EWM30274.1, cds427 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|585112933|gb|EWM30274.1| (Complex 1 LYR protein [Nannochloropsis gaditana]) HSP 1 Score: 162.925 bits (411), Expect = 5.950e-51 Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
Query: 1 MSYPASAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKYHLKDIPGNR 77
MSYPASAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKYHLKDIPGNR
Sbjct: 1 MSYPASAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKYHLKDIPGNR 77
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|1159649267|gb|OPJ78437.1| (LYR motif-containing protein 9 [Patagioenas fasciata monilis]) HSP 1 Score: 59.3066 bits (142), Expect = 2.681e-9 Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0
Query: 6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
+AV LYR +LR R+ + G + +YR+ R + DEDDPER+QQ++++ E W+M KY
Sbjct: 84 TAVQLYRYLLRCCRRLPEEGARQHYRHAVRQSFKVHADEDDPERIQQIIKRAIEDADWVMNKY 146
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|704581900|ref|XP_010188721.1| (PREDICTED: LYR motif-containing protein 9 [Mesitornis unicolor]) HSP 1 Score: 57.3806 bits (137), Expect = 3.604e-9 Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
Query: 6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
S+V LYR +LR +Q + + +YR+ R + DEDDPER+QQ++++ E W+M KY
Sbjct: 12 SSVQLYRYLLRCCKQLPEESIRQHYRHAVRQSFKVHADEDDPERIQQIIKRAIEDADWVMNKY 74
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|663282147|ref|XP_008498812.1| (PREDICTED: LYR motif-containing protein 9 [Calypte anna]) HSP 1 Score: 56.6102 bits (135), Expect = 5.699e-9 Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
Query: 6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
S+V LYR +LR +Q + + +YR+ R + DEDDPER+QQ++++ E W+M KY
Sbjct: 12 SSVQLYRYLLRCCKQLPEESIRQHYRHAVRQSFRVHADEDDPERIQQIIKRAIEDADWVMNKY 74
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|1211419012|ref|XP_021495455.1| (LYR motif-containing protein 9 [Meriones unguiculatus] >gi|1211419014|ref|XP_021495456.1| LYR motif-containing protein 9 [Meriones unguiculatus] >gi|1211419016|ref|XP_021495457.1| LYR motif-containing protein 9 [Meriones unguiculatus]) HSP 1 Score: 56.6102 bits (135), Expect = 7.089e-9 Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 0
Query: 6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
+++ LYR +LR RQ G + YY++ R + +DED+PER+QQ++++ E WIM KY
Sbjct: 12 TSLQLYRYLLRCCRQLPTKGIQEYYKHAVRQSFRVHSDEDNPERIQQIIKRAIEDADWIMNKY 74
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|1197625998|ref|XP_021144438.1| (LYR motif-containing protein 9 isoform X1 [Columba livia] >gi|1197626001|ref|XP_021144439.1| LYR motif-containing protein 9 isoform X1 [Columba livia] >gi|1197626004|ref|XP_021144440.1| LYR motif-containing protein 9 isoform X1 [Columba livia]) HSP 1 Score: 56.225 bits (134), Expect = 9.834e-9 Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 0
Query: 6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
+++ LYR +LR R + G + +YR+ R + DEDDPER+QQ++++ E W+M KY
Sbjct: 12 TSLQLYRYLLRCCRLLPEEGARQHYRHAVRQSFKVHADEDDPERIQQIIKRAIEDADWVMNKY 74
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|1062885107|ref|XP_017940328.1| (PREDICTED: LYR motif-containing protein 9 isoform X2 [Manacus vitellinus]) HSP 1 Score: 56.225 bits (134), Expect = 1.108e-8 Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 0
Query: 6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
SAV LYR +LR R+ + + +YR+ R + DEDDPER+QQ++++ E W+M KY
Sbjct: 12 SAVRLYRYLLRCCRRLPEGSVRQHYRHAIRQSFKVHADEDDPERIQQIIKRAIEDADWVMNKY 74
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|1004139731|gb|KXZ47735.1| (hypothetical protein GPECTOR_33g617 [Gonium pectorale]) HSP 1 Score: 55.4546 bits (132), Expect = 1.243e-8 Identity = 26/68 (38.24%), Postives = 42/68 (61.76%), Query Frame = 0
Query: 1 MSYPASAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
MS P++A+ALYR +LR + + YYR+ R + + DE DPER+Q +L++ + WI++KY
Sbjct: 1 MSAPSTALALYRELLRQTKSLPK-STQTYYRHHIRQHYNSHRDEADPERVQHMLERARQDAQWILRKY 67
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|1051188385|ref|XP_017677120.1| (PREDICTED: LYR motif-containing protein 9 isoform X2 [Lepidothrix coronata]) HSP 1 Score: 56.225 bits (134), Expect = 1.394e-8 Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 0
Query: 6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKY 68
SAV LYR +LR R+ + +YR+ R + DEDDPER+QQ++++ E W+M KY
Sbjct: 12 SAVQLYRYLLRCCRRLPEGSVCQHYRHSIRQSFKVHADEDDPERIQQIIKRAIEDADWVMNKY 74
BLAST of EWM30274.1 vs. NCBI_GenBank
Match: gi|671005439|ref|XP_008693580.1| (PREDICTED: LYR motif-containing protein 9 isoform X1 [Ursus maritimus]) HSP 1 Score: 55.8398 bits (133), Expect = 1.540e-8 Identity = 26/70 (37.14%), Postives = 42/70 (60.00%), Query Frame = 0
Query: 6 SAVALYRRVLRSLRQFDDPGKKWYYRNWTRNNIATFNDEDDPERLQQLLQKGEEHRVWIMKKYHLKDIPG 75
+ + LYR +LR RQ G + +Y++ R + +DED+PER+QQ++Q+ E WIM K ++ I G
Sbjct: 12 TPLQLYRYLLRCCRQLPTKGVQEHYKHAVRQSFWVHSDEDNPERIQQIIQRAIEDADWIMNKESMECISG 81 The following BLAST results are available for this feature:
BLAST of EWM30274.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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