rna427, rna427 (mRNA) Nannochloropsis gaditana

Overview
Namerna427
Unique Namerna427
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1965
Alignment locationCM002455.1:1063175..1064213 -

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Properties
Property NameValue
ProductComplex 1 LYR protein
Orig transcript idgnl|cribi|Naga_100003g55.1791.mrna
Orig protein idgnl|cribi|Naga_100003g55.1791
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1063175..1064213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g55gene411Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna427rna427-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30274.1cds427Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna427 ID=rna427|Name=rna427|organism=Nannochloropsis gaditana|type=mRNA|length=1965bp
ATGGACTTTGAACAGGCCTTATACCGCGTGTACGACCGCACATTGGACGG
ACTCCTGCAAGATCGCCCCCTCGTTGAAAATGTGCCTCAAACTAAGCCCC
GTTATTTGTGCAACATATGCCTCCACGGACTCTGGTTCTTCGCCCTCACC
CTCCTCACAATATTTTGGGGGTTGCACCTCAATTTCGTCAATTCTCCGGG
ATGTTTGTACACTACCATGCAAACGATGTACGAGGGAAGTGAAATTAGTC
ATCTCGCGACCCAACCCTCGTTTACGACCGCACGAGCCGGGTCCTCTACT
CTCAGCGTGGTCCGTGAAGACGGCAACAAGACGTTGGGCAAGTCGTTGCC
TCTCCGAGCAGCACCAGACCCCCGGAATGCGTCGACCTGGTTGGAGGACG
ACGAGATATTGCAGATCAGGATTGAGCAATCTGGTGTTTACATGGCTGAG
GAGGGGGGAAGGAAAGGACCGGGCCGGAGGATGAGGGGATATAGCGCGTT
CCCGGGGGCGGAGAGAGGGGAGGCTGGGACCTCGGAGACGACGGAGATCA
TAAATGACGCGGATAGCAATGACACCGCGCTTTCTTCGTTCAACCCTGAC
TATGTGTACGCCCAGAACACGGCATTGCTGTACTTGGACCCTGCCTTCCT
CAGCCGGCACCGGGTGAGGCGCGTGAACGTGAGTCTGGACGAGATGTGTA
TGACCAAGGGGCCCGGGCTCGGTTTCGTGGTCGACGTCGCCGTGGGGGAC
TTCAACACCCTCCTGGTCAACCAGCTCATGTTCACCTTTCGGAGCGACGG
GATGTTGCGGAAGACCCGCACCAACGAGACGTGGAGCTGGCGGGCGGAGT
CCTTGCCCCCCCCGCGGGGCCGCCCGTTCTTCTCCCTCGACAACTGGTCA
CTGAAGCTCTCTGCCCTTCTCCAGTCGCTCTCCGCGTTCTTCTTTCTCTC
GGGGACCACGGCCATCGTCGTCCGCATGCTCATGACCTCCGGCGTCGCCC
TCATGTACCCGTGTTTCTTCTGCCTCCGCCGCTTGGGGGCCCGGGGCTTG
AGCCTCGGGGTCCTGGCCCGCTCTTACGCTTGGCTTGGCGTTCCTATGCA
GAGGCTCCAGGCGCGGGGGAAGCCTCTGGCCCCTTTTTTGCTCGCGCACC
TCTGCAAGGTCCTGGTGCTGTACTCCATGTACGAGGCGTGCCAAGTCTTT
TTTGTGGAGACCCTGTACGCCAAAAGCGGTGCCTCGGGACTTCCCTTCGC
GGTTTACGGGCTTGTCATGCTCCTTGAGTACGTAAGCATGCTCTACGTCC
GGAGTGCACTGAGCATCAAGTACTTTCCTCGGGTCGTCTTCCTCTACCTC
CTCGCTTTCCACCTCTACTACTACCTGGTGCCGTTCGGCTTTAGCTCCCT
ACTTCTTCTTGCTATCAGCCTCTTGCTCCTGCACTCCGTGATCTATGTCC
TCCTCTTCCTCGAGCTTCCCGCTTTTCGCGCCTCCATCGTCTCCTACGAC
ACCCCACGCGCTTTCTACACCGATACCGGCCTCCCTGCCCACCCCAACTC
CATCCCTCCCTCCTGGAGCCTCTTCCTTCCCCTGACGCTGGGAAGGAGGG
GCGACGACGGGGGCCGGGGGGGAGCGGGAGGTGTGTACGAGGAGGAGGTG
CCCGATCGTCCGCGGCGAGGGGCGGGTGTGGTCAGGGTCCAGCAGGTGAT
CGTGGAGAGGGTGGAGAGCCGGCAACAGAGGACGAGGAGCCGGCGAGGGC
AAGAGGAGCAGCGTGGGGGTGAGGAAAAGGAAGGGAACCTTGGTGGCGAA
GCGAGGAATGAGGAAGGGGAGGCTGAGCTGGGTGTGGCGGGGTATGACGG
GAGTCCAAGGGATACCATGGAGTCACTCGAACGCATGTGCAGGCCGCAAA
GTAAATTCGAAAAAACGAGTTGTAAGAAAGGAAGCAAGAGTCTTAGGCCA
AGTCGTCCCCTCTAG
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protein sequence of rna427

>rna427-protein ID=rna427-protein|Name=rna427|organism=Nannochloropsis gaditana|type=polypeptide|length=77bp
MSYPASAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERL
QQLLQKGEEHRVWIMKKYHLKDIPGNR
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mRNA from alignment at CM002455.1:1063175..1064213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna427 ID=rna427|Name=rna427|organism=Nannochloropsis gaditana|type=mRNA|length=1039bp|location=Sequence derived from alignment at CM002455.1:1063175..1064213- (Nannochloropsis gaditana)
ACACATGTCTGGACATATACACCCAATCCTCTTCCAGACAAAGTCATGCG
GAAGCGGCATGAACCCTATGAAAACCGCGCGACATGCATGTGCCCCGCAG
CAACGCGGAAAGCCCGGCATTTCCGCAGAGTCAAACACAAAGAGGCAGTA
AGGTTGCTTATGGGGAGGTCATTCAACAAGTTGTGGGTCAAGAAAAATGA
TGTCGCGATGGTTTAGTAGTGAGGCCAGTCACAGCGCTCGGGTTGAAATG
TAAATTCTTTATGATGCGTAATGGCTCTATATTCGAATGTCTCGCTTTCA
TTTACGAAATGTAAAAAGAGAGAAAACCCGTAAGGGAAAATGATGGAGGA
TATCGGTCACCACATCAAGAACTGATAGAAACACTTGACCTTTCACCAGG
TCTCAAAGCATTCTTTGCTAATCTACAGCTCTTGTTGCTAGCCTGAATAG
CGAGGCCCAGTCCGCCCGCTCTATCGACACTATCTGTCATGTCCTATCCA
GCCTCAGCAGTTGCGCTGTATCGTCGAGTATTGCGCAGCCTGCGCCAATT
TGACGACCCTGGAAAGAAGTGGTGAGGACGGACAGCTATCTTAACAAAGC
CAGTGTTAGGGAAGTTATCTCAGCTGTCGATGTCCCAGGTGGTGGTGCGC
AATTAGAGCTGCATGGGGGTCACTGTACCTCGCACGTCTGACCAAAGTCT
TCCCTACCTCGTTCCGAGGACCAGGTACTACCGGAACTGGACGCGCAACA
ACATCGCCACTTTTAATGATGAGGATGATCCGGAGCGGCTCCAGCAGCTT
TTGCAAAAAGGAGAGGAGCATCGCGTCTGGATAATGAAAAAGTACCATTT
GAAGGACATTCCTGGCAATAGATGACTTTGCCCTGGGTGCAGATGACTGT
ACCTAGAGGGGACGACTGTTGGTAAGGATACTTTAAAGAGGACAGGTTAT
GTAGCACGCTGGACAGACTTGTAAATTGTTTGAAAGAAAAACTTGCAAAA
GAGGGGGCCTCCGCCCACCTTGGCCTAAGACTCTTGCTT
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Coding sequence (CDS) from alignment at CM002455.1:1063175..1064213-

>rna427 ID=rna427|Name=rna427|organism=Nannochloropsis gaditana|type=CDS|length=468bp|location=Sequence derived from alignment at CM002455.1:1063175..1064213- (Nannochloropsis gaditana)
GTACTACCGGAACTGGACGCGCAACAACATCGCCACTTTTAATGATGAGG
ATGATCCGGAGCGGCTCCAGCAGCTTTTGCAAAAAGGAGAGGAGCATCGC
GTCTGGATAATGAAAAAGTACCATTTGAAGGACATTCCTGGCAATAGATG
AATGTCCTATCCAGCCTCAGCAGTTGCGCTGTATCGTCGAGTATTGCGCA
GCCTGCGCCAATTTGACGACCCTGGAAAGAAGTGGTACTACCGGAACTGG
ACGCGCAACAACATCGCCACTTTTAATGATGAGGATGATCCGGAGCGGCT
CCAGCAGCTTTTGCAAAAAGGAGAGGAGCATCGCGTCTGGATAATGAAAA
AGTACCATTTGAAGGACATTCCTGGCAATAGATGAATGTCCTATCCAGCC
TCAGCAGTTGCGCTGTATCGTCGAGTATTGCGCAGCCTGCGCCAATTTGA
CGACCCTGGAAAGAAGTG
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Synonyms
Publications