EWM30274.1, cds427 (CDS) Nannochloropsis gaditana

Overview
NameEWM30274.1
Unique Namecds427
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1063643..1063725 -
Alignment locationCM002455.1:1063339..1063489 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30274.1
ProductComplex 1 LYR protein
Orig transcript idgnl|cribi|Naga_100003g55.1791.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1063643..1063725 -
CM002455.1supercontigCM002455.1:1063339..1063489 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|585112933|gb|EWM30274.1| (Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 162.925 bits (411), Expect = 5.950e-51
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
Query:    1 MSYPASAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKYHLKDIPGNR 77
            MSYPASAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKYHLKDIPGNR
Sbjct:    1 MSYPASAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKYHLKDIPGNR 77          
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|1159649267|gb|OPJ78437.1| (LYR motif-containing protein 9 [Patagioenas fasciata monilis])

HSP 1 Score: 59.3066 bits (142), Expect = 2.681e-9
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
            +AV LYR +LR  R+  + G + +YR+  R +     DEDDPER+QQ++++  E   W+M KY
Sbjct:   84 TAVQLYRYLLRCCRRLPEEGARQHYRHAVRQSFKVHADEDDPERIQQIIKRAIEDADWVMNKY 146          
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|704581900|ref|XP_010188721.1| (PREDICTED: LYR motif-containing protein 9 [Mesitornis unicolor])

HSP 1 Score: 57.3806 bits (137), Expect = 3.604e-9
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
            S+V LYR +LR  +Q  +   + +YR+  R +     DEDDPER+QQ++++  E   W+M KY
Sbjct:   12 SSVQLYRYLLRCCKQLPEESIRQHYRHAVRQSFKVHADEDDPERIQQIIKRAIEDADWVMNKY 74          
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|663282147|ref|XP_008498812.1| (PREDICTED: LYR motif-containing protein 9 [Calypte anna])

HSP 1 Score: 56.6102 bits (135), Expect = 5.699e-9
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
            S+V LYR +LR  +Q  +   + +YR+  R +     DEDDPER+QQ++++  E   W+M KY
Sbjct:   12 SSVQLYRYLLRCCKQLPEESIRQHYRHAVRQSFRVHADEDDPERIQQIIKRAIEDADWVMNKY 74          
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|1211419012|ref|XP_021495455.1| (LYR motif-containing protein 9 [Meriones unguiculatus] >gi|1211419014|ref|XP_021495456.1| LYR motif-containing protein 9 [Meriones unguiculatus] >gi|1211419016|ref|XP_021495457.1| LYR motif-containing protein 9 [Meriones unguiculatus])

HSP 1 Score: 56.6102 bits (135), Expect = 7.089e-9
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
            +++ LYR +LR  RQ    G + YY++  R +    +DED+PER+QQ++++  E   WIM KY
Sbjct:   12 TSLQLYRYLLRCCRQLPTKGIQEYYKHAVRQSFRVHSDEDNPERIQQIIKRAIEDADWIMNKY 74          
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|1197625998|ref|XP_021144438.1| (LYR motif-containing protein 9 isoform X1 [Columba livia] >gi|1197626001|ref|XP_021144439.1| LYR motif-containing protein 9 isoform X1 [Columba livia] >gi|1197626004|ref|XP_021144440.1| LYR motif-containing protein 9 isoform X1 [Columba livia])

HSP 1 Score: 56.225 bits (134), Expect = 9.834e-9
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
            +++ LYR +LR  R   + G + +YR+  R +     DEDDPER+QQ++++  E   W+M KY
Sbjct:   12 TSLQLYRYLLRCCRLLPEEGARQHYRHAVRQSFKVHADEDDPERIQQIIKRAIEDADWVMNKY 74          
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|1062885107|ref|XP_017940328.1| (PREDICTED: LYR motif-containing protein 9 isoform X2 [Manacus vitellinus])

HSP 1 Score: 56.225 bits (134), Expect = 1.108e-8
Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
            SAV LYR +LR  R+  +   + +YR+  R +     DEDDPER+QQ++++  E   W+M KY
Sbjct:   12 SAVRLYRYLLRCCRRLPEGSVRQHYRHAIRQSFKVHADEDDPERIQQIIKRAIEDADWVMNKY 74          
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|1004139731|gb|KXZ47735.1| (hypothetical protein GPECTOR_33g617 [Gonium pectorale])

HSP 1 Score: 55.4546 bits (132), Expect = 1.243e-8
Identity = 26/68 (38.24%), Postives = 42/68 (61.76%), Query Frame = 0
Query:    1 MSYPASAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
            MS P++A+ALYR +LR  +       + YYR+  R +  +  DE DPER+Q +L++  +   WI++KY
Sbjct:    1 MSAPSTALALYRELLRQTKSLPK-STQTYYRHHIRQHYNSHRDEADPERVQHMLERARQDAQWILRKY 67          
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|1051188385|ref|XP_017677120.1| (PREDICTED: LYR motif-containing protein 9 isoform X2 [Lepidothrix coronata])

HSP 1 Score: 56.225 bits (134), Expect = 1.394e-8
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 0
Query:    6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
            SAV LYR +LR  R+  +     +YR+  R +     DEDDPER+QQ++++  E   W+M KY
Sbjct:   12 SAVQLYRYLLRCCRRLPEGSVCQHYRHSIRQSFKVHADEDDPERIQQIIKRAIEDADWVMNKY 74          
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|671005439|ref|XP_008693580.1| (PREDICTED: LYR motif-containing protein 9 isoform X1 [Ursus maritimus])

HSP 1 Score: 55.8398 bits (133), Expect = 1.540e-8
Identity = 26/70 (37.14%), Postives = 42/70 (60.00%), Query Frame = 0
Query:    6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKYHLKDIPG 75
            + + LYR +LR  RQ    G + +Y++  R +    +DED+PER+QQ++Q+  E   WIM K  ++ I G
Sbjct:   12 TPLQLYRYLLRCCRQLPTKGVQEHYKHAVRQSFWVHSDEDNPERIQQIIQRAIEDADWIMNKESMECISG 81          
The following BLAST results are available for this feature:
BLAST of EWM30274.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112933|gb|EWM30274.1|5.950e-51100.00Complex 1 LYR protein [Nannochloropsis gaditana][more]
gi|1159649267|gb|OPJ78437.1|2.681e-941.27LYR motif-containing protein 9 [Patagioenas fascia... [more]
gi|704581900|ref|XP_010188721.1|3.604e-939.68PREDICTED: LYR motif-containing protein 9 [Mesitor... [more]
gi|663282147|ref|XP_008498812.1|5.699e-939.68PREDICTED: LYR motif-containing protein 9 [Calypte... [more]
gi|1211419012|ref|XP_021495455.1|7.089e-939.68LYR motif-containing protein 9 [Meriones unguicula... [more]
gi|1197625998|ref|XP_021144438.1|9.834e-938.10LYR motif-containing protein 9 isoform X1 [Columba... [more]
gi|1062885107|ref|XP_017940328.1|1.108e-841.27PREDICTED: LYR motif-containing protein 9 isoform ... [more]
gi|1004139731|gb|KXZ47735.1|1.243e-838.24hypothetical protein GPECTOR_33g617 [Gonium pector... [more]
gi|1051188385|ref|XP_017677120.1|1.394e-841.27PREDICTED: LYR motif-containing protein 9 isoform ... [more]
gi|671005439|ref|XP_008693580.1|1.540e-837.14PREDICTED: LYR motif-containing protein 9 isoform ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna427rna427Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications