EWM26410.1, cds4264 (CDS) Nannochloropsis gaditana

Overview
NameEWM26410.1
Unique Namecds4264
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:145245..145469 +
Alignment locationCM002463.1:145585..145723 +
Alignment locationCM002463.1:145920..146114 +
Alignment locationCM002463.1:146359..146687 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26410.1
ProductRibosome-associated, Iojap
Orig transcript idgnl|cribi|Naga_100879g3.8824.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:145245..145469 +
CM002463.1supercontigCM002463.1:145585..145723 +
CM002463.1supercontigCM002463.1:145920..146114 +
CM002463.1supercontigCM002463.1:146359..146687 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR004394Iojap/RsfS/C7orf30
IPR025656Oligomer_dom
Homology
BLAST of EWM26410.1 vs. NCBI_GenBank
Match: gi|585108436|gb|EWM26410.1| (Ribosome-associated, Iojap [Nannochloropsis gaditana])

HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query:    1 MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNVGALPPSVLPSLLSLLLPSLPPSRPLPFPPFFFPSFLPLSFPPLHSILYSGTD 295
            MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNVGALPPSVLPSLLSLLLPSLPPSRPLPFPPFFFPSFLPLSFPPLHSILYSGTD
Sbjct:    1 MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNVGALPPSVLPSLLSLLLPSLPPSRPLPFPPFFFPSFLPLSFPPLHSILYSGTD 295          
BLAST of EWM26410.1 vs. NCBI_GenBank
Match: gi|585108435|gb|EWM26409.1| (Ribosome-associated, Iojap [Nannochloropsis gaditana])

HSP 1 Score: 494.967 bits (1273), Expect = 1.789e-175
Identity = 248/264 (93.94%), Postives = 251/264 (95.08%), Query Frame = 0
Query:    1 MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNVGALPPSVLPSLLSLLLPSLPP 264
            MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKN   +       L  +L P+LPP
Sbjct:    1 MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNGEEV------DLSHILRPNLPP 258          
BLAST of EWM26410.1 vs. NCBI_GenBank
Match: gi|553193987|ref|XP_005855870.1| (iojap-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293195|gb|EKU20495.1| iojap-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 373.629 bits (958), Expect = 4.167e-129
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 0
Query:    1 MLSFSRTRTASQRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIA 186
            MLSFSRTRTASQRRIDGDISPP TTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIA
Sbjct:    1 MLSFSRTRTASQRRIDGDISPPNTTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIA 186          
BLAST of EWM26410.1 vs. NCBI_GenBank
Match: gi|1210524500|dbj|GAX16758.1| (hypothetical protein FisN_21Hh205 [Fistulifera solaris])

HSP 1 Score: 129.413 bits (324), Expect = 1.581e-32
Identity = 88/229 (38.43%), Postives = 127/229 (55.46%), Query Frame = 0
Query:   29 SVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGRE--GYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETL-PVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGG----EGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNVGALPPSV 250
            SVLL L+ LY + E  A+ L            DR      L    P SS     S+N P+  K   G  E    +    + E +D ++      M   + ++   +  DETL P++E I  AAD RK ED++AL+V+ ++T++S  V+VSGNSRPQ QAIA AI  D+ ++ G   R GG    EG+A+SGWILLDYGSV+V++MTP +R +Y +E  WK  G +  ++
Sbjct:    4 SVLLQLVFLYASDEVEAWSLA-----------DR------LTGRVPSSSRNGHRSHNYPRYGKVDDGNSELQSTSTKHDKREMIDFIQ----EPMSSTVGDDKYSINTDETLLPLLECIVKAADGRKAEDIVALQVNHVSTLTSVLVIVSGNSRPQNQAIAAAITRDVQDELGQ--RPGGNGVPEGSAESGWILLDYGSVMVHIMTPKSRLYYNVEGQWKEKGGVATNI 209          
BLAST of EWM26410.1 vs. NCBI_GenBank
Match: gi|551674566|ref|XP_005840038.1| (hypothetical protein GUITHDRAFT_161153 [Guillardia theta CCMP2712] >gi|428184202|gb|EKX53058.1| hypothetical protein GUITHDRAFT_161153 [Guillardia theta CCMP2712])

HSP 1 Score: 125.561 bits (314), Expect = 2.396e-31
Identity = 66/138 (47.83%), Postives = 90/138 (65.22%), Query Frame = 0
Query:  131 PLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNVGALPPSVLPSLLSLLLPSLPPSRPL 268
            PLAED +LP+++ I  A D RK E + A RVS LT  + FF+   G+SRP +QAIA  +E+ M EK+G E++   +G  DSGWILLDYG V+VN+MT  AR+FY LE+ W+N G L P     L  L+ P+   + P+
Sbjct:   58 PLAEDPSLPLVQDIIRAMDERKAESIWAARVSHLTYSTEFFINCQGSSRPMLQAIAANVEDIMNEKYGREIK--WQGNPDSGWILLDYGEVIVNIMTAAAREFYDLEEHWQN-GELVP-----LEDLVTPNSQSTSPV 187          
BLAST of EWM26410.1 vs. NCBI_GenBank
Match: gi|1072227598|gb|OEU12337.1| (DUF143-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 120.553 bits (301), Expect = 1.028e-29
Identity = 64/143 (44.76%), Postives = 95/143 (66.43%), Query Frame = 0
Query:  126 EEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGG--EGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNVGALPPSVLPSLLSLLLPSLPPSR 266
            +E  VP  +DE   ++  I   AD RK ++++A+RVS+++TV+SF V+V+GNSRPQ QAIA  I++D+ E+  L     G  EG+ADSGW LLDYGSV+V+VMTP +R FY +E  WK+ G      +  + + +LP+ P + 
Sbjct:   17 DEILVPPEQDELAELVRCIVRGADGRKADNIVAMRVSKISTVTSFVVIVTGNSRPQNQAIAAVIKDDVNEEFALLPGATGVPEGSADSGWTLLDYGSVMVHVMTPKSRLFYNIEGKWKDQGGE----IMDITAAILPNAPTAE 155          
BLAST of EWM26410.1 vs. NCBI_GenBank
Match: gi|1210530962|dbj|GAX10502.1| (hypothetical protein FisN_21Lh205 [Fistulifera solaris])

HSP 1 Score: 119.783 bits (299), Expect = 6.188e-29
Identity = 63/135 (46.67%), Postives = 93/135 (68.89%), Query Frame = 0
Query:  121 MGYDIEEETVPLAEDETL-PVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGG----EGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNVGALPPSV 250
            M   + ++   +  DETL P++E I  AAD RK ED++AL+V+ ++T++S  V+VSGNSRPQ QAIA AI  D+ ++ G   R GG    EG+A+SGWILLDYG+V+V++MTP +R +Y +E  WK  G +  ++
Sbjct:   77 MSSTVGDDEYSINTDETLLPLLECIVKAADGRKAEDIVALQVNHVSTLTSVLVIVSGNSRPQNQAIAAAITRDVQDELGQ--RPGGNGVPEGSAESGWILLDYGNVMVHIMTPKSRLYYNVEGQWKEKGGVAMNI 209          
BLAST of EWM26410.1 vs. NCBI_GenBank
Match: gi|873222368|emb|CEM31303.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 115.931 bits (289), Expect = 5.452e-28
Identity = 55/140 (39.29%), Postives = 86/140 (61.43%), Query Frame = 0
Query:  131 PLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNVGALPPSVLPSLLSLLLPSLPPSRPLPF 270
            P++ D  +P I TIA A D+ K + + A+RV   + V+ F VL+ G+S PQ +AIA AIE+ M  KHG+E +   +G+ D GW++LDYGS++VN+MTP  R++Y +E  W+  G+ P  +   L S +       R + +
Sbjct:   33 PVSHDPQVPTIYTIAEAGDLHKADGISAMRVKYCSDVTDFIVLMHGHSVPQNKAIANAIEDAMARKHGIEAKR-RDGSVDGGWLVLDYGSILVNIMTPKKREYYNMEGHWRKQGSEPVPLAHVLRSDVREGYSTGRDVTY 171          
BLAST of EWM26410.1 vs. NCBI_GenBank
Match: gi|299472319|emb|CBN77507.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.775 bits (286), Expect = 1.039e-27
Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 0
Query:  132 LAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNVGALPPSVLPSLLSLLLPSLP 263
            + +D TLP + T   AAD RK  +++A+RV+ LT ++ F V++ GNSRPQ QAIA  IEE M E H  + ++  +G  +SGWILLDYG ++V++MTP +R +Y LE  W N   +P      L  +L P++P
Sbjct:   32 MEDDPTLPEVLTAVKAADERKAGNIVAIRVATLTVMTEFMVVLEGNSRPQNQAIAQNIEEKMEEMHQRKTKS--QGAPESGWILLDYGDIIVHIMTPKSRSYYDLESFWSNGERVP------LDGVLKPNVP 155          
BLAST of EWM26410.1 vs. NCBI_GenBank
Match: gi|224006702|ref|XP_002292311.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220971953|gb|EED90286.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 108.997 bits (271), Expect = 2.331e-26
Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query:  144 IASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKH-GLEVRNGG--EGTADSGWILLDYGSVVVNVMTPVARKFYALEKLW 240
            I  +ADMRK  D++ALRV+  T++++F V+VSG SRPQ QAIA +I +D+ EK+ G      G  EG+ADSGWILLDYG V+V+VMTP +R FY +E  W
Sbjct:    1 IVHSADMRKASDIVALRVTSCTSLTNFVVIVSGTSRPQNQAIANSIAKDVEEKYDGKRCLGKGVPEGSADSGWILLDYGEVMVHVMTPKSRLFYDIEGQW 100          
The following BLAST results are available for this feature:
BLAST of EWM26410.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108436|gb|EWM26410.1|0.000e+0100.00Ribosome-associated, Iojap [Nannochloropsis gadita... [more]
gi|585108435|gb|EWM26409.1|1.789e-17593.94Ribosome-associated, Iojap [Nannochloropsis gadita... [more]
gi|553193987|ref|XP_005855870.1|4.167e-12999.46iojap-like protein, partial [Nannochloropsis gadit... [more]
gi|1210524500|dbj|GAX16758.1|1.581e-3238.43hypothetical protein FisN_21Hh205 [Fistulifera sol... [more]
gi|551674566|ref|XP_005840038.1|2.396e-3147.83hypothetical protein GUITHDRAFT_161153 [Guillardia... [more]
gi|1072227598|gb|OEU12337.1|1.028e-2944.76DUF143-domain-containing protein [Fragilariopsis c... [more]
gi|1210530962|dbj|GAX10502.1|6.188e-2946.67hypothetical protein FisN_21Lh205 [Fistulifera sol... [more]
gi|873222368|emb|CEM31303.1|5.452e-2839.29unnamed protein product [Vitrella brassicaformis C... [more]
gi|299472319|emb|CBN77507.1|1.039e-2743.94conserved unknown protein [Ectocarpus siliculosus][more]
gi|224006702|ref|XP_002292311.1|2.331e-2655.00predicted protein, partial [Thalassiosira pseudona... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4274rna4274Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications