EWM26399.1, cds4272 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|585108416|gb|EWM26399.1| (dna helicase ii, partial [Nannochloropsis gaditana]) HSP 1 Score: 1165.21 bits (3013), Expect = 0.000e+0 Identity = 593/593 (100.00%), Postives = 593/593 (100.00%), Query Frame = 0
Query: 1 PTTSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVEPWRRGREGGREGGGPEDGMSEGGGKGAVGSNGMEEARVEEGRGGGRRESTTSGGLQAQAMAKESTTSGGLQAQAISKEGGEKGEGQPAAAAAESLDPNPSLPSSTPAVVQAAGTRTTPPTTSRTSSRRATQPAPLLPLSPTACGKPSATEDLSPALPAHVLRDDAEVPSLIILSPTDELSLSPHAVATAARAVATTAAIAKGMVLEEGGREEGGEGGKEGKSRQRQRQRTQRRLASSSPSTGTAKSPIVKARAAPDVLPSLQALLSDPAVLRKQLRPFYRACIQATGHTLNALPARENPRCRLPLSQTPTHHLGLLAVAYLTSDRSLVAREGWGALRRLFRAILGVYGMTRGKVPVWEKGGRGQVGGREEGEGKNAAKLKSVWRCGGEELGDVLLALLAQEEGYLQVQGESGGKVRQGKSSGQGGKGSKVGGRKGREGSNGQEFGS 593
PTTSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVEPWRRGREGGREGGGPEDGMSEGGGKGAVGSNGMEEARVEEGRGGGRRESTTSGGLQAQAMAKESTTSGGLQAQAISKEGGEKGEGQPAAAAAESLDPNPSLPSSTPAVVQAAGTRTTPPTTSRTSSRRATQPAPLLPLSPTACGKPSATEDLSPALPAHVLRDDAEVPSLIILSPTDELSLSPHAVATAARAVATTAAIAKGMVLEEGGREEGGEGGKEGKSRQRQRQRTQRRLASSSPSTGTAKSPIVKARAAPDVLPSLQALLSDPAVLRKQLRPFYRACIQATGHTLNALPARENPRCRLPLSQTPTHHLGLLAVAYLTSDRSLVAREGWGALRRLFRAILGVYGMTRGKVPVWEKGGRGQVGGREEGEGKNAAKLKSVWRCGGEELGDVLLALLAQEEGYLQVQGESGGKVRQGKSSGQGGKGSKVGGRKGREGSNGQEFGS
Sbjct: 1 PTTSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVEPWRRGREGGREGGGPEDGMSEGGGKGAVGSNGMEEARVEEGRGGGRRESTTSGGLQAQAMAKESTTSGGLQAQAISKEGGEKGEGQPAAAAAESLDPNPSLPSSTPAVVQAAGTRTTPPTTSRTSSRRATQPAPLLPLSPTACGKPSATEDLSPALPAHVLRDDAEVPSLIILSPTDELSLSPHAVATAARAVATTAAIAKGMVLEEGGREEGGEGGKEGKSRQRQRQRTQRRLASSSPSTGTAKSPIVKARAAPDVLPSLQALLSDPAVLRKQLRPFYRACIQATGHTLNALPARENPRCRLPLSQTPTHHLGLLAVAYLTSDRSLVAREGWGALRRLFRAILGVYGMTRGKVPVWEKGGRGQVGGREEGEGKNAAKLKSVWRCGGEELGDVLLALLAQEEGYLQVQGESGGKVRQGKSSGQGGKGSKVGGRKGREGSNGQEFGS 593
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|1056748683|ref|WP_068172018.1| (DNA helicase II [Neokomagataea thailandica]) HSP 1 Score: 96.6709 bits (239), Expect = 3.065e-17 Identity = 54/99 (54.55%), Postives = 63/99 (63.64%), Query Frame = 0
Query: 10 RVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVR 108
RV L T+HG KG EFD VFL GW+EGVF PS + + AL EERRLAYVALTRARL A + RRR+ W ++ PSRFI EIP R V+
Sbjct: 557 RVSLMTIHGAKGLEFDTVFLPGWEEGVF------PSQRSLDEGGNNALEEERRLAYVALTRARLRAIVLHAARRRIFAN-WQSSIPSRFIDEIPARYVQ 648
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|1056761095|ref|WP_068184214.1| (ATP-dependent DNA helicase [Rhizobiales bacterium CCH3-A5]) HSP 1 Score: 94.7449 bits (234), Expect = 1.165e-16 Identity = 69/176 (39.20%), Postives = 87/176 (49.43%), Query Frame = 0
Query: 3 TSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVEPWRRGREGGREGGGPEDGMSEGGGKGAVGSN 178
T+ GA+ RV + T+HG KG EFD VFL GW+EG+F PS A + L EERRLA+V LTRAR + F RR+ G W ++ PSRFI E+P V + S Q G S F R G G W+R +E + GG G SE G +G N
Sbjct: 564 TAEGAA-RVSIMTLHGAKGLEFDTVFLPGWEEGLF------PSQRALDESGRAGLEEERRLAHVGLTRARKRLKLYFASNRRIH-GLWQSSLPSRFIDELPEEHVEVVQAASNYSQGGYGASR---FDRMESFGSSYNTPG-----WQRAQENKAKAGGGSAGFSESGNSFGLGGN 723
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|750645506|ref|WP_040927371.1| (DNA helicase II [SAR116 cluster alpha proteobacterium HIMB100]) HSP 1 Score: 93.2041 bits (230), Expect = 3.783e-16 Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 0
Query: 9 GRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLV 107
G V L T+H KG EFD VFL GW++G+F PS + L EERRLAYV LTRAR CI+F RR+ G W ++ PSRF+GE+P + +
Sbjct: 546 GEVTLMTLHAAKGLEFDMVFLPGWEDGIF------PSQRTLDESGGAGLEEERRLAYVGLTRARRQVCISFAANRRV-HGLWQSSIPSRFVGELPAKHI 637
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|356675385|gb|EHI47738.1| (DNA/RNA helicase, superfamily I [SAR116 cluster alpha proteobacterium HIMB100]) HSP 1 Score: 93.2041 bits (230), Expect = 4.274e-16 Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 0
Query: 9 GRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLV 107
G V L T+H KG EFD VFL GW++G+F PS + L EERRLAYV LTRAR CI+F RR+ G W ++ PSRF+GE+P + +
Sbjct: 560 GEVTLMTLHAAKGLEFDMVFLPGWEDGIF------PSQRTLDESGGAGLEEERRLAYVGLTRARRQVCISFAANRRV-HGLWQSSIPSRFVGELPAKHI 651
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|1003178415|gb|KXV36037.1| (DNA helicase II, partial [Gluconobacter japonicus]) HSP 1 Score: 89.7373 bits (221), Expect = 5.075e-16 Identity = 52/107 (48.60%), Postives = 61/107 (57.01%), Query Frame = 0
Query: 2 TTSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVR 108
T S +V L T+HG KG EFD VFL GW+EGVF PS + + AL EERRLAYV LTRARL A + RR+ W + PSRFI EIP V+
Sbjct: 113 TESETTDDKVSLMTLHGSKGLEFDTVFLPGWEEGVF------PSQRSLDEGGNRALEEERRLAYVGLTRARLRAIVVHAASRRIYAN-WQASMPSRFIEEIPSEYVQ 212
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|497983526|ref|WP_010297682.1| (DNA helicase II [Candidatus Odyssella thessalonicensis]) HSP 1 Score: 92.4337 bits (228), Expect = 6.969e-16 Identity = 51/108 (47.22%), Postives = 63/108 (58.33%), Query Frame = 0
Query: 2 TTSPGASGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRL 109
TTS S V L T+H KG EF+ VFL GW+E +F P+ A L EERRLAYV +TRAR A IT+ H R+ G W +TPSRFI E+P+ VR+
Sbjct: 540 TTSSLNSDMVNLMTLHAAKGLEFETVFLPGWEESIF------PNTRAMDDNGLEGLEEERRLAYVGITRARREAIITYAHNRKTFQG-WQYSTPSRFIAELPKDHVRI 640
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|764604891|ref|WP_044427774.1| (DNA helicase II [Skermanella aerolata] >gi|763835599|gb|KJB96049.1| DNA helicase II [Skermanella aerolata KACC 11604]) HSP 1 Score: 91.2781 bits (225), Expect = 1.774e-15 Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0
Query: 8 SGRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIP 103
S V + T+HG KG EFD+VFL GW++G+F PS + T L EERRLAYV LTRARL A ++ RR+ G+W+T PSRF+ E+P
Sbjct: 568 SEMVSVMTLHGAKGLEFDYVFLPGWEDGLF------PSQRSMDDTGIAGLEEERRLAYVGLTRARLRAHVSHAANRRM-HGSWVTAIPSRFVSELP 656
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|780254113|ref|WP_045541405.1| (DNA helicase II [Acetobacter tropicalis] >gi|1003193437|gb|KXV50366.1| DNA helicase II [Acetobacter tropicalis]) HSP 1 Score: 88.5817 bits (218), Expect = 9.629e-15 Identity = 61/139 (43.88%), Postives = 76/139 (54.68%), Query Frame = 0
Query: 9 GRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVE 147
++ L T+HG KG EFD VFL GW+EGVF PS L EERRLAYV +TRAR +A I T RR+ W + PSRF+ E+P V Q G+ + +RG+ S+ V F P R RQD LL E
Sbjct: 543 AKLSLMTLHGAKGLEFDIVFLPGWEEGVF------PSQRTLDEGGLKGLEEERRLAYVGITRARKHALIYHTGSRRIYAN-WQPSMPSRFLDELPEEHVARQNEGATQ-RRGLNLSDSV-FEGGMPLTSRRRQDPLLAE 672
BLAST of EWM26399.1 vs. NCBI_GenBank
Match: gi|754392665|dbj|GAL96083.1| (DNA helicase II [Acetobacter tropicalis]) HSP 1 Score: 88.5817 bits (218), Expect = 9.722e-15 Identity = 61/139 (43.88%), Postives = 76/139 (54.68%), Query Frame = 0
Query: 9 GRVVLSTMHGVKGQEFDFVFLAGWDEGVFPLLPRPPSLPASAPTSSPALAEERRLAYVALTRARLNACITFTHRRRLPGGAWITTTPSRFIGEIPRRLVRLQVLGSARLQRGIRPSNDVDFRRWRPTGVRTRQDGLLVE 147
++ L T+HG KG EFD VFL GW+EGVF PS L EERRLAYV +TRAR +A I T RR+ W + PSRF+ E+P V Q G+ + +RG+ S+ V F P R RQD LL E
Sbjct: 565 AKLSLMTLHGAKGLEFDIVFLPGWEEGVF------PSQRTLDEGGLKGLEEERRLAYVGITRARKHALIYHTGSRRIYAN-WQPSMPSRFLDELPEEHVARQNEGATQ-RRGLNLSDSV-FEGGMPLTSRRRQDPLLAE 694 The following BLAST results are available for this feature:
BLAST of EWM26399.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|