|
|
Properties
| Property Name | Value |
|---|
| Product | Ribosome-associated, Iojap |
| Orig transcript id | gnl|cribi|Naga_100879g3.8823.mrna |
| Orig protein id | gnl|cribi|Naga_100879g3.8823 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:145116..147351 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4275 ID=rna4275|Name=rna4275|organism=Nannochloropsis gaditana|type=mRNA|length=1681bp
GCCCATATCCAACAACCCCGGACCCAGGACGCTGCCTCCTTCCCGGCGGC
GTGACTAGCCATCACTCATCCTTCTCGAGCAACTTCTCACATCACCACCG
CAACCACATCCACATATGACTTGACAGCCATGCTGTCATTTTCTCGCACG
CGGACGGCATCACAGAGAAGAATAGACGGGGATATTTCTCCGCCCATTAC
GACCTTCACCACCAGCGTCCTTCTCTTCCTCCTTGCCCTTTATCCCGCAC
CCGAGACCTCCGCCTTCTTCCTGCCCTCACCAATCTGCCAAAGTCCCGCC
AGCTACATTGATAGAACAGGGTCCGCATGGTCGCTTGTCTCGCCTAGACC
ACAGTCTTCCCTCTATAGTTCGGAGAGTAATAATACTCCGCAACGTCCCA
AACAGAAGAAAGGAGGGAGGGAAGGCTACAACAGGAATCGACGACGTGAG
GAGGCACTAGATGGCATGAAGGTCGGCCACCGCTTTGAAATGGGCTACGA
CATCGAGGAGGAAACGGTGCCCCTGGCAGAGGACGAGACGCTGCCCGTGA
TCGAAACCATCGCGTCCGCGGCGGATATGCGGAAGGGCGAAGACGTCTTG
GCCCTCAGGGTCTCTCGCTTGACCACCGTCTCCTCCTTCTTCGTCCTCGT
CTCCGGGAACAGCCGACCGCAAATTCAAGCCATTGCTGGCGCCATCGAAG
AAGACATGCTGGAGAAGCACGGCCTGGAGGTCCGGAACGGTGGGGAGGGC
ACGGCGGACAGCGGGTGGATCCTGCTGGACTATGGGAGCGTGGTGGTGAA
TGTCATGACCCCTGTGGCTCGGAAATTCTACGCGTTGGAGAAGCTGTGGA
AGAATGTGGGTGCCTTGCCTCCCTCCGTCCTTCCCTCCCTCCTCTCCCTC
CTCCTCCCTTCTCTCCCTCCCTCCCGCCCTCTGCCCTTCCCTCCCTTCTT
CTTTCCCTCCTTCCTCCCTCTTTCCTTCCCTCCCCTCCACTCGATCTTGT
ACTCCGGCACCGATTGACGGGCCAACCCCTCCCTCCTCCCTTCCCTTCTT
CCCTTCTTTCCTCCCTCCCTCCCTCCCTCCCTCACCCCTCTTCTTCCCTT
CCGCAGGGCGAGGAGGTGGACCTCTCCCACATCCTTCGACCCAACCTCCC
GCCAGGCTCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGACGGACCCG
GCCCTGACCCCTCCCTCATGGAGGACGCCTTTTGGTCGTAAGGAGGGAGG
GAGGGAGGGAGGGAGGTAGGGAGGTAGGTCGGTCGTCGTTTTCTTTTCTT
TGGATGAGGGGTGGGAAAGAGGGGGAGGGGGAGGAATGGAAGAGAGTGAG
GAGGGAGGCAAAGCGTCGGCGAAACAAGCATTAAAGAAAGAGGGGGAATA
GGGGGAACGAGGCAACATCAGGAAGGGAAGGAAGGAAGCGGAGGAGGCGA
CCATGGAAGTGGCGCCTGGTTGCTTGCACTGAGTCGGTGGTAGGGGGGAT
GCAGGGGGAGGCCGAGGGGGAGGTGCGGGGGGAGGGAGGGCGGGGGACAG
GGCGAGGGGGAGCTCGACGGCATCGCCTGGAAAAGAAGAAAGAAAAGGGA
AGCCGTATCCTGGCTTTTCCCGCGATTTTCTTTGCATCCTTAACTCCGGG
ACTGGCCCCTTTCTTTCCTTCGCTTTCACTC back to topprotein sequence of rna4275 >rna4275-protein ID=rna4275-protein|Name=rna4275|organism=Nannochloropsis gaditana|type=polypeptide|length=286bp
MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPS
PICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGY
NRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADM
RKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLE
VRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNGEEVDLSH
ILRPNLPPGSEGGREGGREGDGPGPDPSLMEDAFWS back to topmRNA from alignment at CM002463.1:145116..147351+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4275 ID=rna4275|Name=rna4275|organism=Nannochloropsis gaditana|type=mRNA|length=2236bp|location=Sequence derived from alignment at CM002463.1:145116..147351+ (Nannochloropsis gaditana)
GCCCATATCCAACAACCCCGGACCCAGGacgctgcctccttcccggcggC
GTGACTAGCCATCACTCATCCTTCTCGAGCAACTTCTCACATCACCACCG
CAACCACATCCACATATGACTTGACAGCCATGCTGTCATTTTCTCGCACG
CGGACGGCATCACAGAGAAGAATAGACGGGGATATTTCTCCGCCCATTAC
GACCTTCACCACCagcgtccttctcttcctccttgccctttaTCCCGCAC
CCGagacctccgccttcttcctgccctcaCCAATCTGCCAAAGTCCCGCC
AGCTACATTGATAGAACAGGGTCCGCATGGTCGCTTGTCTCGCCTAGACC
ACAGGTACGTTAATAACGTCAATAACCTTGCCATAAGGGATGATTCGCCC
TTTCAATCGTGAGGTATCCTATCTTTCCCTCAAAGACACCGTCTCACATC
GTCGTCCTGCACGTTACAGTCTTCCCTCTATAGTTCGGAGAGTAATAATA
CTCCGCAACGTCCCAAacagaagaaaggagggagggaaggctaCAACAGG
AATCGACGACGTGAGGAGGCACTAGATGGCATGAAGGTCGGCCACCGCTT
TGAAATGGgtgagtgaaggagggaagcgtcATGCGTGCATGACAAAGACC
TCTACAAGCGTCGAAACACGATCGAGCAAGCACAAGACTATGCTCGTATT
TGATTGAGAAGCGTGGGGCTTCTCGTCTGGAGCTTACCTGCCTtgctccc
cctttccctcctttccattctgtctcaccctcctcaccctccttcctctc
tcaggCTACGAcatcgaggaggaaacggtgCCCCTGGCAGAGGACGAGAC
GCTGCCCGTGATCGAAACCATCGCGTCCGCGGCGGATATGCGGAAGGGCG
AAGACGTCTTGGCCCTCAGGGTCTCTCGCTTGaccaccgtctcctccttc
ttcgtcctcgtctccggGAACAGCCGACCGCAAATTCAAGCCATTGCTGG
TATGTCCCTGGTGTGCCGTGCTCCATACGACGCTGCCTTCCGTTTGTATT
CGTCTGCTCTCCCTaccttgcctttctcccaccctccctcgtgcgGCACG
CGACCTGGACGaactccgccctccctccctccctcccttcctccctccat
ccctccctccctccctcctctctccctccctccctccctccctccctccc
tcctctctccctcgctccctccctccctcccccccactcaCAGGCGCCAT
CGAAGAAGACATGCTGGAGAAGCACGGCCTGGAGGTCCGGAACGGTGGGG
AGGGCACGGCGGACAGCGGGTGGATCCTGCTGGACTATGGGAGCGTGGTG
GTGAATGTCATGACCCCTGTGGCTCGGAAATTCTACGCGTTGGAGAAGCT
GTGGAAGAATGTGGgtgccttgcctccctccgtccttccctccctcctct
ccctcctcctcccttctctccctccctcccgccctctgcccttccctccc
ttcttctttccctccttcctccctctttccttccctcccctccactcgAT
CTTGTACTCCGGCACCGATTGACGggccaacccctccctcctcccttccc
ttcttcccttctttcctccctccctccctccctccctcacccctcttctt
cccttccgcagggcgaggaggtggacctCTCCCACATCCTTCGACCCAAC
CTCCCGCCAggctcggagggagggagggagggagggagggagggagacgg
accCGGCcctgacccctccctcatggAGGACGCCTTTTGGtcgtaaggag
ggagggagggagggagggaggtagggaggtaGGTCGGTCGtcgttttctt
ttctttggatgaggggtgggaaagagggggagggggaggaatggaagaga
gtgaggagggaggcaaagcgTCGGCGAAACAAGCAttaaagaaagagggg
gaatAGGGGGAACGAGGCAACatcaggaagggaaggaaggaagcggagga
ggcgaccatgGAAGTGGCGCCTGGTTGCTTGCACTGAGTCGGTGGTAGGG
GGGatgcagggggaggccgagggggaggtgcggggggagggagggcgggg
gacagggcgagggggagctCGACGGCATCGcctggaaaagaagaaagaaa
agggaagccgTATCCTGGCTTTTCCCGCGATTTTCTTTGCATCCTTAACT
CCGGGACtggcccctttctttccttcgctttcactc back to topCoding sequence (CDS) from alignment at CM002463.1:145116..147351+ >rna4275 ID=rna4275|Name=rna4275|organism=Nannochloropsis gaditana|type=CDS|length=4305bp|location=Sequence derived from alignment at CM002463.1:145116..147351+ (Nannochloropsis gaditana)
ATGCTGTCATTTTCTCGCACGCGGACGGCATCACAGAGAAGAATAGACGG
GGATATTTCTCCGCCCATTACGACCTTCACCACCagcgtccttctcttcc
tccttgccctttaTCCCGCACCCGagacctccgccttcttcctgccctca
CCAATCTGCCAAAGTCCCGCCAGCTACATTGATAGAACAGGGTCCGCATG
GTCGCTTGTCTCGCCTAGACCACAGTCTTCCCTCTATAGTTCGGAGAGTA
ATAATACTCCGCAACGTCCCAAacagaagaaaggagggagggaaggctaC
AACAGGAATCGACGACGTGAGGAGGCACTAGATGGCATGAAGGTCGGCCA
CCGCTTTGAAATGGgCTACGAcatcgaggaggaaacggtgCCCCTGGCAG
AGGACGAGACGCTGCCCGTGATCGAAACCATCGCGTCCGCGGCGGATATG
CGGAAGGGCGAAGACGTCTTGGCCCTCAGGGTCTCTCGCTTGaccaccgt
ctcctccttcttcgtcctcgtctccggGAACAGCCGACCGCAAATTCAAG
CCATTGCTGGCGCCATCGAAGAAGACATGCTGGAGAAGCACGGCCTGGAG
GTCCGGAACGGTGGGGAGGGCACGGCGGACAGCGGGTGGATCCTGCTGGA
CTATGGGAGCGTGGTGGTGAATGTCATGACCCCTGTGGCTCGGAAATTCT
ACGCGTTGGAGAAGCTGTGGAAGAATggcgaggaggtggacctCTCCCAC
ATCCTTCGACCCAACCTCCCGCCAggctcggagggagggagggagggagg
gagggagggagacggaccCGGCcctgacccctccctcatggAGGACGCCT
TTTGGtcgtaaATGCTGTCATTTTCTCGCACGCGGACGGCATCACAGAGA
AGAATAGACGGGGATATTTCTCCGCCCATTACGACCTTCACCACCagcgt
ccttctcttcctccttgccctttaTCCCGCACCCGagacctccgccttct
tcctgccctcaCCAATCTGCCAAAGTCCCGCCAGCTACATTGATAGAACA
GGGTCCGCATGGTCGCTTGTCTCGCCTAGACCACAGTCTTCCCTCTATAG
TTCGGAGAGTAATAATACTCCGCAACGTCCCAAacagaagaaaggaggga
gggaaggctaCAACAGGAATCGACGACGTGAGGAGGCACTAGATGGCATG
AAGGTCGGCCACCGCTTTGAAATGGgCTACGAcatcgaggaggaaacggt
gCCCCTGGCAGAGGACGAGACGCTGCCCGTGATCGAAACCATCGCGTCCG
CGGCGGATATGCGGAAGGGCGAAGACGTCTTGGCCCTCAGGGTCTCTCGC
TTGaccaccgtctcctccttcttcgtcctcgtctccggGAACAGCCGACC
GCAAATTCAAGCCATTGCTGGCGCCATCGAAGAAGACATGCTGGAGAAGC
ACGGCCTGGAGGTCCGGAACGGTGGGGAGGGCACGGCGGACAGCGGGTGG
ATCCTGCTGGACTATGGGAGCGTGGTGGTGAATGTCATGACCCCTGTGGC
TCGGAAATTCTACGCGTTGGAGAAGCTGTGGAAGAATggcgaggaggtgg
acctCTCCCACATCCTTCGACCCAACCTCCCGCCAggctcggagggaggg
agggagggagggagggagggagacggaccCGGCcctgacccctccctcat
ggAGGACGCCTTTTGGtcgtaaATGCTGTCATTTTCTCGCACGCGGACGG
CATCACAGAGAAGAATAGACGGGGATATTTCTCCGCCCATTACGACCTTC
ACCACCagcgtccttctcttcctccttgccctttaTCCCGCACCCGagac
ctccgccttcttcctgccctcaCCAATCTGCCAAAGTCCCGCCAGCTACA
TTGATAGAACAGGGTCCGCATGGTCGCTTGTCTCGCCTAGACCACAGTCT
TCCCTCTATAGTTCGGAGAGTAATAATACTCCGCAACGTCCCAAacagaa
gaaaggagggagggaaggctaCAACAGGAATCGACGACGTGAGGAGGCAC
TAGATGGCATGAAGGTCGGCCACCGCTTTGAAATGGgCTACGAcatcgag
gaggaaacggtgCCCCTGGCAGAGGACGAGACGCTGCCCGTGATCGAAAC
CATCGCGTCCGCGGCGGATATGCGGAAGGGCGAAGACGTCTTGGCCCTCA
GGGTCTCTCGCTTGaccaccgtctcctccttcttcgtcctcgtctccggG
AACAGCCGACCGCAAATTCAAGCCATTGCTGGCGCCATCGAAGAAGACAT
GCTGGAGAAGCACGGCCTGGAGGTCCGGAACGGTGGGGAGGGCACGGCGG
ACAGCGGGTGGATCCTGCTGGACTATGGGAGCGTGGTGGTGAATGTCATG
ACCCCTGTGGCTCGGAAATTCTACGCGTTGGAGAAGCTGTGGAAGAATgg
cgaggaggtggacctCTCCCACATCCTTCGACCCAACCTCCCGCCAggct
cggagggagggagggagggagggagggagggagacggaccCGGCcctgac
ccctccctcatggAGGACGCCTTTTGGtcgtaaATGCTGTCATTTTCTCG
CACGCGGACGGCATCACAGAGAAGAATAGACGGGGATATTTCTCCGCCCA
TTACGACCTTCACCACCagcgtccttctcttcctccttgccctttaTCCC
GCACCCGagacctccgccttcttcctgccctcaCCAATCTGCCAAAGTCC
CGCCAGCTACATTGATAGAACAGGGTCCGCATGGTCGCTTGTCTCGCCTA
GACCACAGTCTTCCCTCTATAGTTCGGAGAGTAATAATACTCCGCAACGT
CCCAAacagaagaaaggagggagggaaggctaCAACAGGAATCGACGACG
TGAGGAGGCACTAGATGGCATGAAGGTCGGCCACCGCTTTGAAATGGgCT
ACGAcatcgaggaggaaacggtgCCCCTGGCAGAGGACGAGACGCTGCCC
GTGATCGAAACCATCGCGTCCGCGGCGGATATGCGGAAGGGCGAAGACGT
CTTGGCCCTCAGGGTCTCTCGCTTGaccaccgtctcctccttcttcgtcc
tcgtctccggGAACAGCCGACCGCAAATTCAAGCCATTGCTGGCGCCATC
GAAGAAGACATGCTGGAGAAGCACGGCCTGGAGGTCCGGAACGGTGGGGA
GGGCACGGCGGACAGCGGGTGGATCCTGCTGGACTATGGGAGCGTGGTGG
TGAATGTCATGACCCCTGTGGCTCGGAAATTCTACGCGTTGGAGAAGCTG
TGGAAGAATggcgaggaggtggacctCTCCCACATCCTTCGACCCAACCT
CCCGCCAggctcggagggagggagggagggagggagggagggagacggac
cCGGCcctgacccctccctcatggAGGACGCCTTTTGGtcgtaaATGCTG
TCATTTTCTCGCACGCGGACGGCATCACAGAGAAGAATAGACGGGGATAT
TTCTCCGCCCATTACGACCTTCACCACCagcgtccttctcttcctccttg
ccctttaTCCCGCACCCGagacctccgccttcttcctgccctcaCCAATC
TGCCAAAGTCCCGCCAGCTACATTGATAGAACAGGGTCCGCATGGTCGCT
TGTCTCGCCTAGACCACAGTCTTCCCTCTATAGTTCGGAGAGTAATAATA
CTCCGCAACGTCCCAAacagaagaaaggagggagggaaggctaCAACAGG
AATCGACGACGTGAGGAGGCACTAGATGGCATGAAGGTCGGCCACCGCTT
TGAAATGGgCTACGAcatcgaggaggaaacggtgCCCCTGGCAGAGGACG
AGACGCTGCCCGTGATCGAAACCATCGCGTCCGCGGCGGATATGCGGAAG
GGCGAAGACGTCTTGGCCCTCAGGGTCTCTCGCTTGaccaccgtctcctc
cttcttcgtcctcgtctccggGAACAGCCGACCGCAAATTCAAGCCATTG
CTGGCGCCATCGAAGAAGACATGCTGGAGAAGCACGGCCTGGAGGTCCGG
AACGGTGGGGAGGGCACGGCGGACAGCGGGTGGATCCTGCTGGACTATGG
GAGCGTGGTGGTGAATGTCATGACCCCTGTGGCTCGGAAATTCTACGCGT
TGGAGAAGCTGTGGAAGAATggcgaggaggtggacctCTCCCACATCCTT
CGACCCAACCTCCCGCCAggctcggagggagggagggagggagggaggga
gggagacggaccCGGCcctgacccctccctcatggAGGACGCCTTTTGGt
cgtaa back to top
|