EWM26416.1, cds4257 (CDS) Nannochloropsis gaditana

Overview
NameEWM26416.1
Unique Namecds4257
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:129743..129752 +
Alignment locationCM002463.1:129976..130046 +
Alignment locationCM002463.1:130202..130307 +
Alignment locationCM002463.1:130582..130659 +

Link to JBrowse

Properties
Property NameValue
End range.
End range130659
Protein idEWM26416.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102147g1.1322.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:129743..129752 +
CM002463.1supercontigCM002463.1:129976..130046 +
CM002463.1supercontigCM002463.1:130202..130307 +
CM002463.1supercontigCM002463.1:130582..130659 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
[Close]
BLAST of EWM26416.1 vs. NCBI_GenBank
Match: gi|585108448|gb|EWM26416.1| (hypothetical protein Naga_102147g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 171.4 bits (433), Expect = 4.824e-54
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 
Query:    1 MPNGHYLLGAVGKTLNYLALRYGLAVVVTNGVVLDRSSTPSIPSSSASSAPSPSLWGCRPALGVYWSIYPSLRLMLRLHGGGGGREGG 88
            MPNGHYLLGAVGKTLNYLALRYGLAVVVTNGVVLDRSSTPSIPSSSASSAPSPSLWGCRPALGVYWSIYPSLRLMLRLHGGGGGREGG
Sbjct:    1 MPNGHYLLGAVGKTLNYLALRYGLAVVVTNGVVLDRSSTPSIPSSSASSAPSPSLWGCRPALGVYWSIYPSLRLMLRLHGGGGGREGG 88
The following BLAST results are available for this feature:
BLAST of EWM26416.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108448|gb|EWM26416.1|4.824e-54100.00hypothetical protein Naga_102147g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4267rna4267Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications