EWM26406.1, cds4268 (CDS) Nannochloropsis gaditana

Overview
NameEWM26406.1
Unique Namecds4268
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:162696..163515 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26406.1
Productribonucleotide reductase small subunit
Partialtrue
Orig transcript idgnl|cribi|Naga_100410g1.2055.mrna
GbkeyCDS
End range.
End range163515
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:162696..163515 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009186deoxyribonucleoside diphosphate metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR009078Ferritin-like_SF
IPR000358RNR_small
IPR012348RNR-rel
Homology
[Close]
BLAST of EWM26406.1 vs. NCBI_GenBank
Match: gi|585108429|gb|EWM26406.1| (ribonucleotide reductase small subunit, partial [Nannochloropsis gaditana])

HSP 1 Score: 554.673 bits (1428), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 
Query:    1 MDSHPPSFPPLGHASDMTMPTNRDHIYHAEPHQLGQRRRRRHPASSHIMLAASATAALFSFQCAPWTSPSSVPYTRLPFVASAAALPASIDSQTPGPVAPSFLRRLNVKGGSKGPADVLGTRGRQAGGGEGGREGGPGGGREESAQEKATKTPCLPRRVRGGMTRLTLAGMGREDVEEATDREDVRGAEVQATGKETHSTDAPASTSGDEERRLEGDGWVEPICREDPARFVLFPIRHPELWEMYKRHEASFWTAEEVDLSQDMEDWRVGREG 273
            MDSHPPSFPPLGHASDMTMPTNRDHIYHAEPHQLGQRRRRRHPASSHIMLAASATAALFSFQCAPWTSPSSVPYTRLPFVASAAALPASIDSQTPGPVAPSFLRRLNVKGGSKGPADVLGTRGRQAGGGEGGREGGPGGGREESAQEKATKTPCLPRRVRGGMTRLTLAGMGREDVEEATDREDVRGAEVQATGKETHSTDAPASTSGDEERRLEGDGWVEPICREDPARFVLFPIRHPELWEMYKRHEASFWTAEEVDLSQDMEDWRVGREG
Sbjct:    1 MDSHPPSFPPLGHASDMTMPTNRDHIYHAEPHQLGQRRRRRHPASSHIMLAASATAALFSFQCAPWTSPSSVPYTRLPFVASAAALPASIDSQTPGPVAPSFLRRLNVKGGSKGPADVLGTRGRQAGGGEGGREGGPGGGREESAQEKATKTPCLPRRVRGGMTRLTLAGMGREDVEEATDREDVRGAEVQATGKETHSTDAPASTSGDEERRLEGDGWVEPICREDPARFVLFPIRHPELWEMYKRHEASFWTAEEVDLSQDMEDWRVGREG 273
[Close]
BLAST of EWM26406.1 vs. NCBI_GenBank
Match: gi|518787792|ref|WP_019945081.1| (ribonucleoside-diphosphate reductase [Dyadobacter beijingensis])

HSP 1 Score: 93.5893 bits (231), Expect = 1.551e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0 
Query:  221 EPICREDPARFVLFPIRHPELWEMYKRHEASFWTAEEVDLSQDMEDWRVGREG 273
            EP+  EDP RFVLFPI+H ++WEMYKRHEASFWTAEE+DLSQDM+DW    +G
Sbjct:    9 EPLLTEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWENLNDG 61
[Close]
BLAST of EWM26406.1 vs. NCBI_GenBank
Match: gi|1176370491|ref|WP_082217612.1| (ribonucleoside-diphosphate reductase [Dyadobacter psychrophilus] >gi|1154050594|emb|SKC17667.1| ribonucleoside-diphosphate reductase beta chain [Dyadobacter psychrophilus])

HSP 1 Score: 93.2041 bits (230), Expect = 1.804e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0 
Query:  221 EPICREDPARFVLFPIRHPELWEMYKRHEASFWTAEEVDLSQDMEDWRVGREG 273
            EP+  EDP RFVLFPI+H ++WEMYKRHEASFWTAEE+DLSQDM+DW    +G
Sbjct:    9 EPLLVEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWENLNDG 61
[Close]
BLAST of EWM26406.1 vs. NCBI_GenBank
Match: gi|651724545|ref|WP_026632363.1| (ribonucleoside-diphosphate reductase [Dyadobacter alkalitolerans])

HSP 1 Score: 93.2041 bits (230), Expect = 1.804e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0 
Query:  221 EPICREDPARFVLFPIRHPELWEMYKRHEASFWTAEEVDLSQDMEDWRVGREG 273
            EP+  EDP RFVLFPI+H ++WEMYKRHEASFWTAEE+DLSQDM+DW    +G
Sbjct:    9 EPLLVEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWENLNDG 61
[Close]
BLAST of EWM26406.1 vs. NCBI_GenBank
Match: gi|1095280307|emb|SEJ42766.1| (ribonucleoside-diphosphate reductase beta chain [Dyadobacter sp. SG02])

HSP 1 Score: 93.2041 bits (230), Expect = 2.206e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0 
Query:  221 EPICREDPARFVLFPIRHPELWEMYKRHEASFWTAEEVDLSQDMEDWRVGREG 273
            EP+  EDP RFVLFPI+H ++WEMYKRHEASFWTAEE+DLSQDM+DW    +G
Sbjct:    9 EPLLIEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWENLNDG 61
[Close]
BLAST of EWM26406.1 vs. NCBI_GenBank
Match: gi|506292974|ref|WP_015812749.1| (ribonucleoside-diphosphate reductase [Dyadobacter fermentans] >gi|254949804|gb|ACT94504.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM 18053])

HSP 1 Score: 93.2041 bits (230), Expect = 2.273e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0 
Query:  221 EPICREDPARFVLFPIRHPELWEMYKRHEASFWTAEEVDLSQDMEDWRVGREG 273
            EP+  EDP RFVLFPI+H ++WEMYKRHEASFWTAEE+DLSQDM+DW    +G
Sbjct:    9 EPLLTEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWENLSDG 61
[Close]
BLAST of EWM26406.1 vs. NCBI_GenBank
Match: gi|1113253926|gb|OJV19644.1| (ribonucleoside-diphosphate reductase [Dyadobacter sp. 50-39])

HSP 1 Score: 93.2041 bits (230), Expect = 2.320e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0 
Query:  221 EPICREDPARFVLFPIRHPELWEMYKRHEASFWTAEEVDLSQDMEDWRVGREG 273
            EP+  EDP RFVLFPI+H ++WEMYKRHEASFWTAEE+DLSQDM+DW    +G
Sbjct:    9 EPLLTEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWENLSDG 61
[Close]
BLAST of EWM26406.1 vs. NCBI_GenBank
Match: gi|1087637763|emb|SDG98147.1| (ribonucleoside-diphosphate reductase beta chain [Dyadobacter soli])

HSP 1 Score: 92.8189 bits (229), Expect = 2.539e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0 
Query:  221 EPICREDPARFVLFPIRHPELWEMYKRHEASFWTAEEVDLSQDMEDWRVGREG 273
            EP+  EDP RFVLFPI+H ++WEMYKRHEASFWTAEE+DLSQDM+DW    +G
Sbjct:    9 EPLLTEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWENLSDG 61
[Close]
BLAST of EWM26406.1 vs. NCBI_GenBank
Match: gi|298713498|emb|CBJ27053.1| (Ribonucleoside-diphosphate reductase small chain [Ectocarpus siliculosus])

HSP 1 Score: 94.3597 bits (233), Expect = 2.749e-18
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 0 
Query:  219 WVEPICREDPARFVLFPIRHPELWEMYKRHEASFWTAEEVDLSQDMEDW 267
            +VEPICR DP+RFVLFPI+HPELW+MYK+ +ASFWT EEVDLSQD  DW
Sbjct:  179 FVEPICRADPSRFVLFPIKHPELWDMYKKAKASFWTVEEVDLSQDSRDW 227
[Close]
BLAST of EWM26406.1 vs. NCBI_GenBank
Match: gi|671546338|ref|WP_031529780.1| (ribonucleoside-diphosphate reductase [Dyadobacter crusticola])

HSP 1 Score: 92.8189 bits (229), Expect = 2.923e-18
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0 
Query:  221 EPICREDPARFVLFPIRHPELWEMYKRHEASFWTAEEVDLSQDMEDWRVGREG 273
            EP+  EDP RFVLFPI+H ++WEMYKRHEASFWTAEE+DLSQDM+DW    +G
Sbjct:    9 EPLLIEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWENLSDG 61
The following BLAST results are available for this feature:
BLAST of EWM26406.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108429|gb|EWM26406.1|0.000e+0100.00ribonucleotide reductase small subunit, partial [N... [more]
gi|518787792|ref|WP_019945081.1|1.551e-1871.70ribonucleoside-diphosphate reductase [Dyadobacter ... [more]
gi|1176370491|ref|WP_082217612.1|1.804e-1871.70ribonucleoside-diphosphate reductase [Dyadobacter ... [more]
gi|651724545|ref|WP_026632363.1|1.804e-1871.70ribonucleoside-diphosphate reductase [Dyadobacter ... [more]
gi|1095280307|emb|SEJ42766.1|2.206e-1871.70ribonucleoside-diphosphate reductase beta chain [D... [more]
gi|506292974|ref|WP_015812749.1|2.273e-1871.70ribonucleoside-diphosphate reductase [Dyadobacter ... [more]
gi|1113253926|gb|OJV19644.1|2.320e-1871.70ribonucleoside-diphosphate reductase [Dyadobacter ... [more]
gi|1087637763|emb|SDG98147.1|2.539e-1871.70ribonucleoside-diphosphate reductase beta chain [D... [more]
gi|298713498|emb|CBJ27053.1|2.749e-1877.55Ribonucleoside-diphosphate reductase small chain [... [more]
gi|671546338|ref|WP_031529780.1|2.923e-1871.70ribonucleoside-diphosphate reductase [Dyadobacter ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4278rna4278Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications