rna4280, rna4280 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4280
Unique Name	rna4280
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	618
Alignment location	CM002463.1:169162..170764 +

Link to JBrowse

Properties


Property Name	Value
Product	ubiquinone menaquinone biosynthesis methyltransferase-like protein
Orig transcript id	gnl\|cribi\|Naga_100697g2.1311.mrna
Orig protein id	gnl\|cribi\|Naga_100697g2.1311
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:169162..170764 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100697g2	gene4125	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4280	rna4280-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26403.1	cds4270	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:169162..170764+
coding sequence from alignment at CM002463.1:169162..170764+

mRNA sequence

>rna4280 ID=rna4280|Name=rna4280|organism=Nannochloropsis gaditana|type=mRNA|length=618bp
CTCCCTACCTCCCTCCCTCCCTCCCTCGCGTCAGGTGGTCTCCCCTACCC
TCCTACGGATGAAAGTCTGGGAGCGCGGGGCGGGGCCCACCTTAGCTTGT
GGGACAGGAGCCTGCGCCTTGACGGTGGCGGCGATTTTGGCGGGAAAAAC
GGACAAAAGGGAGGTGACGGTGAGCCTGCCGGGGGGGGACCTGCAGATCG
AGTGGCGGGAGAGCGACAATCATGTGTATATGACAGGAGCGGCAGAGCTT
GTGTACGGCGGTACAATGAAGACCCTGGGGAGATAAGGGGGAAGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGCAGAGTCTAGAGCCTCACT
CTGGCTGCGTTTTCGTCGGCACTGGAGATGCCCTGTGAAGGATCTTCCCC
TCTCTTTGATCCTCTTTCGCCTCTAAAGTGTTGTTAGCGCTAGCATGGCT
TGGGAGAAAGACGGAAAGAAAAGGAGGGAAAGAGGGAAGGAGGGTGGGAG
GGAGGAAGGGGAGGGAGGGGGAACGAGCCGATAAATTGATACAAGGGATG
GGACGACGACATAAAGGGACGGCCAAACTCGCAAAAAAAGAAGAAAAAAA
GAAAATCAAGGGTCCTGC

protein sequence of rna4280

>rna4280-protein ID=rna4280-protein|Name=rna4280|organism=Nannochloropsis gaditana|type=polypeptide|length=287bp
MAWIAQDETRFRPRAAQASGEQARRPGKGEIDGLLEGKSEEALWPEPLPP
YVKSDFARLDETDDALFYDTPKLVEHIDKAAVRSLSAYYRETFQEVGDRL
YGESGRLLDILDVGASWVSHFPPSYTRAQEADGQDPLGMRCRVAGLGMSA
EELALNPQLTEFTVQDLNKNPRLPYADGSFDLVVSALTIDYLVRPITLCR
EMGRVLRPGGRVCVLFSNRLFFTKAVANWAGKDDVDHVLDVATYLHYANG
ESGSGVGEKMLSKPHAKDISPSPTKGDPLYVVWADRL

mRNA from alignment at CM002463.1:169162..170764+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4280 ID=rna4280|Name=rna4280|organism=Nannochloropsis gaditana|type=mRNA|length=1603bp|location=Sequence derived from alignment at CM002463.1:169162..170764+ (Nannochloropsis gaditana)
ATGGCGTGGATAGCGCAAGACGAGACACGTTTCCGTCCTCGAGCGGCCCA
AGCAAGCGGAGAACAAGCGCGGCGgccgggcaagggggagatTGATGGGT
TGTTGGAGGGCAAAAGCGAGGAGGCCTTGTGGCCCGAGCCCTTACCTCCC
TACGTCAAGTCGGACTTTGCCCGGCTCGACGAGACCGACGATGCGCTTTT
TTACGATACACCTAAGGtacggtgggaaggaaaccGGTGTCTCACCGTTG
CACAACCGGTCGTcacgtgcccgccctccctctcctccttcccctcctcc
ttcccttcgtcccctccccttccctctcaccccccctccagctGGTGGAG
CACATCGACAAAGCAGCCGTGCGGTCCCTGAGCGCCTACTACCGGGAGAC
CTTTCAGGAGGTGGGAGACCGGCTGTATGGCGAGAGCGGCCGGCTCTTGG
ACATCTTGGACGTGGGGGCGTCTTGGTAGGAATGCGCATGCAATCTCCCC
CCTATCCTTTTCAATCCCCTCCACGTTGctgagacagggaggaagggaat
ttATGCTCCCCCATGATTAATTCACCAGCTacctctcccccatcctcccc
ccccacccgcctcctctcacgGGTCGGCACGCAGGGTCAGCCACTTCCCC
CCGTCGTACACAagggcccaggaggcggacggacAAGACCCTCTTGGCAT
GCGGTGCCGCGTGGCCGGACTGGGAATGAGCGCCGAAGAACTGGCTTTGA
ACCCGCAACTGACCGAGTGAGTGCCACAAATCCTTAACCGAATGCTCACT
TGGTGGGGACCAGGTAACGGCCGTGCTACGTGCGACGCGACGACCGTCGA
TGCGGCCTCTTTTTCATCTTCTACCAGTCGTGCGCCCTGTCTCTGGTTca
tgcttcccctcctcggttACCCCCGACCGCCACGCGATACGGGAAGAGGA
TTTGACATGATctagaagggaggacagactcgaccctttccttctcctat
CTGATAACCGTCTCCGCAGGTTTACGGTCCAGGATCTGAACAAAAACCCG
CGCTTGCCGTACGCGGACGGGAGCTTCGACTTGGTCGTCTCCGGTGcgtc
ccccctgcctctctctcttttgaTCCTCTTCGCAGGAaccccctctcttt
cccagTCATTTCTTGGGTTGAACGGACCTCCAAAGCCACCTACCAGGGAC
ATTTTTAATCACAACCACGGTACCTAAGAACCTGCCAGTGTCAGTGCCTG
ActtattttctttcctttcccccgtttCAAACCCGTATTGATCAGCTCTG
ACGATCGACTACCTGGTACGGCCCATCACCCTATGTCGGGAAATGGGCCG
CGTTTTGCGCCCCGGGGGCCGTGTCTGCGTCCTCTTCTCTAACCGCTTGT
TCTTCACCAAGGCGGTGGCCAACTGGGCGGGCAAAGACGACGTCGACCAC
GTCTTGGACGTGGCAACGTATTTGCACTATGCCAACGGGGAAAGTGGGTC
AGGGGTCGGGGAAAAGATGCTTAGCAAACCGCATGCCAAGGACATCAGCC
CCAGTCCCACTAAAGGAGACCCTTTGTACGTAGTATGGGCGGATAGACTA
TAG

Coding sequence (CDS) from alignment at CM002463.1:169162..170764+

>rna4280 ID=rna4280|Name=rna4280|organism=Nannochloropsis gaditana|type=CDS|length=4320bp|location=Sequence derived from alignment at CM002463.1:169162..170764+ (Nannochloropsis gaditana)
ATGGCGTGGATAGCGCAAGACGAGACACGTTTCCGTCCTCGAGCGGCCCA
AGCAAGCGGAGAACAAGCGCGGCGgccgggcaagggggagatTGATGGGT
TGTTGGAGGGCAAAAGCGAGGAGGCCTTGTGGCCCGAGCCCTTACCTCCC
TACGTCAAGTCGGACTTTGCCCGGCTCGACGAGACCGACGATGCGCTTTT
TTACGATACACCTAAGctGGTGGAGCACATCGACAAAGCAGCCGTGCGGT
CCCTGAGCGCCTACTACCGGGAGACCTTTCAGGAGGTGGGAGACCGGCTG
TATGGCGAGAGCGGCCGGCTCTTGGACATCTTGGACGTGGGGGCGTCTTG
GGTCAGCCACTTCCCCCCGTCGTACACAagggcccaggaggcggacggac
AAGACCCTCTTGGCATGCGGTGCCGCGTGGCCGGACTGGGAATGAGCGCC
GAAGAACTGGCTTTGAACCCGCAACTGACCGAGTTTACGGTCCAGGATCT
GAACAAAAACCCGCGCTTGCCGTACGCGGACGGGAGCTTCGACTTGGTCG
TCTCCGCTCTGACGATCGACTACCTGGTACGGCCCATCACCCTATGTCGG
GAAATGGGCCGCGTTTTGCGCCCCGGGGGCCGTGTCTGCGTCCTCTTCTC
TAACCGCTTGTTCTTCACCAAGGCGGTGGCCAACTGGGCGGGCAAAGACG
ACGTCGACCACGTCTTGGACGTGGCAACGTATTTGCACTATGCCAACGGG
GAAAGTGGGTCAGGGGTCGGGGAAAAGATGCTTAGCAAACCGCATGCCAA
GGACATCAGCCCCAGTCCCACTAAAGGAGACCCTTTGTACGTAGTATGGG
CGGATAGACTATAGATGGCGTGGATAGCGCAAGACGAGACACGTTTCCGT
CCTCGAGCGGCCCAAGCAAGCGGAGAACAAGCGCGGCGgccgggcaaggg
ggagatTGATGGGTTGTTGGAGGGCAAAAGCGAGGAGGCCTTGTGGCCCG
AGCCCTTACCTCCCTACGTCAAGTCGGACTTTGCCCGGCTCGACGAGACC
GACGATGCGCTTTTTTACGATACACCTAAGctGGTGGAGCACATCGACAA
AGCAGCCGTGCGGTCCCTGAGCGCCTACTACCGGGAGACCTTTCAGGAGG
TGGGAGACCGGCTGTATGGCGAGAGCGGCCGGCTCTTGGACATCTTGGAC
GTGGGGGCGTCTTGGGTCAGCCACTTCCCCCCGTCGTACACAagggccca
ggaggcggacggacAAGACCCTCTTGGCATGCGGTGCCGCGTGGCCGGAC
TGGGAATGAGCGCCGAAGAACTGGCTTTGAACCCGCAACTGACCGAGTTT
ACGGTCCAGGATCTGAACAAAAACCCGCGCTTGCCGTACGCGGACGGGAG
CTTCGACTTGGTCGTCTCCGCTCTGACGATCGACTACCTGGTACGGCCCA
TCACCCTATGTCGGGAAATGGGCCGCGTTTTGCGCCCCGGGGGCCGTGTC
TGCGTCCTCTTCTCTAACCGCTTGTTCTTCACCAAGGCGGTGGCCAACTG
GGCGGGCAAAGACGACGTCGACCACGTCTTGGACGTGGCAACGTATTTGC
ACTATGCCAACGGGGAAAGTGGGTCAGGGGTCGGGGAAAAGATGCTTAGC
AAACCGCATGCCAAGGACATCAGCCCCAGTCCCACTAAAGGAGACCCTTT
GTACGTAGTATGGGCGGATAGACTATAGATGGCGTGGATAGCGCAAGACG
AGACACGTTTCCGTCCTCGAGCGGCCCAAGCAAGCGGAGAACAAGCGCGG
CGgccgggcaagggggagatTGATGGGTTGTTGGAGGGCAAAAGCGAGGA
GGCCTTGTGGCCCGAGCCCTTACCTCCCTACGTCAAGTCGGACTTTGCCC
GGCTCGACGAGACCGACGATGCGCTTTTTTACGATACACCTAAGctGGTG
GAGCACATCGACAAAGCAGCCGTGCGGTCCCTGAGCGCCTACTACCGGGA
GACCTTTCAGGAGGTGGGAGACCGGCTGTATGGCGAGAGCGGCCGGCTCT
TGGACATCTTGGACGTGGGGGCGTCTTGGGTCAGCCACTTCCCCCCGTCG
TACACAagggcccaggaggcggacggacAAGACCCTCTTGGCATGCGGTG
CCGCGTGGCCGGACTGGGAATGAGCGCCGAAGAACTGGCTTTGAACCCGC
AACTGACCGAGTTTACGGTCCAGGATCTGAACAAAAACCCGCGCTTGCCG
TACGCGGACGGGAGCTTCGACTTGGTCGTCTCCGCTCTGACGATCGACTA
CCTGGTACGGCCCATCACCCTATGTCGGGAAATGGGCCGCGTTTTGCGCC
CCGGGGGCCGTGTCTGCGTCCTCTTCTCTAACCGCTTGTTCTTCACCAAG
GCGGTGGCCAACTGGGCGGGCAAAGACGACGTCGACCACGTCTTGGACGT
GGCAACGTATTTGCACTATGCCAACGGGGAAAGTGGGTCAGGGGTCGGGG
AAAAGATGCTTAGCAAACCGCATGCCAAGGACATCAGCCCCAGTCCCACT
AAAGGAGACCCTTTGTACGTAGTATGGGCGGATAGACTATAGATGGCGTG
GATAGCGCAAGACGAGACACGTTTCCGTCCTCGAGCGGCCCAAGCAAGCG
GAGAACAAGCGCGGCGgccgggcaagggggagatTGATGGGTTGTTGGAG
GGCAAAAGCGAGGAGGCCTTGTGGCCCGAGCCCTTACCTCCCTACGTCAA
GTCGGACTTTGCCCGGCTCGACGAGACCGACGATGCGCTTTTTTACGATA
CACCTAAGctGGTGGAGCACATCGACAAAGCAGCCGTGCGGTCCCTGAGC
GCCTACTACCGGGAGACCTTTCAGGAGGTGGGAGACCGGCTGTATGGCGA
GAGCGGCCGGCTCTTGGACATCTTGGACGTGGGGGCGTCTTGGGTCAGCC
ACTTCCCCCCGTCGTACACAagggcccaggaggcggacggacAAGACCCT
CTTGGCATGCGGTGCCGCGTGGCCGGACTGGGAATGAGCGCCGAAGAACT
GGCTTTGAACCCGCAACTGACCGAGTTTACGGTCCAGGATCTGAACAAAA
ACCCGCGCTTGCCGTACGCGGACGGGAGCTTCGACTTGGTCGTCTCCGCT
CTGACGATCGACTACCTGGTACGGCCCATCACCCTATGTCGGGAAATGGG
CCGCGTTTTGCGCCCCGGGGGCCGTGTCTGCGTCCTCTTCTCTAACCGCT
TGTTCTTCACCAAGGCGGTGGCCAACTGGGCGGGCAAAGACGACGTCGAC
CACGTCTTGGACGTGGCAACGTATTTGCACTATGCCAACGGGGAAAGTGG
GTCAGGGGTCGGGGAAAAGATGCTTAGCAAACCGCATGCCAAGGACATCA
GCCCCAGTCCCACTAAAGGAGACCCTTTGTACGTAGTATGGGCGGATAGA
CTATAGATGGCGTGGATAGCGCAAGACGAGACACGTTTCCGTCCTCGAGC
GGCCCAAGCAAGCGGAGAACAAGCGCGGCGgccgggcaagggggagatTG
ATGGGTTGTTGGAGGGCAAAAGCGAGGAGGCCTTGTGGCCCGAGCCCTTA
CCTCCCTACGTCAAGTCGGACTTTGCCCGGCTCGACGAGACCGACGATGC
GCTTTTTTACGATACACCTAAGctGGTGGAGCACATCGACAAAGCAGCCG
TGCGGTCCCTGAGCGCCTACTACCGGGAGACCTTTCAGGAGGTGGGAGAC
CGGCTGTATGGCGAGAGCGGCCGGCTCTTGGACATCTTGGACGTGGGGGC
GTCTTGGGTCAGCCACTTCCCCCCGTCGTACACAagggcccaggaggcgg
acggacAAGACCCTCTTGGCATGCGGTGCCGCGTGGCCGGACTGGGAATG
AGCGCCGAAGAACTGGCTTTGAACCCGCAACTGACCGAGTTTACGGTCCA
GGATCTGAACAAAAACCCGCGCTTGCCGTACGCGGACGGGAGCTTCGACT
TGGTCGTCTCCGCTCTGACGATCGACTACCTGGTACGGCCCATCACCCTA
TGTCGGGAAATGGGCCGCGTTTTGCGCCCCGGGGGCCGTGTCTGCGTCCT
CTTCTCTAACCGCTTGTTCTTCACCAAGGCGGTGGCCAACTGGGCGGGCA
AAGACGACGTCGACCACGTCTTGGACGTGGCAACGTATTTGCACTATGCC
AACGGGGAAAGTGGGTCAGGGGTCGGGGAAAAGATGCTTAGCAAACCGCA
TGCCAAGGACATCAGCCCCAGTCCCACTAAAGGAGACCCTTTGTACGTAG
TATGGGCGGATAGACTATAG

Synonyms

Publications