|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_102147g1.1322.mrna |
| Orig protein id | gnl|cribi|Naga_102147g1.1322 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:129568..130659 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4267 ID=rna4267|Name=rna4267|organism=Nannochloropsis gaditana|type=mRNA|length=2844bp
ATGGGCCGCATCCACACCTTGCGCACCCGCCCTGCCCCCTTTCCCCATGC
CTGGATTAGAAACGAGACGCTCCTGTGCGTGGACCAGGAGGTGGGCTTTG
TTGGCTCCGGGCTCTCTTTCGGGCTGGGAAAATTCGACACTCCGCAGCAC
GTGCTCAAAGACGAGGCAGCGGTGGTCCCGCGACGCGTGCAGGATGCCCA
AGCCCGTCCGGGAACGGGCGTCCAGGCACGCCGACCTACATGGTGCGGCC
GAGACTACCAGAACCCGCTGGTCAAGGACATGTGCCTGGTGGAGCTCGCC
CATACGTCCCTGGAGCTTCCTTACCATCATCGGGGCACGGTGCCCCGCCT
GCCCCAACACACAGCCTGTGTGGCCGTCACGGGCAGTGCCTGCCACGACC
TGTGTTGGCACTTTGTAAACCAATGGAATTTGGAACGGGCGCGAGAAATG
GAGGCGCGCCACGCCATTTCTAACGCCCGCCTGCGTCAGGAAGAATTCCC
CTTTGCCCTACCTCCCCCCTTGCTCCCAGTGCGCCTGAGGGTGGGGCCGT
CCCTGGCGGGTGGCATCCGCCCACACCACCCTCCCAGCCACATTCAGGCG
GACACAAGCAGCGCCGAAACCGGTGGTCCGGCCGGGGTGGATGGCTTGGC
TCGGAAAACCGTCACCCGCCTCGTCTTCGGCACCGCCTCCAGCGTTGCCC
GCCCCGTCCCATCCACCGAGGAGGACCACGGCGGACCCCCCCGGGACGTG
TTCGATGCAGTGGAGCAAGAGGCCAGCCAAAAGCTGAAGGAATGGTTGAG
ACCCCGGGAAGAGCGGCGACAACGGCGCCTGCTCGAATTGCAGCATGACG
TGAATCTGACCAGTCAATGCCAAGTCTTGCAATTCCAAGCTCTGGTGGAG
CCGCCCGTGGCCCCTCCTTCCAGTCGCTCATGGGCAAACGAGGAGGTAGA
CACGAAGACATCCTTGTCCTTTCCTCGGCGGCACCCGCCCCAGGGGTGGG
CGATGAATGAAGAGGTGGAGGACGATGCCGTCGGGTGTCAGGACCGAAAA
AGCAGCAGCTCCAGCCACCGCTCTCCCCAGCTGTGCAGGGACGTGAAAGA
AGACAAAAACGTCCGGGTATATTCCTCTCCTCTGTCGGGATCCGCTCCCT
CTTCCCCTTCCAAACAGCAGCTGGACCTGCTGGCAGAGGCTGCCAAAGAC
AGGACCGGGACCTCGCAGCAAGGCCGAAAGCGTCAGCAGCGCATGCACCA
ATACCTACGTCTCCGTCGAGCACTGCACGTGCGGGAACTGGAAGCGGAGG
AGGAGGAAGAAGTCTCCCTCGGTCCCTTGGCCTCCTGCCACTGCCGGGTG
GTCCGGAGCCTGGGTGCATGGAGCGGGGCCCTGCTAGAGCCCCAGCGCAG
CGTCTTGGAAGCCTACGAGCAGGTCATCTCCAACGCCGAGCACTACCTGT
ACTTCGAGAACCCCACCTTTATCAGCGGGGTCCAGGGCACCGCGGATGTG
AGCAACCGGCTGGCGGAGGCCCTCTTGAACCGCATTGTCCGAGCGCACGA
CAGCCAAGAGACCTTTCGTGTCGTCTTCCTCCTCCCCCTCCTCCCTGTGT
ACGAAGGAGGCTTGCACGGCGCCACCCCGCCCATGCTGACCTCCGCCCTA
TACCAGCAGCTAACCTCCGTCAACACGCTCTGGCGCCGTCTCCAGGACAT
GGTGCCCCGTCCCGACGAATACTTGCAATTCTTCGGCCTTCGTTCCTACA
CACGCTTGAATGGGGATCCTGGGAAGGGTCTGGCTCCCCACTTGGTGTCC
GAACAGATCTTCGTCAACAGCAGATTGCTCGTGGCAGACGACCGGTACGT
GGTGCTTGGCTCGGCCGCTTTGAACGACCGCTCCTTGATGGGCACGCGGG
ACAGCGAGATGGCCTTGGTATTGGAGGACACGGTCTGGGAGCCCGGGGCC
ATGAACCACGCGGACTACCACGCCGGTCGCTTTGCCCGCTCCCTGCGCTT
GCGCCTGTGGGGCGAGCACGTCGGCCTCCTGGACGAGTACGTGCAACGGC
GGGTGCTGGAAGCCGCCATGATGGAGGACGGCAGGGAAGAACTCCTCGAC
CAAGAGCCTGCGCCCGAGGACGTGTACGCACCGTTGCTGGATCCGTCTGC
TGCGGCCACCTGGGCCTACCTCCGCCGGGTGGCTCGAAAGAACACGGCCA
TCCTGGCGCACGTCTTTCCGCAGGCATTGCCCGCCCACACGGTGCGAAGC
ATCGAGGCGCTTAAACACGTGGTCGTGGACGGCACAGTCTCGGAGGCTAC
CCGGACGTTTGTCGAGGAAGTGCTGGGAGAAGAGCGGGCCCAGGAGGAGG
AAGAAATCTTGATGGACGCGCTCTTGAAGGAAGAGGAAGGGGAGAACGAT
GGAGGCGCCTTTGAGGACGTGGGGGGGGTGATCCGGGGGGGGGAGCACCG
AGACGCTGTCAAGGAGAAGTTGAAGTGGCTGGGTCGGCTCCAGGGACACC
TGGTTGAATACCCGAAAGAGTTTCTGGCGGACGATTTAACCTCCTTGCGG
CCCGTAAACGGGCTTCAGGGATGGAGCCTGTGATGGGACAGGGGGATAGA
AAGCACATTGCCCCATTTGCTGGCAAGTGCTATGGTCGATGTTGGCGACG
AGGAAGATAGCTTTACGATCCGTTTTTGCCAGAGCCATTGGATCACATGA
AGGGAAGTAATTCGAAACTTCACCCATTCTTTTCATAGCATCAACGAAAT
TTGCATACAATGGAAGCTTTGCCTGTCAGTGGTACCATGTCCGGCATCGT
CCTGCTCGCAATTTCTGCTTTTTGGGTTCAAGAGATCCTTGCGC back to topprotein sequence of rna4267 >rna4267-protein ID=rna4267-protein|Name=rna4267|organism=Nannochloropsis gaditana|type=polypeptide|length=88bp
MPNGHYLLGAVGKTLNYLALRYGLAVVVTNGVVLDRSSTPSIPSSSASSA
PSPSLWGCRPALGVYWSIYPSLRLMLRLHGGGGGREGG back to topmRNA from alignment at CM002463.1:129568..130659+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4267 ID=rna4267|Name=rna4267|organism=Nannochloropsis gaditana|type=mRNA|length=1092bp|location=Sequence derived from alignment at CM002463.1:129568..130659+ (Nannochloropsis gaditana)
aggggagggacatGAAGAAGATATTTCGAGAGAGACAGGGGCTTGAACTC
ACCTTAATTAGGGGCTTGAACTCACCTTAACTTGGGATTGGAAACAGGCG
CCCGTTCATCGTGGCCTCCGACTGCTTCTCATTGACTCACTTCGCGCACT
TTTGGCCCCTGTGCTCGGACAGACCATGCCCAACGGTAACCGTTACTCTT
TTCTCTTATCCGTATCTTGTCTGTCCGACCGTTTACTTTATCCTGGAGGG
TGTTTGAACCTCCTTGCTATCGTCCCCCTTATCTTCAACTTCAATTAAAT
GACGCACTCGCTGCTTCTCCATtcacccttctttcccctctccctccctc
ccttcctctttcccttctcctctccctccctcttgctctctccACTTTCC
ATTTCCAGGACACTATCTCTTAGGAGCAGTGGGAAAAACACTCAACTACC
TTGCCTTACGCTATGGTCTGGCCGTCGTCgtacgtcctcctcctcctcct
tcctcccttcctccctccctcccgcccttccaccctccctccctccctcc
gtcttcccattccctgcccccttcttcactTCCACCCGTCCCTCAACCCT
CTAAGACCAGCCTTGCTTCCCCAAAAACCCGCAGGTCACCAATGGGGTAG
TACTGGATCGATCCTctaccccctccatcccttcctcctccgcctcctcc
gcccccagcccctccctctggggCTGTAGACCTGCCTTGGGTatgcctgg
gaggaggaagggagggaaggcgggggggaaggagaggacgaggaggaaaa
ggaaagagggaagagagagaagataggcgggaaggggaggatgagaagga
aagaggaaagagaaggaaggaagaagcctCCAAGAGACGGACCGACGAcg
tggaaagggatggcAATGGCCGAGGAAGGACCTACTTTCCTTATGTACCT
GCCTAAATCCCCCTTTCgcattccttttttctcccccgacctcgccttcc
acgtcttcttccagggGTCTATTGGTCCATCTATCCCTCCCTACGGCTCA
TGTTGCGCCTAcatggggggggaggcgggagggagggaggga back to topCoding sequence (CDS) from alignment at CM002463.1:129568..130659+ >rna4267 ID=rna4267|Name=rna4267|organism=Nannochloropsis gaditana|type=CDS|length=1060bp|location=Sequence derived from alignment at CM002463.1:129568..130659+ (Nannochloropsis gaditana)
ATGCCCAACGGACACTATCTCTTAGGAGCAGTGGGAAAAACACTCAACTA
CCTTGCCTTACGCTATGGTCTGGCCGTCGTCGTCACCAATGGGGTAGTAC
TGGATCGATCCTctaccccctccatcccttcctcctccgcctcctccgcc
cccagcccctccctctggggCTGTAGACCTGCCTTGGggGTCTATTGGTC
CATCTATCCCTCCCTACGGCTCATGTTGCGCCTAcatggggggggaggcg
ggagggagggagggaATGCCCAACGGACACTATCTCTTAGGAGCAGTGGG
AAAAACACTCAACTACCTTGCCTTACGCTATGGTCTGGCCGTCGTCGTCA
CCAATGGGGTAGTACTGGATCGATCCTctaccccctccatcccttcctcc
tccgcctcctccgcccccagcccctccctctggggCTGTAGACCTGCCTT
GGggGTCTATTGGTCCATCTATCCCTCCCTACGGCTCATGTTGCGCCTAc
atggggggggaggcgggagggagggagggaATGCCCAACGGACACTATCT
CTTAGGAGCAGTGGGAAAAACACTCAACTACCTTGCCTTACGCTATGGTC
TGGCCGTCGTCGTCACCAATGGGGTAGTACTGGATCGATCCTctaccccc
tccatcccttcctcctccgcctcctccgcccccagcccctccctctgggg
CTGTAGACCTGCCTTGGggGTCTATTGGTCCATCTATCCCTCCCTACGGC
TCATGTTGCGCCTAcatggggggggaggcgggagggagggagggaATGCC
CAACGGACACTATCTCTTAGGAGCAGTGGGAAAAACACTCAACTACCTTG
CCTTACGCTATGGTCTGGCCGTCGTCGTCACCAATGGGGTAGTACTGGAT
CGATCCTctaccccctccatcccttcctcctccgcctcctccgcccccag
cccctccctctggggCTGTAGACCTGCCTTGGggGTCTATTGGTCCATCT
ATCCCTCCCTACGGCTCATGTTGCGCCTAcatggggggggaggcgggagg
gagggaggga back to top
|