EWM26409.1, cds4265 (CDS) Nannochloropsis gaditana

Overview
NameEWM26409.1
Unique Namecds4265
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:145245..145469 +
Alignment locationCM002463.1:145585..145723 +
Alignment locationCM002463.1:145920..146114 +
Alignment locationCM002463.1:146359..146525 +
Alignment locationCM002463.1:146777..146911 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26409.1
ProductRibosome-associated, Iojap
Orig transcript idgnl|cribi|Naga_100879g3.8823.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:145245..145469 +
CM002463.1supercontigCM002463.1:145585..145723 +
CM002463.1supercontigCM002463.1:145920..146114 +
CM002463.1supercontigCM002463.1:146359..146525 +
CM002463.1supercontigCM002463.1:146777..146911 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR004394Iojap/RsfS/C7orf30
IPR025656Oligomer_dom
Homology
BLAST of EWM26409.1 vs. NCBI_GenBank
Match: gi|585108435|gb|EWM26409.1| (Ribosome-associated, Iojap [Nannochloropsis gaditana])

HSP 1 Score: 582.793 bits (1501), Expect = 0.000e+0
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
Query:    1 MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNGEEVDLSHILRPNLPPGSEGGREGGREGDGPGPDPSLMEDAFWS 286
            MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNGEEVDLSHILRPNLPPGSEGGREGGREGDGPGPDPSLMEDAFWS
Sbjct:    1 MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNGEEVDLSHILRPNLPPGSEGGREGGREGDGPGPDPSLMEDAFWS 286          
BLAST of EWM26409.1 vs. NCBI_GenBank
Match: gi|585108436|gb|EWM26410.1| (Ribosome-associated, Iojap [Nannochloropsis gaditana])

HSP 1 Score: 494.197 bits (1271), Expect = 4.034e-175
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
Query:    1 MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKN 242
            MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKN
Sbjct:    1 MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKN 242          
BLAST of EWM26409.1 vs. NCBI_GenBank
Match: gi|553193987|ref|XP_005855870.1| (iojap-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293195|gb|EKU20495.1| iojap-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 374.4 bits (960), Expect = 1.883e-129
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 0
Query:    1 MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIA 186
            MLSFSRTRTASQRRIDGDISPP TTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIA
Sbjct:    1 MLSFSRTRTASQRRIDGDISPPNTTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIA 186          
BLAST of EWM26409.1 vs. NCBI_GenBank
Match: gi|551674566|ref|XP_005840038.1| (hypothetical protein GUITHDRAFT_161153 [Guillardia theta CCMP2712] >gi|428184202|gb|EKX53058.1| hypothetical protein GUITHDRAFT_161153 [Guillardia theta CCMP2712])

HSP 1 Score: 134.806 bits (338), Expect = 5.660e-35
Identity = 65/125 (52.00%), Postives = 87/125 (69.60%), Query Frame = 0
Query:  131 PLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNGEEVDLSHILRPN 255
            PLAED +LP+++ I  A D RK E + A RVS LT  + FF+   G+SRP +QAIA  +E+ M EK+G E++   +G  DSGWILLDYG V+VN+MT  AR+FY LE+ W+NGE V L  ++ PN
Sbjct:   58 PLAEDPSLPLVQDIIRAMDERKAESIWAARVSHLTYSTEFFINCQGSSRPMLQAIAANVEDIMNEKYGREIK--WQGNPDSGWILLDYGEVIVNIMTAAAREFYDLEEHWQNGELVPLEDLVTPN 180          
BLAST of EWM26409.1 vs. NCBI_GenBank
Match: gi|299472319|emb|CBN77507.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 129.798 bits (325), Expect = 1.131e-33
Identity = 61/126 (48.41%), Postives = 86/126 (68.25%), Query Frame = 0
Query:  132 LAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNGEEVDLSHILRPNLP 257
            + +D TLP + T   AAD RK  +++A+RV+ LT ++ F V++ GNSRPQ QAIA  IEE M E H  + +   +G  +SGWILLDYG ++V++MTP +R +Y LE  W NGE V L  +L+PN+P
Sbjct:   32 MEDDPTLPEVLTAVKAADERKAGNIVAIRVATLTVMTEFMVVLEGNSRPQNQAIAQNIEEKMEEMH--QRKTKSQGAPESGWILLDYGDIIVHIMTPKSRSYYDLESFWSNGERVPLDGVLKPNVP 155          
BLAST of EWM26409.1 vs. NCBI_GenBank
Match: gi|1210524500|dbj|GAX16758.1| (hypothetical protein FisN_21Hh205 [Fistulifera solaris])

HSP 1 Score: 132.109 bits (331), Expect = 1.193e-33
Identity = 98/267 (36.70%), Postives = 143/267 (53.56%), Query Frame = 0
Query:   29 SVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRRE--EALDGMKVGHRFEMGYDIEEETVPLAEDETL-PVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGG----EGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKN--GEEVDLSHILRPNLPPGSEGGREGGREGDGPGPDPSLMEDAFWS 286
            SVLL L+ LY + E  A+ L            DR      L    P SS     S+N P+  K   G  E  + + + +  E +D ++      M   + ++   +  DETL P++E I  AAD RK ED++AL+V+ ++T++S  V+VSGNSRPQ QAIA AI  D+ ++ G   R GG    EG+A+SGWILLDYGSV+V++MTP +R +Y +E  WK   G   ++ ++L PN   G           D    +P+  +D FWS
Sbjct:    4 SVLLQLVFLYASDEVEAWSLA-----------DR------LTGRVPSSSRNGHRSHNYPRYGKVDDGNSELQSTSTKHDKREMIDFIQ----EPMSSTVGDDKYSINTDETLLPLLECIVKAADGRKAEDIVALQVNHVSTLTSVLVIVSGNSRPQNQAIAAAITRDVQDELGQ--RPGGNGVPEGSAESGWILLDYGSVMVHIMTPKSRLYYNVEGQWKEKGGVATNIDYLLIPNQVVGRR---------DDAKMEPAPEDDPFWS 238          
BLAST of EWM26409.1 vs. NCBI_GenBank
Match: gi|1072227598|gb|OEU12337.1| (DUF143-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 129.798 bits (325), Expect = 2.159e-33
Identity = 77/168 (45.83%), Postives = 109/168 (64.88%), Query Frame = 0
Query:  126 EEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGG--EGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKN--GEEVDLSHILRPNLPPG--SEGGREGGREGD-GPGPDPSLMEDAFWS 286
            +E  VP  +DE   ++  I   AD RK ++++A+RVS+++TV+SF V+V+GNSRPQ QAIA  I++D+ E+  L     G  EG+ADSGW LLDYGSV+V+VMTP +R FY +E  WK+  GE +D++  + PN P     +  +EG  EG+ G     S  ED FWS
Sbjct:   17 DEILVPPEQDELAELVRCIVRGADGRKADNIVAMRVSKISTVTSFVVIVTGNSRPQNQAIAAVIKDDVNEEFALLPGATGVPEGSADSGWTLLDYGSVMVHVMTPKSRLFYNIEGKWKDQGGEIMDITAAILPNAPTAEQQKQQQEGKSEGESGTMQGLSEEEDPFWS 184          
BLAST of EWM26409.1 vs. NCBI_GenBank
Match: gi|873222368|emb|CEM31303.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 125.176 bits (313), Expect = 1.608e-31
Identity = 66/161 (40.99%), Postives = 99/161 (61.49%), Query Frame = 0
Query:  131 PLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKN--GEEVDLSHILRPNLPPGSEGGRE---GGREGDGPGPDPSLMEDAFWS 286
            P++ D  +P I TIA A D+ K + + A+RV   + V+ F VL+ G+S PQ +AIA AIE+ M  KHG+E +   +G+ D GW++LDYGS++VN+MTP  R++Y +E  W+    E V L+H+LR ++  G   GR+   GG     P  +  +  D FWS
Sbjct:   33 PVSHDPQVPTIYTIAEAGDLHKADGISAMRVKYCSDVTDFIVLMHGHSVPQNKAIANAIEDAMARKHGIEAKR-RDGSVDGGWLVLDYGSILVNIMTPKKREYYNMEGHWRKQGSEPVPLAHVLRSDVREGYSTGRDVTYGGGNRQQPWEEEEV--DPFWS 190          
BLAST of EWM26409.1 vs. NCBI_GenBank
Match: gi|1210530962|dbj|GAX10502.1| (hypothetical protein FisN_21Lh205 [Fistulifera solaris])

HSP 1 Score: 123.635 bits (309), Expect = 2.012e-30
Identity = 73/173 (42.20%), Postives = 108/173 (62.43%), Query Frame = 0
Query:  121 MGYDIEEETVPLAEDETL-PVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGG----EGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKN--GEEVDLSHILRPNLPPGSEGGREGGREGDGPGPDPSLMEDAFWS 286
            M   + ++   +  DETL P++E I  AAD RK ED++AL+V+ ++T++S  V+VSGNSRPQ QAIA AI  D+ ++ G   R GG    EG+A+SGWILLDYG+V+V++MTP +R +Y +E  WK   G  +++ ++L PN   G           D    +P+  +D FWS
Sbjct:   77 MSSTVGDDEYSINTDETLLPLLECIVKAADGRKAEDIVALQVNHVSTLTSVLVIVSGNSRPQNQAIAAAITRDVQDELGQ--RPGGNGVPEGSAESGWILLDYGNVMVHIMTPKSRLYYNVEGQWKEKGGVAMNIDYLLIPNQVIGKR---------DDAKMEPAPEDDPFWS 238          
BLAST of EWM26409.1 vs. NCBI_GenBank
Match: gi|224006702|ref|XP_002292311.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220971953|gb|EED90286.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 107.842 bits (268), Expect = 5.523e-26
Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query:  144 IASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKH-GLEVRNGG--EGTADSGWILLDYGSVVVNVMTPVARKFYALEKLW 240
            I  +ADMRK  D++ALRV+  T++++F V+VSG SRPQ QAIA +I +D+ EK+ G      G  EG+ADSGWILLDYG V+V+VMTP +R FY +E  W
Sbjct:    1 IVHSADMRKASDIVALRVTSCTSLTNFVVIVSGTSRPQNQAIANSIAKDVEEKYDGKRCLGKGVPEGSADSGWILLDYGEVMVHVMTPKSRLFYDIEGQW 100          
The following BLAST results are available for this feature:
BLAST of EWM26409.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108435|gb|EWM26409.1|0.000e+0100.00Ribosome-associated, Iojap [Nannochloropsis gadita... [more]
gi|585108436|gb|EWM26410.1|4.034e-175100.00Ribosome-associated, Iojap [Nannochloropsis gadita... [more]
gi|553193987|ref|XP_005855870.1|1.883e-12999.46iojap-like protein, partial [Nannochloropsis gadit... [more]
gi|551674566|ref|XP_005840038.1|5.660e-3552.00hypothetical protein GUITHDRAFT_161153 [Guillardia... [more]
gi|299472319|emb|CBN77507.1|1.131e-3348.41conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210524500|dbj|GAX16758.1|1.193e-3336.70hypothetical protein FisN_21Hh205 [Fistulifera sol... [more]
gi|1072227598|gb|OEU12337.1|2.159e-3345.83DUF143-domain-containing protein [Fragilariopsis c... [more]
gi|873222368|emb|CEM31303.1|1.608e-3140.99unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210530962|dbj|GAX10502.1|2.012e-3042.20hypothetical protein FisN_21Lh205 [Fistulifera sol... [more]
gi|224006702|ref|XP_002292311.1|5.523e-2655.00predicted protein, partial [Thalassiosira pseudona... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4275rna4275Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications