EWM26399.1, cds4272 (CDS) Nannochloropsis gaditana

Overview
NameEWM26399.1
Unique Namecds4272
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:174645..176426 +

Link to JBrowse

Properties
Property NameValue
Start range174645
Start range.
Protein idEWM26399.1
Productdna helicase ii
Partialtrue
Orig transcript idgnl|cribi|Naga_100365g6.935.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:174645..176426 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0004003ATP-dependent DNA helicase activity
GO:0003677DNA binding
GO:0016787hydrolase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR000212DNA_helicase_UvrD/REP
IPR027417P-loop_NTPase
IPR014017DNA_helicase_UvrD-like_C
Homology
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|585108416|gb|EWM26399.1| (dna helicase ii, partial [Nannochloropsis gaditana])

HSP 1 Score: 1165.21 bits (3013), Expect = 0.000e+0
Identity = 593/593 (100.00%), Postives = 593/593 (100.00%), Query Frame = 0
Query:    1 PTTSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVEPWRRGREGGREGGGPEDGMSEGGGKGAVGSNGMEEARVEEGRGGGRRESTTSGGLQAQAMAKESTTSGGLQAQAISKEGGEKGEGQPAAAAAESLDPNPSLPSSTPAVVQAAGTRTTPPTTSRTSSRRATQPAPLLPLSPTACGKPSATEDLSPALPAHVLRDDAEVPSLIILSPTDELSLSPHAVATAARAVATTAAIAKGMVLEEGGREEGGEGGKEGKSRQRQRQRTQRRLASSSPSTGTAKSPIVKARAAPDVLPSLQALLSDPAVLRKQLRPFYRACIQATGHTLNALPARENPRCRLPLSQTPTHHLGLLAVAYLTSDRSLVAREGWGALRRLFRAILGVYGMTRGKVPVWEKGGRGQVGGREEGEGKNAAKLKSVWRCGGEELGDVLLALLAQEEGYLQVQGESGGKVRQGKSSGQGGKGSKVGGRKGREGSNGQEFGS 593
            PTTSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVEPWRRGREGGREGGGPEDGMSEGGGKGAVGSNGMEEARVEEGRGGGRRESTTSGGLQAQAMAKESTTSGGLQAQAISKEGGEKGEGQPAAAAAESLDPNPSLPSSTPAVVQAAGTRTTPPTTSRTSSRRATQPAPLLPLSPTACGKPSATEDLSPALPAHVLRDDAEVPSLIILSPTDELSLSPHAVATAARAVATTAAIAKGMVLEEGGREEGGEGGKEGKSRQRQRQRTQRRLASSSPSTGTAKSPIVKARAAPDVLPSLQALLSDPAVLRKQLRPFYRACIQATGHTLNALPARENPRCRLPLSQTPTHHLGLLAVAYLTSDRSLVAREGWGALRRLFRAILGVYGMTRGKVPVWEKGGRGQVGGREEGEGKNAAKLKSVWRCGGEELGDVLLALLAQEEGYLQVQGESGGKVRQGKSSGQGGKGSKVGGRKGREGSNGQEFGS
Sbjct:    1 PTTSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVEPWRRGREGGREGGGPEDGMSEGGGKGAVGSNGMEEARVEEGRGGGRRESTTSGGLQAQAMAKESTTSGGLQAQAISKEGGEKGEGQPAAAAAESLDPNPSLPSSTPAVVQAAGTRTTPPTTSRTSSRRATQPAPLLPLSPTACGKPSATEDLSPALPAHVLRDDAEVPSLIILSPTDELSLSPHAVATAARAVATTAAIAKGMVLEEGGREEGGEGGKEGKSRQRQRQRTQRRLASSSPSTGTAKSPIVKARAAPDVLPSLQALLSDPAVLRKQLRPFYRACIQATGHTLNALPARENPRCRLPLSQTPTHHLGLLAVAYLTSDRSLVAREGWGALRRLFRAILGVYGMTRGKVPVWEKGGRGQVGGREEGEGKNAAKLKSVWRCGGEELGDVLLALLAQEEGYLQVQGESGGKVRQGKSSGQGGKGSKVGGRKGREGSNGQEFGS 593          
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|1056748683|ref|WP_068172018.1| (DNA helicase II [Neokomagataea thailandica])

HSP 1 Score: 96.6709 bits (239), Expect = 3.065e-17
Identity = 54/99 (54.55%), Postives = 63/99 (63.64%), Query Frame = 0
Query:   10 RVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVR 108
            RV L T+HG KG EFD VFL GW+EGVF      PS  +     + AL EERRLAYVALTRARL A +    RRR+    W ++ PSRFI EIP R V+
Sbjct:  557 RVSLMTIHGAKGLEFDTVFLPGWEEGVF------PSQRSLDEGGNNALEEERRLAYVALTRARLRAIVLHAARRRIFAN-WQSSIPSRFIDEIPARYVQ 648          
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|1056761095|ref|WP_068184214.1| (ATP-dependent DNA helicase [Rhizobiales bacterium CCH3-A5])

HSP 1 Score: 94.7449 bits (234), Expect = 1.165e-16
Identity = 69/176 (39.20%), Postives = 87/176 (49.43%), Query Frame = 0
Query:    3 TSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVEPWRRGREGGREGGGPEDGMSEGGGKGAVGSN 178
            T+ GA+ RV + T+HG KG EFD VFL GW+EG+F      PS  A   +    L EERRLA+V LTRAR    + F   RR+  G W ++ PSRFI E+P   V +    S   Q G   S    F R    G      G     W+R +E   + GG   G SE G    +G N
Sbjct:  564 TAEGAA-RVSIMTLHGAKGLEFDTVFLPGWEEGLF------PSQRALDESGRAGLEEERRLAHVGLTRARKRLKLYFASNRRIH-GLWQSSLPSRFIDELPEEHVEVVQAASNYSQGGYGASR---FDRMESFGSSYNTPG-----WQRAQENKAKAGGGSAGFSESGNSFGLGGN 723          
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|750645506|ref|WP_040927371.1| (DNA helicase II [SAR116 cluster alpha proteobacterium HIMB100])

HSP 1 Score: 93.2041 bits (230), Expect = 3.783e-16
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 0
Query:    9 GRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLV 107
            G V L T+H  KG EFD VFL GW++G+F      PS      +    L EERRLAYV LTRAR   CI+F   RR+  G W ++ PSRF+GE+P + +
Sbjct:  546 GEVTLMTLHAAKGLEFDMVFLPGWEDGIF------PSQRTLDESGGAGLEEERRLAYVGLTRARRQVCISFAANRRV-HGLWQSSIPSRFVGELPAKHI 637          
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|356675385|gb|EHI47738.1| (DNA/RNA helicase, superfamily I [SAR116 cluster alpha proteobacterium HIMB100])

HSP 1 Score: 93.2041 bits (230), Expect = 4.274e-16
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 0
Query:    9 GRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLV 107
            G V L T+H  KG EFD VFL GW++G+F      PS      +    L EERRLAYV LTRAR   CI+F   RR+  G W ++ PSRF+GE+P + +
Sbjct:  560 GEVTLMTLHAAKGLEFDMVFLPGWEDGIF------PSQRTLDESGGAGLEEERRLAYVGLTRARRQVCISFAANRRV-HGLWQSSIPSRFVGELPAKHI 651          
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|1003178415|gb|KXV36037.1| (DNA helicase II, partial [Gluconobacter japonicus])

HSP 1 Score: 89.7373 bits (221), Expect = 5.075e-16
Identity = 52/107 (48.60%), Postives = 61/107 (57.01%), Query Frame = 0
Query:    2 TTSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVR 108
            T S     +V L T+HG KG EFD VFL GW+EGVF      PS  +     + AL EERRLAYV LTRARL A +     RR+    W  + PSRFI EIP   V+
Sbjct:  113 TESETTDDKVSLMTLHGSKGLEFDTVFLPGWEEGVF------PSQRSLDEGGNRALEEERRLAYVGLTRARLRAIVVHAASRRIYAN-WQASMPSRFIEEIPSEYVQ 212          
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|497983526|ref|WP_010297682.1| (DNA helicase II [Candidatus Odyssella thessalonicensis])

HSP 1 Score: 92.4337 bits (228), Expect = 6.969e-16
Identity = 51/108 (47.22%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    2 TTSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRL 109
            TTS   S  V L T+H  KG EF+ VFL GW+E +F      P+  A        L EERRLAYV +TRAR  A IT+ H R+   G W  +TPSRFI E+P+  VR+
Sbjct:  540 TTSSLNSDMVNLMTLHAAKGLEFETVFLPGWEESIF------PNTRAMDDNGLEGLEEERRLAYVGITRARREAIITYAHNRKTFQG-WQYSTPSRFIAELPKDHVRI 640          
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|764604891|ref|WP_044427774.1| (DNA helicase II [Skermanella aerolata] >gi|763835599|gb|KJB96049.1| DNA helicase II [Skermanella aerolata KACC 11604])

HSP 1 Score: 91.2781 bits (225), Expect = 1.774e-15
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0
Query:    8 SGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIP 103
            S  V + T+HG KG EFD+VFL GW++G+F      PS  +   T    L EERRLAYV LTRARL A ++    RR+  G+W+T  PSRF+ E+P
Sbjct:  568 SEMVSVMTLHGAKGLEFDYVFLPGWEDGLF------PSQRSMDDTGIAGLEEERRLAYVGLTRARLRAHVSHAANRRM-HGSWVTAIPSRFVSELP 656          
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|780254113|ref|WP_045541405.1| (DNA helicase II [Acetobacter tropicalis] >gi|1003193437|gb|KXV50366.1| DNA helicase II [Acetobacter tropicalis])

HSP 1 Score: 88.5817 bits (218), Expect = 9.629e-15
Identity = 61/139 (43.88%), Postives = 76/139 (54.68%), Query Frame = 0
Query:    9 GRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVE 147
             ++ L T+HG KG EFD VFL GW+EGVF      PS           L EERRLAYV +TRAR +A I  T  RR+    W  + PSRF+ E+P   V  Q  G+ + +RG+  S+ V F    P   R RQD LL E
Sbjct:  543 AKLSLMTLHGAKGLEFDIVFLPGWEEGVF------PSQRTLDEGGLKGLEEERRLAYVGITRARKHALIYHTGSRRIYAN-WQPSMPSRFLDELPEEHVARQNEGATQ-RRGLNLSDSV-FEGGMPLTSRRRQDPLLAE 672          
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|754392665|dbj|GAL96083.1| (DNA helicase II [Acetobacter tropicalis])

HSP 1 Score: 88.5817 bits (218), Expect = 9.722e-15
Identity = 61/139 (43.88%), Postives = 76/139 (54.68%), Query Frame = 0
Query:    9 GRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVE 147
             ++ L T+HG KG EFD VFL GW+EGVF      PS           L EERRLAYV +TRAR +A I  T  RR+    W  + PSRF+ E+P   V  Q  G+ + +RG+  S+ V F    P   R RQD LL E
Sbjct:  565 AKLSLMTLHGAKGLEFDIVFLPGWEEGVF------PSQRTLDEGGLKGLEEERRLAYVGITRARKHALIYHTGSRRIYAN-WQPSMPSRFLDELPEEHVARQNEGATQ-RRGLNLSDSV-FEGGMPLTSRRRQDPLLAE 694          
The following BLAST results are available for this feature:
BLAST of EWM26399.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108416|gb|EWM26399.1|0.000e+0100.00dna helicase ii, partial [Nannochloropsis gaditana... [more]
gi|1056748683|ref|WP_068172018.1|3.065e-1754.55DNA helicase II [Neokomagataea thailandica][more]
gi|1056761095|ref|WP_068184214.1|1.165e-1639.20ATP-dependent DNA helicase [Rhizobiales bacterium ... [more]
gi|750645506|ref|WP_040927371.1|3.783e-1647.47DNA helicase II [SAR116 cluster alpha proteobacter... [more]
gi|356675385|gb|EHI47738.1|4.274e-1647.47DNA/RNA helicase, superfamily I [SAR116 cluster al... [more]
gi|1003178415|gb|KXV36037.1|5.075e-1648.60DNA helicase II, partial [Gluconobacter japonicus][more]
gi|497983526|ref|WP_010297682.1|6.969e-1647.22DNA helicase II [Candidatus Odyssella thessalonice... [more]
gi|764604891|ref|WP_044427774.1|1.774e-1548.96DNA helicase II [Skermanella aerolata] >gi|7638355... [more]
gi|780254113|ref|WP_045541405.1|9.629e-1543.88DNA helicase II [Acetobacter tropicalis] >gi|10031... [more]
gi|754392665|dbj|GAL96083.1|9.722e-1543.88DNA helicase II [Acetobacter tropicalis][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4282rna4282Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications