWKNMWLEKRRIATGLYLGSLFLTLFVAFLPIPGPEGFYLLLLMLCQYISITWYTLSYVPFAHDII 175
BLAST of EWM26400.1 vs. NCBI_GenBank
Match: gi|91089741|ref|XP_975144.1| (PREDICTED: vesicle transport protein SFT2B [Tribolium castaneum] >gi|642933654|ref|XP_008197510.1| PREDICTED: vesicle transport protein SFT2B [Tribolium castaneum] >gi|270011305|gb|EFA07753.1| Vesicle transport protein SFT2B-like Protein [Tribolium castaneum]) HSP 1 Score: 117.857 bits (294), Expect = 4.646e-30 Identity = 70/171 (40.94%), Postives = 101/171 (59.06%), Query Frame = 0
Query: 31 MDSARRLLGVEARPKT---FCERLEEDMCWWCPTLTWQQRLFGCLCCFLVGMILEF-GSFFRFTKLLTGHPEPFAVMYTIGNLISLAGSCFLSGPFSQVKSMFHPTRAVCTSVYVLTLVFTLLIAFSDVPGQGPLLVLMIIVQFLSLSYYILSYIPFARQMVWQTCGSCLG 197
MD RR+LG P +L E TL+W RL L CF++G++L F GSF F L G FAV YT+GN++S+A +CFL GPF+Q+K MF TRA+ T + + + + TL+ A V L ++ II+Q L++++Y LSYIP+AR V +T +C+G
Sbjct: 1 MDKLRRVLGGNDSPDEESGIMSQLNE-----TTTLSWSTRLKAFLFCFILGILLSFLGSFALF---LNGGLSVFAVFYTLGNILSMASTCFLMGPFNQIKKMFASTRAIATVLVIASFILTLVSAL--VLHNALLALIFIIIQSLAMTWYSLSYIPYARDAVKKTFIACIG 161 The following BLAST results are available for this feature:
BLAST of EWM26400.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|