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Properties
| Property Name | Value |
|---|
| Product | Ribosome-associated, Iojap |
| Orig transcript id | gnl|cribi|Naga_100879g3.8824.mrna |
| Orig protein id | gnl|cribi|Naga_100879g3.8824 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:145116..147351 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4274 ID=rna4274|Name=rna4274|organism=Nannochloropsis gaditana|type=mRNA|length=450bp
ATGGCCATGTACTTCACCATCATTAAAATCCAGCACAGCTTTATAGCTAC
CATATATCATGGAGTGAAGCGAAAAATTCCATTGTCTCCTACGACCTGGA
GCGCGACAGCGTCACGCATGCTTCGGAGTGCTACTCTATCTCGACGTTCT
ATCAGCTCGCCTTTGACTTTCAGCTTTATCATAACAAGAGACTTGAGGGT
GTGGAATCATATGGCCAGAAATATTGTTGAAAAGATGTGTTCTTGCAGGG
GGAAAGGCCTTATGCACTTCATCCCCGGTAAGAATTTCCCGCATAACATT
TACAAGATCTTATCTTCACCTAAGCGGACTAAGATCAACCTGTTAATGGC
TTTGCTTACGGACTTGTGTGCTGGATATCCAATTCATTTTTCAGGATCAC
CGACGAACAAATTTCTCGACGACTGGCAAGATATTGTCTTTTTTAAATAA back to topprotein sequence of rna4274 >rna4274-protein ID=rna4274-protein|Name=rna4274|organism=Nannochloropsis gaditana|type=polypeptide|length=295bp
MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPS
PICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGY
NRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADM
RKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLE
VRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNVGALPPSV
LPSLLSLLLPSLPPSRPLPFPPFFFPSFLPLSFPPLHSILYSGTD back to topmRNA from alignment at CM002463.1:145116..147351+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4274 ID=rna4274|Name=rna4274|organism=Nannochloropsis gaditana|type=mRNA|length=2236bp|location=Sequence derived from alignment at CM002463.1:145116..147351+ (Nannochloropsis gaditana)
GCCCATATCCAACAACCCCGGACCCAGGacgctgcctccttcccggcggC
GTGACTAGCCATCACTCATCCTTCTCGAGCAACTTCTCACATCACCACCG
CAACCACATCCACATATGACTTGACAGCCATGCTGTCATTTTCTCGCACG
CGGACGGCATCACAGAGAAGAATAGACGGGGATATTTCTCCGCCCATTAC
GACCTTCACCACCagcgtccttctcttcctccttgccctttaTCCCGCAC
CCGagacctccgccttcttcctgccctcaCCAATCTGCCAAAGTCCCGCC
AGCTACATTGATAGAACAGGGTCCGCATGGTCGCTTGTCTCGCCTAGACC
ACAGGTACGTTAATAACGTCAATAACCTTGCCATAAGGGATGATTCGCCC
TTTCAATCGTGAGGTATCCTATCTTTCCCTCAAAGACACCGTCTCACATC
GTCGTCCTGCACGTTACAGTCTTCCCTCTATAGTTCGGAGAGTAATAATA
CTCCGCAACGTCCCAAacagaagaaaggagggagggaaggctaCAACAGG
AATCGACGACGTGAGGAGGCACTAGATGGCATGAAGGTCGGCCACCGCTT
TGAAATGGgtgagtgaaggagggaagcgtcATGCGTGCATGACAAAGACC
TCTACAAGCGTCGAAACACGATCGAGCAAGCACAAGACTATGCTCGTATT
TGATTGAGAAGCGTGGGGCTTCTCGTCTGGAGCTTACCTGCCTtgctccc
cctttccctcctttccattctgtctcaccctcctcaccctccttcctctc
tcaggCTACGAcatcgaggaggaaacggtgCCCCTGGCAGAGGACGAGAC
GCTGCCCGTGATCGAAACCATCGCGTCCGCGGCGGATATGCGGAAGGGCG
AAGACGTCTTGGCCCTCAGGGTCTCTCGCTTGaccaccgtctcctccttc
ttcgtcctcgtctccggGAACAGCCGACCGCAAATTCAAGCCATTGCTGG
TATGTCCCTGGTGTGCCGTGCTCCATACGACGCTGCCTTCCGTTTGTATT
CGTCTGCTCTCCCTaccttgcctttctcccaccctccctcgtgcgGCACG
CGACCTGGACGaactccgccctccctccctccctcccttcctccctccat
ccctccctccctccctcctctctccctccctccctccctccctccctccc
tcctctctccctcgctccctccctccctcccccccactcaCAGGCGCCAT
CGAAGAAGACATGCTGGAGAAGCACGGCCTGGAGGTCCGGAACGGTGGGG
AGGGCACGGCGGACAGCGGGTGGATCCTGCTGGACTATGGGAGCGTGGTG
GTGAATGTCATGACCCCTGTGGCTCGGAAATTCTACGCGTTGGAGAAGCT
GTGGAAGAATGTGGgtgccttgcctccctccgtccttccctccctcctct
ccctcctcctcccttctctccctccctcccgccctctgcccttccctccc
ttcttctttccctccttcctccctctttccttccctcccctccactcgAT
CTTGTACTCCGGCACCGATTGACGggccaacccctccctcctcccttccc
ttcttcccttctttcctccctccctccctccctccctcacccctcttctt
cccttccgcagggcgaggaggtggacctCTCCCACATCCTTCGACCCAAC
CTCCCGCCAggctcggagggagggagggagggagggagggagggagacgg
accCGGCcctgacccctccctcatggAGGACGCCTTTTGGtcgtaaggag
ggagggagggagggagggaggtagggaggtaGGTCGGTCGtcgttttctt
ttctttggatgaggggtgggaaagagggggagggggaggaatggaagaga
gtgaggagggaggcaaagcgTCGGCGAAACAAGCAttaaagaaagagggg
gaatAGGGGGAACGAGGCAACatcaggaagggaaggaaggaagcggagga
ggcgaccatgGAAGTGGCGCCTGGTTGCTTGCACTGAGTCGGTGGTAGGG
GGGatgcagggggaggccgagggggaggtgcggggggagggagggcgggg
gacagggcgagggggagctCGACGGCATCGcctggaaaagaagaaagaaa
agggaagccgTATCCTGGCTTTTCCCGCGATTTTCTTTGCATCCTTAACT
CCGGGACtggcccctttctttccttcgctttcactc back to topCoding sequence (CDS) from alignment at CM002463.1:145116..147351+ >rna4274 ID=rna4274|Name=rna4274|organism=Nannochloropsis gaditana|type=CDS|length=3552bp|location=Sequence derived from alignment at CM002463.1:145116..147351+ (Nannochloropsis gaditana)
ATGCTGTCATTTTCTCGCACGCGGACGGCATCACAGAGAAGAATAGACGG
GGATATTTCTCCGCCCATTACGACCTTCACCACCagcgtccttctcttcc
tccttgccctttaTCCCGCACCCGagacctccgccttcttcctgccctca
CCAATCTGCCAAAGTCCCGCCAGCTACATTGATAGAACAGGGTCCGCATG
GTCGCTTGTCTCGCCTAGACCACAGTCTTCCCTCTATAGTTCGGAGAGTA
ATAATACTCCGCAACGTCCCAAacagaagaaaggagggagggaaggctaC
AACAGGAATCGACGACGTGAGGAGGCACTAGATGGCATGAAGGTCGGCCA
CCGCTTTGAAATGGgCTACGAcatcgaggaggaaacggtgCCCCTGGCAG
AGGACGAGACGCTGCCCGTGATCGAAACCATCGCGTCCGCGGCGGATATG
CGGAAGGGCGAAGACGTCTTGGCCCTCAGGGTCTCTCGCTTGaccaccgt
ctcctccttcttcgtcctcgtctccggGAACAGCCGACCGCAAATTCAAG
CCATTGCTGGCGCCATCGAAGAAGACATGCTGGAGAAGCACGGCCTGGAG
GTCCGGAACGGTGGGGAGGGCACGGCGGACAGCGGGTGGATCCTGCTGGA
CTATGGGAGCGTGGTGGTGAATGTCATGACCCCTGTGGCTCGGAAATTCT
ACGCGTTGGAGAAGCTGTGGAAGAATGTGGgtgccttgcctccctccgtc
cttccctccctcctctccctcctcctcccttctctccctccctcccgccc
tctgcccttccctcccttcttctttccctccttcctccctctttccttcc
ctcccctccactcgATCTTGTACTCCGGCACCGATTGAATGCTGTCATTT
TCTCGCACGCGGACGGCATCACAGAGAAGAATAGACGGGGATATTTCTCC
GCCCATTACGACCTTCACCACCagcgtccttctcttcctccttgcccttt
aTCCCGCACCCGagacctccgccttcttcctgccctcaCCAATCTGCCAA
AGTCCCGCCAGCTACATTGATAGAACAGGGTCCGCATGGTCGCTTGTCTC
GCCTAGACCACAGTCTTCCCTCTATAGTTCGGAGAGTAATAATACTCCGC
AACGTCCCAAacagaagaaaggagggagggaaggctaCAACAGGAATCGA
CGACGTGAGGAGGCACTAGATGGCATGAAGGTCGGCCACCGCTTTGAAAT
GGgCTACGAcatcgaggaggaaacggtgCCCCTGGCAGAGGACGAGACGC
TGCCCGTGATCGAAACCATCGCGTCCGCGGCGGATATGCGGAAGGGCGAA
GACGTCTTGGCCCTCAGGGTCTCTCGCTTGaccaccgtctcctccttctt
cgtcctcgtctccggGAACAGCCGACCGCAAATTCAAGCCATTGCTGGCG
CCATCGAAGAAGACATGCTGGAGAAGCACGGCCTGGAGGTCCGGAACGGT
GGGGAGGGCACGGCGGACAGCGGGTGGATCCTGCTGGACTATGGGAGCGT
GGTGGTGAATGTCATGACCCCTGTGGCTCGGAAATTCTACGCGTTGGAGA
AGCTGTGGAAGAATGTGGgtgccttgcctccctccgtccttccctccctc
ctctccctcctcctcccttctctccctccctcccgccctctgcccttccc
tcccttcttctttccctccttcctccctctttccttccctcccctccact
cgATCTTGTACTCCGGCACCGATTGAATGCTGTCATTTTCTCGCACGCGG
ACGGCATCACAGAGAAGAATAGACGGGGATATTTCTCCGCCCATTACGAC
CTTCACCACCagcgtccttctcttcctccttgccctttaTCCCGCACCCG
agacctccgccttcttcctgccctcaCCAATCTGCCAAAGTCCCGCCAGC
TACATTGATAGAACAGGGTCCGCATGGTCGCTTGTCTCGCCTAGACCACA
GTCTTCCCTCTATAGTTCGGAGAGTAATAATACTCCGCAACGTCCCAAac
agaagaaaggagggagggaaggctaCAACAGGAATCGACGACGTGAGGAG
GCACTAGATGGCATGAAGGTCGGCCACCGCTTTGAAATGGgCTACGAcat
cgaggaggaaacggtgCCCCTGGCAGAGGACGAGACGCTGCCCGTGATCG
AAACCATCGCGTCCGCGGCGGATATGCGGAAGGGCGAAGACGTCTTGGCC
CTCAGGGTCTCTCGCTTGaccaccgtctcctccttcttcgtcctcgtctc
cggGAACAGCCGACCGCAAATTCAAGCCATTGCTGGCGCCATCGAAGAAG
ACATGCTGGAGAAGCACGGCCTGGAGGTCCGGAACGGTGGGGAGGGCACG
GCGGACAGCGGGTGGATCCTGCTGGACTATGGGAGCGTGGTGGTGAATGT
CATGACCCCTGTGGCTCGGAAATTCTACGCGTTGGAGAAGCTGTGGAAGA
ATGTGGgtgccttgcctccctccgtccttccctccctcctctccctcctc
ctcccttctctccctccctcccgccctctgcccttccctcccttcttctt
tccctccttcctccctctttccttccctcccctccactcgATCTTGTACT
CCGGCACCGATTGAATGCTGTCATTTTCTCGCACGCGGACGGCATCACAG
AGAAGAATAGACGGGGATATTTCTCCGCCCATTACGACCTTCACCACCag
cgtccttctcttcctccttgccctttaTCCCGCACCCGagacctccgcct
tcttcctgccctcaCCAATCTGCCAAAGTCCCGCCAGCTACATTGATAGA
ACAGGGTCCGCATGGTCGCTTGTCTCGCCTAGACCACAGTCTTCCCTCTA
TAGTTCGGAGAGTAATAATACTCCGCAACGTCCCAAacagaagaaaggag
ggagggaaggctaCAACAGGAATCGACGACGTGAGGAGGCACTAGATGGC
ATGAAGGTCGGCCACCGCTTTGAAATGGgCTACGAcatcgaggaggaaac
ggtgCCCCTGGCAGAGGACGAGACGCTGCCCGTGATCGAAACCATCGCGT
CCGCGGCGGATATGCGGAAGGGCGAAGACGTCTTGGCCCTCAGGGTCTCT
CGCTTGaccaccgtctcctccttcttcgtcctcgtctccggGAACAGCCG
ACCGCAAATTCAAGCCATTGCTGGCGCCATCGAAGAAGACATGCTGGAGA
AGCACGGCCTGGAGGTCCGGAACGGTGGGGAGGGCACGGCGGACAGCGGG
TGGATCCTGCTGGACTATGGGAGCGTGGTGGTGAATGTCATGACCCCTGT
GGCTCGGAAATTCTACGCGTTGGAGAAGCTGTGGAAGAATGTGGgtgcct
tgcctccctccgtccttccctccctcctctccctcctcctcccttctctc
cctccctcccgccctctgcccttccctcccttcttctttccctccttcct
ccctctttccttccctcccctccactcgATCTTGTACTCCGGCACCGATT
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