rna4278, rna4278 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4278
Unique Name	rna4278
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2211
Alignment location	CM002463.1:162255..163515 +

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Properties


Property Name	Value
Product	ribonucleotide reductase small subunit
Orig transcript id	gnl\|cribi\|Naga_100410g1.2055.mrna
Orig protein id	gnl\|cribi\|Naga_100410g1.2055
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:162255..163515 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100410g1	gene4121	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4278	rna4278-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26406.1	cds4268	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:162255..163515+
coding sequence from alignment at CM002463.1:162255..163515+

mRNA sequence

>rna4278 ID=rna4278|Name=rna4278|organism=Nannochloropsis gaditana|type=mRNA|length=2211bp
AATGATCGGCGCACCGCCCACGCTTATCCAGATCCTTCTCCTGTTGTTCA
TCCTGACATTCACCACCTTCCATTCCATGCCTATGACCACAGTTCCGAAG
AAGATGAAGATCACCGGCCTTGTCACTCTCTTGAGCGTGGCTTCTGCACA
AGCCTTTGTCGCTCCCTCCTTCTTCAAGGCTCCCTCTGCGGGTGCCATGA
CAGGCTCTGCTGCCGTAGCCGAGCCGGTCTGCCCTTCCACGAGCCGTCGC
GGCGTGATGACCATGGCCAAGAAGAGCGTGGGCAGCCTCGCGGACGCCGA
CCTCAAGGGAAAGCGCGTCTTTGTCCGTTGCGACTTGAACGTCCCCCTGG
ACGGAAAGACCATCACGGATGACACCCGCATTCGGGCCTCGGTGCCCACC
ATTGAGTACCTGGCTTCCAAGGGCGCCAAGGTCCTCCTCACGTCCCACTT
GGGCCGACCCAAAGGCAAGGAGGACAAGTTCTCCCTTTCCCCCGTGGCAG
ACCGACTGACGGAATTGCTGGGCAAGAAAGTCGCCTTCGTGGAGGACTGC
ATTGGAGAGGCTGTGTCCACGGCTGTGGCCGGCCTCAAGGAGGGGGACGT
GGCCCTGTTGGAGAACGTGCGGTTCTACCCGGAGGAAGAAAAGAACGTGG
CGGAATTTGCCGAGAAATTGGCGGCAAACGCCGATTTGTACGTAAATGAT
GCCTTTGGGACGGCCCACCGAGCCCATGGTTCCACGGAGGGCGTGGCCAA
ATTCTTGAAACCGGCCGTGGCGGGTTTCCTCTTGCAAAAGGAGCTGGACT
ACCTCGACGGAGCGGTTTCCCAGCCCAAGCGCCCTTTTGCGGCCATCGTG
GGGGGGTCTAAGGTCTCCACCAAGATCACAGTCATCGAGACCCTGATCAA
CAAGGTGGACAAGCTCGTCATCGGCGGTGGCATGGTCTTCACTTTCCTCA
AGGCCCGTGGGCACAACGTCGGAGGTTCCTTGGTCGAAGAAGATAAGCTG
GACCTGGCGCGTAGTCTGGAGGAGCTTGCCAAGCAGAAGGGCGTGAAATT
CATTCTGCCCACGGACGTGGTGATCGCGGACAAATTCGCCCCCGACGCCA
ACAGCAAGGTGGTGGCTTCCACGGAAATCCCCGAAGGCTGGATGGGCCTG
GACAACGGCCCGGAGTCGACCAAGATGATCCAGGCGGAGCTGGCGGATTG
CAAGACCATCATTTGGAACGGGCCAATGGGGGTGTTTGAGTTCGACAAGT
TCGCGGCGGGGACGTCGGCCATCGCAGAGACCTTGGCGGAGCTGACTGCG
AAGGGGGCGACCACCATCGTCGGGGGTGGGGACTCGGTGGCGGCGGTAGA
GAAGGCCGGCTTGGCCGACAAACTCTCCCACGTTTCTACGGGGGGGGGCG
CTTCGTTGGAGCTCTTGGAGGGCAAGGTCCTGCCGGGTGTGGCGGCGCTG
AACGAAGCCTAAGTCTGCGTAGATTCGAATGGTCAGGCGCGAATAAAGGA
CGGAGCTCCAGCGTCCCGGTAGTCTCTCTTTCTTGGGTGTGGGGAGGGTG
GGAGGGGAGAGACGTGCCTAATGGTTGCTCTGACATGGACGTTGCAGCAG
TTACGATACACTCTTTGCGTGAACGTGTCTTAGGGCGGCAGACGGGGTAA
GCGAAGGCGGGAGGCCTGATCTTCCTGCCCTCAATCCACTGAGTCCCACC
CTTGCCTAAGGGGAAGGGTTGATCAGCGTGATTGCACGGCTTCATGTCAT
GTTTGAGATGGGTTTTGCGTGTGTTTGGATGTCCTCAATGTATGTGCTTG
TGTGTGCGGTGGCCTCGGAGGCCCGGAGACACCTGGGAAGTCGCTTTCAA
GGCTGAATTTGGCGCGAAAGCCGAGTCATCCCGGTCAATTGGGCCACAGA
ACAGGAAGGTCAGAGTAGAGGAAAGAACATCACATCTTTGGTTGCGGCAT
AGGCATGTCTGAGAGCTTGGTCCGCTTCGAGGTCCAAGCCTGTGACTGTC
GAGGCAGGAAGCGTCAGGCCTTCGTGAGACCCACATACAAAAGCAGGGTG
CGCCTTGATGCTTTCATTTACTTGGCCGCACCAGCTCCTGCGTCATACAA
TCATCATCGCCTCCTCAATCCACACTGCTACTTTTTCCCACCTTGAATAC
CATCCCAACACTTAGAATCCAGTCTTCCCTCCTCATGACTCTGCCCAATC
CAGTGGTCCCC

protein sequence of rna4278

>rna4278-protein ID=rna4278-protein|Name=rna4278|organism=Nannochloropsis gaditana|type=polypeptide|length=273bp
MDSHPPSFPPLGHASDMTMPTNRDHIYHAEPHQLGQRRRRRHPASSHIML
AASATAALFSFQCAPWTSPSSVPYTRLPFVASAAALPASIDSQTPGPVAP
SFLRRLNVKGGSKGPADVLGTRGRQAGGGEGGREGGPGGGREESAQEKAT
KTPCLPRRVRGGMTRLTLAGMGREDVEEATDREDVRGAEVQATGKETHST
DAPASTSGDEERRLEGDGWVEPICREDPARFVLFPIRHPELWEMYKRHEA
SFWTAEEVDLSQDMEDWRVGREG

mRNA from alignment at CM002463.1:162255..163515+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4278 ID=rna4278|Name=rna4278|organism=Nannochloropsis gaditana|type=mRNA|length=1261bp|location=Sequence derived from alignment at CM002463.1:162255..163515+ (Nannochloropsis gaditana)
TGGTGTCTCTGCAGGCGGTGTAGTGATGACGTTCTTGGCGTGGCAAGTCT
TTTTGCCTCCTGGTGGCCATGGCAAAGAAGTCAACAAGCGACGGCGGGCA
CGCGTCGGGACAAAAACTGGCGCCTTACATCATTAAACcccaccatgtcc
tccccaAAGCTCCTTGCCGGACGCGAGGGTCATTGCCGCGAAGTGGAGTA
CGTGAGATACGTGCCAGCATCGTCCgtagggaaggagcgtgTTTGTTTTC
CCCTGAGCCCCCTCTTTGTcgcgtggaagaagacgaggcatAGTTGTACT
TGCCCCTGAAACGCACAAACCCGAGGTAGTCTCTTTTATATCCCATGCAA
ATGTGACGCCCAGGCACCTGGACACGAGCCCAAGACTTCCATACCATGCG
TGCACTCCTCTCAATCTCTTGTTGTTGGGCTGCAGGGTCCAATGGATTCT
caccccccttcttttccgcctCTCGGCCACGCATCAGACATGACCATGCC
GACAAATCGCGACCACATCTATCATGCAGAGCCGCACCAGCTTGGGCAAA
GGAGACGTCGCCGTCATCCAGCTTCGTCACATATCATGCTGGCCGCTTCA
GCCACGGCTGCCTTGTTCAGTTTCCAGTGCGCACCCTGgacgtccccctc
ctctgtgccCTATACCCGCCTGCCTTTCGTCGCGTCAGCCGCGGCGTTGC
CGGCCTCCATTGATAGCCAAACCCCTGGCCCCGTGGCACCGTCATTTCTC
CGTCGGTTGAAtgtgaagggaggaagcaagggtCCTGCGGACGTGCTGGG
CACGCGGGGGAGGCaagcgggcgggggggagggagggagggagggcgggc
ccgggggagggagggaggaatcggCCCAAGAGAAGGCGACAAAGACCCCA
TGCCTGCCACGCCGGGTGAGGGGTGGGATGACGCGGTTGACCCtggcggg
gatggggagggaagacgtggaggaagcgacagACAGGGAGGATGTGCGGG
GAGCGGAGGTGCAGGCCACAGGGAAAGAGACCCATTCTACGGATGCGCCC
GCCTCGACATCCGGAGACGAAGAAAGACgcctggagggggacgggtgGGT
GGAGCCGATATGTCGCGAGGATCCTGCCCGCTTTGTTCTCTTCCCCATTC
GGCATCCGGAGCTATGGGAAATGTACAAACGCCATGAAGCCAGCTTTtgg
acggcggaggaggtggacttGAGTCAGGACATGGAGGACtggcgggtggg
gagggagggag

Coding sequence (CDS) from alignment at CM002463.1:162255..163515+

>rna4278 ID=rna4278|Name=rna4278|organism=Nannochloropsis gaditana|type=CDS|length=820bp|location=Sequence derived from alignment at CM002463.1:162255..163515+ (Nannochloropsis gaditana)
ATGGATTCTcaccccccttcttttccgcctCTCGGCCACGCATCAGACAT
GACCATGCCGACAAATCGCGACCACATCTATCATGCAGAGCCGCACCAGC
TTGGGCAAAGGAGACGTCGCCGTCATCCAGCTTCGTCACATATCATGCTG
GCCGCTTCAGCCACGGCTGCCTTGTTCAGTTTCCAGTGCGCACCCTGgac
gtccccctcctctgtgccCTATACCCGCCTGCCTTTCGTCGCGTCAGCCG
CGGCGTTGCCGGCCTCCATTGATAGCCAAACCCCTGGCCCCGTGGCACCG
TCATTTCTCCGTCGGTTGAAtgtgaagggaggaagcaagggtCCTGCGGA
CGTGCTGGGCACGCGGGGGAGGCaagcgggcgggggggagggagggaggg
agggcgggcccgggggagggagggaggaatcggCCCAAGAGAAGGCGACA
AAGACCCCATGCCTGCCACGCCGGGTGAGGGGTGGGATGACGCGGTTGAC
CCtggcggggatggggagggaagacgtggaggaagcgacagACAGGGAGG
ATGTGCGGGGAGCGGAGGTGCAGGCCACAGGGAAAGAGACCCATTCTACG
GATGCGCCCGCCTCGACATCCGGAGACGAAGAAAGACgcctggaggggga
cgggtgGGTGGAGCCGATATGTCGCGAGGATCCTGCCCGCTTTGTTCTCT
TCCCCATTCGGCATCCGGAGCTATGGGAAATGTACAAACGCCATGAAGCC
AGCTTTtggacggcggaggaggtggacttGAGTCAGGACATGGAGGACtg
gcgggtggggagggagggag

Synonyms

Publications