rna4282, rna4282 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4282
Unique Name	rna4282
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	792
Alignment location	CM002463.1:174645..176857 +

Link to JBrowse

Properties


Property Name	Value
Product	dna helicase ii
Orig transcript id	gnl\|cribi\|Naga_100365g6.935.mrna
Orig protein id	gnl\|cribi\|Naga_100365g6.935
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:174645..176857 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100365g6	gene4127	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4282	rna4282-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26399.1	cds4272	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:174645..176857+
coding sequence from alignment at CM002463.1:174645..176857+

mRNA sequence

>rna4282 ID=rna4282|Name=rna4282|organism=Nannochloropsis gaditana|type=mRNA|length=792bp
CGACATACTCATTGTGTTTGATATCTATACAGAGCAGAAGGTGCTAGCTT
CTCGCCTGAAATGACATCCGGACTGGCCCTACTCGACGAACGGCGCCCGT
GAGCCTATCCTTTCTCCCTCTTCAAAGAACAAGAGCACAGCGAGGAGTGC
GGGACTGGCCAAACCCCTGCGAGGCTCGTGCCACTGCCGAAGGGAACCAA
ATCGTGGCAGTGACGACGCTTAAAAAGAATGCGGGCGTGTGTGTGTGTCG
TGGCTCGCGGATGCGGGAGACAGATGAAAAGGTGGCGGTCCCGAGGTCTT
TACCTCCTTCCTCATCTTTTTCTTGCCGTGATGTTCCTACCAATCATCTG
GATATCCGCCATTCCCACACCCGCCTTTGTTTCAAGCCCAGGAGGCTATC
TTTTCTCGCCTCCCGGGCCTGGGGTCCGAGAGGCGCCTTGTCGTTTGTAT
TCCTCCACCTTATCTCGGGATATACGGGTGCGGCGAGTGGTCAATACACC
CCCACCCCCCATTCCTTACGCCCCAAACCCACTTTATCCGCCCTCTACCG
ATTCGCCCGCACCACGGACCCCAACTCTGGAGGATGAAATCGGGCGGACG
AGGGAGGACGGGCGGAGGGAGTGGGAAGACCAAGAGACGCGCGAGGAGGA
GGCGGAGGAGGATCGCGGGGGAAGGAGCGCGTCTGACGGGGCATGGGAAG
AGGGGCGGGTGGCGGGACGGGAGGCGGCCGGAGAAGCACCACAGCTGAAG
ACGGTGCGTGCGACGGTACTATACATGAGTCCAGCGTGGTAG

protein sequence of rna4282

>rna4282-protein ID=rna4282-protein|Name=rna4282|organism=Nannochloropsis gaditana|type=polypeptide|length=593bp
PTTSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASA
PTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIG
EIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVEPWR
RGREGGREGGGPEDGMSEGGGKGAVGSNGMEEARVEEGRGGGRRESTTSG
GLQAQAMAKESTTSGGLQAQAISKEGGEKGEGQPAAAAAESLDPNPSLPS
STPAVVQAAGTRTTPPTTSRTSSRRATQPAPLLPLSPTACGKPSATEDLS
PALPAHVLRDDAEVPSLIILSPTDELSLSPHAVATAARAVATTAAIAKGM
VLEEGGREEGGEGGKEGKSRQRQRQRTQRRLASSSPSTGTAKSPIVKARA
APDVLPSLQALLSDPAVLRKQLRPFYRACIQATGHTLNALPARENPRCRL
PLSQTPTHHLGLLAVAYLTSDRSLVAREGWGALRRLFRAILGVYGMTRGK
VPVWEKGGRGQVGGREEGEGKNAAKLKSVWRCGGEELGDVLLALLAQEEG
YLQVQGESGGKVRQGKSSGQGGKGSKVGGRKGREGSNGQEFGS

mRNA from alignment at CM002463.1:174645..176857+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4282 ID=rna4282|Name=rna4282|organism=Nannochloropsis gaditana|type=mRNA|length=2213bp|location=Sequence derived from alignment at CM002463.1:174645..176857+ (Nannochloropsis gaditana)
cccaccacctcccctggTGCCTCTGGCCGAGTGGTTTTGAGCACCATGCA
CGGAGTTAAAGGCCAAGAGTTCGACTTCGTCTTTTTGGCTGGGTGGGACG
AAGGTGtcttccccctgctcccccgccctccctccctccctgcctccgcc
ccgacctcctccccggccttggcggaggaACGGCGCTTGGCCTACGTGGC
ATTGACTCGGGCGCGTCTCAACGCCTGCATCACCTTTACCCACCGCCGGC
GCCTCCCGGGGGGGGCCTGgatcaccaccaccccgtcGCGGTTTATCGGG
GAAATTCCTCGGCGGTTGGTCCGTCTGCAGGTCTTGGGAAGTGCCCGATT
GCAACGTGGGATCCGTCCGAGCAACGACGTGGATTTTCGACGCTGGCGTC
CCACGGGGGTGAGGACTCGCCAGGATGGGTTGTTGGTGGAGCCGtggcgg
cgagggcgggagggagggcgggagggaggggggccggaAGACGGAAtgag
cgagggcgggggaaagggagcagtCGGCTCGAACGGGATGGAAGAAGcgc
gggtggaggaagggcgagggggagggcgaagggaaagCACGACGTCCGGA
GGGCTTCAGGCGCAGGCTATGGCAAAGGAAAGCACGACGTCCGGAGGGCT
TCAGGCGCAGGCTATatcaaaggagggaggggagaagggcgagggacagc
ccgccgccgctgctgcagAGAGCCTGGATCCAAACCcatctctcccctcc
tcgaccccagCAGTAGTGCAAGCTGCCGGGACAAGAACGACTCCCCCAAC
CACGTCTCGCACAAGCAGTCGCAGAGCTACCCAGCCAGCACCCTTGCTGC
CGCTGTCGCCTACCGCCTGCGGGAAGCCTTCGGCCACAGAGGACCTcagc
cccgccctccccgcccacgtcctgcGTGACGACGCCGAGGTGCCCAGCCT
CATtatcctctcccccaccgaCGAACTTTCCCTCAGCCCGCACGCCGTTG
CCACTGCTGCCCGTGCCGTAGCGACCACGGCCGCCATTGCGAAGGGCatg
gtgctggaggaaggtgggagggaggaagggggggagggcgggaaggaggg
caagtcGCGGCAGAGGCAAAGACAACGGACTCAACGCCGGCTCGCTTCTT
CGTCCCCGAGCACGGGGACGGCGAAAAGCCCGATCGTTAAAGCCCGAGCG
GCCCCGGacgtgcttccctccctccaggccctcctctccgaccCGGCCGT
GCTCCGAAAACAACTCCGCCCCTTCTACCGCGCCTGTATTCAGGCAACAG
GGCATACCTTGAACGCCCTTCCGGCGCGGGAGAACCCCCGctgtcgcctt
cccctctctcagACCCCGACCCACCATTTGGGCCTCCTGGCAGTGGCTTA
TTTGACGTCCGATCGGAGCCTCGTCGCacgggaggggtggggggcgcttc
gccgcctttttcgcgccattttgggCGTCTATGGGATGACACGTGGGAAA
GTGCCCGTCTGGGAGAAAGGCGGACGGGggcaggtgggagggagagagga
aggggaaggaaaaaacgCGGCCAAGTTGAAGTCGGTCTGGCGGTGCGGCG
GCGAGGAGCTTGGCGACGTGTTGCTGGCCCTGttggcgcaggaggaaggg
tacctccaggtccagggggagagcggagggaaggtcaggcaggggaaaag
ctcagggcagggaggaaaagggagcaaagtaggagggaggaagggaaggg
agggtagcAACGGTCAGGAATTTGGGTCTTAAGCCGAGGGAGTCACTGTA
TTTTGGTGCGTGACAACGCCTGTAGGATGGTAAACAGATAAGATGCAGAT
AAGAGACAGTAACACTGAGGTAAAATTCTGAAAATATAGACGAAGTATGT
TCACCGCGTAAGTGTACGATACGAGCAGCATACGTATTGTTTGTCATGGC
ATGGAAGAAAGGCACTTGGATGTACTCCCACTGGGAAAAGGCCGAGCata
tttgaaaaaaaaaaccgACGATCGCCGACTCTTTCGACGCCTTCCTGTGT
GGAGCGAGGGACCACCGTTGCAGGATTTTAAAACAAGCAAGAGGTGCGTT
TTGAAAAAGAACATTCAAGAATGAAAGCAAACCCTTCTCACAGGACCAGG
GGGTGGACAGAGTACCGTTTTGATGTGAGGTTGATTTAAAAGTCCGATGG
CGGGATGAGTAAC

Coding sequence (CDS) from alignment at CM002463.1:174645..176857+

>rna4282 ID=rna4282|Name=rna4282|organism=Nannochloropsis gaditana|type=CDS|length=1782bp|location=Sequence derived from alignment at CM002463.1:174645..176857+ (Nannochloropsis gaditana)
cccaccacctcccctggTGCCTCTGGCCGAGTGGTTTTGAGCACCATGCA
CGGAGTTAAAGGCCAAGAGTTCGACTTCGTCTTTTTGGCTGGGTGGGACG
AAGGTGtcttccccctgctcccccgccctccctccctccctgcctccgcc
ccgacctcctccccggccttggcggaggaACGGCGCTTGGCCTACGTGGC
ATTGACTCGGGCGCGTCTCAACGCCTGCATCACCTTTACCCACCGCCGGC
GCCTCCCGGGGGGGGCCTGgatcaccaccaccccgtcGCGGTTTATCGGG
GAAATTCCTCGGCGGTTGGTCCGTCTGCAGGTCTTGGGAAGTGCCCGATT
GCAACGTGGGATCCGTCCGAGCAACGACGTGGATTTTCGACGCTGGCGTC
CCACGGGGGTGAGGACTCGCCAGGATGGGTTGTTGGTGGAGCCGtggcgg
cgagggcgggagggagggcgggagggaggggggccggaAGACGGAAtgag
cgagggcgggggaaagggagcagtCGGCTCGAACGGGATGGAAGAAGcgc
gggtggaggaagggcgagggggagggcgaagggaaagCACGACGTCCGGA
GGGCTTCAGGCGCAGGCTATGGCAAAGGAAAGCACGACGTCCGGAGGGCT
TCAGGCGCAGGCTATatcaaaggagggaggggagaagggcgagggacagc
ccgccgccgctgctgcagAGAGCCTGGATCCAAACCcatctctcccctcc
tcgaccccagCAGTAGTGCAAGCTGCCGGGACAAGAACGACTCCCCCAAC
CACGTCTCGCACAAGCAGTCGCAGAGCTACCCAGCCAGCACCCTTGCTGC
CGCTGTCGCCTACCGCCTGCGGGAAGCCTTCGGCCACAGAGGACCTcagc
cccgccctccccgcccacgtcctgcGTGACGACGCCGAGGTGCCCAGCCT
CATtatcctctcccccaccgaCGAACTTTCCCTCAGCCCGCACGCCGTTG
CCACTGCTGCCCGTGCCGTAGCGACCACGGCCGCCATTGCGAAGGGCatg
gtgctggaggaaggtgggagggaggaagggggggagggcgggaaggaggg
caagtcGCGGCAGAGGCAAAGACAACGGACTCAACGCCGGCTCGCTTCTT
CGTCCCCGAGCACGGGGACGGCGAAAAGCCCGATCGTTAAAGCCCGAGCG
GCCCCGGacgtgcttccctccctccaggccctcctctccgaccCGGCCGT
GCTCCGAAAACAACTCCGCCCCTTCTACCGCGCCTGTATTCAGGCAACAG
GGCATACCTTGAACGCCCTTCCGGCGCGGGAGAACCCCCGctgtcgcctt
cccctctctcagACCCCGACCCACCATTTGGGCCTCCTGGCAGTGGCTTA
TTTGACGTCCGATCGGAGCCTCGTCGCacgggaggggtggggggcgcttc
gccgcctttttcgcgccattttgggCGTCTATGGGATGACACGTGGGAAA
GTGCCCGTCTGGGAGAAAGGCGGACGGGggcaggtgggagggagagagga
aggggaaggaaaaaacgCGGCCAAGTTGAAGTCGGTCTGGCGGTGCGGCG
GCGAGGAGCTTGGCGACGTGTTGCTGGCCCTGttggcgcaggaggaaggg
tacctccaggtccagggggagagcggagggaaggtcaggcaggggaaaag
ctcagggcagggaggaaaagggagcaaagtaggagggaggaagggaaggg
agggtagcAACGGTCAGGAATTTGGGTCTTAA

Synonyms

Publications